Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq486 89.7 6e-13
seq65 86.0 7e-12
seq379 84.2 3e-11
>seq486
Length=217039
Score = 89.7 bits (98), Expect = 6e-13
Identities = 217/326 (67%), Gaps = 2/326 (1%)
Strand=Plus/Plus
Query 109507 GACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGG 109566
|| ||| ||| || ||||| ||||||||| || ||||| | ||| | |||
Sbjct 174897 GATTGACTCTGGTCAATGAAAGCACCACGATCCGCGGCCATTTGGATTGTGGTCTTCACA 174956
Query 109567 CTAATTTCCCAGACAGTCTTGTACAAAT-TCTTGATATCATCGGGAATGTCCACGATGTT 109625
|| ||||| ||||||||||| | || |||| || || | |||||| | ||
Sbjct 174957 GATATCTCCCACACAGTCTTGTAAAGATCTCTT-ATTTCTTTGGGAATACTTTCAATAGA 175015
Query 109626 TTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGAC 109685
||||| || ||| | | ||||||| ||||| || | ||| | | | |
Sbjct 175016 CTGAATGGATCCATTGTTGTGTATAATGAGATTTTTCATATCATCATCCCATAAATCAGC 175075
Query 109686 CTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCG 109745
|| |||||||| || || || | ||||||||| ||||| |||| ||| |
Sbjct 175076 CTCGGTGAGATCGCGAAGCAGGTGATGGTTGACCACCTGGAATTCTCCAGAAAGAACTCT 175135
Query 109746 TCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGC 109805
|| |||| ||||| | ||| | || || || | ||||||||||| || || |||||
Sbjct 175136 TCTTTGGTAAATGTTTGAAGTGAATGGCTCAAATGATTCATTGTTGCCAAGAATCTGTGC 175195
Query 109806 AGTGGAAGCTGTGGGCATGGGAGCCA 109831
|||||| || ||||||||||| ||||
Sbjct 175196 AGTGGAGGCGGTGGGCATGGGGGCCA 175221
>seq65
Length=1244346
Score = 86.0 bits (94), Expect = 7e-12
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 119517 TCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCTTT 119576
||||| | ||||| | ||||| |||||| ||||| |||||||| ||||| || ||
Sbjct 631693 TCATCTCTGGAGATCAATTCATTGCTGAAGGTCAGTCCGGGCATGAGCCCTCTCTTTTTA 631634
Query 119577 AGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCAC 119623
||||| ||||||| ||||| ||||| |||||||||||||| ||
Sbjct 631633 AGCCAGAAGATGGATGCGAAACTGCCAGAGAAGAAGATGCCCTCAAC 631587
>seq379
Length=326478
Score = 84.2 bits (92), Expect = 3e-11
Identities = 72/88 (82%), Gaps = 2/88 (2%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC--CG 136774
||||||||||||||||||||| ||||| ||||||| |||||| ||||||||| ||| |
Sbjct 256820 TAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCGCGGGTTCGATCCCCTCA 256761
Query 136775 TTGGGAACAGCTTTTAGATATATTTTTT 136802
| || ||| ||| | ||||||||||
Sbjct 256760 TGGGCCACAACTTCTTTTTATATTTTTT 256733
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588962792213200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |