Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq486 89.7 6e-13 seq65 86.0 7e-12 seq379 84.2 3e-11 >seq486 Length=217039 Score = 89.7 bits (98), Expect = 6e-13 Identities = 217/326 (67%), Gaps = 2/326 (1%) Strand=Plus/Plus Query 109507 GACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGG 109566 || ||| ||| || ||||| ||||||||| || ||||| | ||| | ||| Sbjct 174897 GATTGACTCTGGTCAATGAAAGCACCACGATCCGCGGCCATTTGGATTGTGGTCTTCACA 174956 Query 109567 CTAATTTCCCAGACAGTCTTGTACAAAT-TCTTGATATCATCGGGAATGTCCACGATGTT 109625 || ||||| ||||||||||| | || |||| || || | |||||| | || Sbjct 174957 GATATCTCCCACACAGTCTTGTAAAGATCTCTT-ATTTCTTTGGGAATACTTTCAATAGA 175015 Query 109626 TTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGAC 109685 ||||| || ||| | | ||||||| ||||| || | ||| | | | | Sbjct 175016 CTGAATGGATCCATTGTTGTGTATAATGAGATTTTTCATATCATCATCCCATAAATCAGC 175075 Query 109686 CTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCG 109745 || |||||||| || || || | ||||||||| ||||| |||| ||| | Sbjct 175076 CTCGGTGAGATCGCGAAGCAGGTGATGGTTGACCACCTGGAATTCTCCAGAAAGAACTCT 175135 Query 109746 TCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGC 109805 || |||| ||||| | ||| | || || || | ||||||||||| || || ||||| Sbjct 175136 TCTTTGGTAAATGTTTGAAGTGAATGGCTCAAATGATTCATTGTTGCCAAGAATCTGTGC 175195 Query 109806 AGTGGAAGCTGTGGGCATGGGAGCCA 109831 |||||| || ||||||||||| |||| Sbjct 175196 AGTGGAGGCGGTGGGCATGGGGGCCA 175221 >seq65 Length=1244346 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 119517 TCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCTTT 119576 ||||| | ||||| | ||||| |||||| ||||| |||||||| ||||| || || Sbjct 631693 TCATCTCTGGAGATCAATTCATTGCTGAAGGTCAGTCCGGGCATGAGCCCTCTCTTTTTA 631634 Query 119577 AGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCAC 119623 ||||| ||||||| ||||| ||||| |||||||||||||| || Sbjct 631633 AGCCAGAAGATGGATGCGAAACTGCCAGAGAAGAAGATGCCCTCAAC 631587 >seq379 Length=326478 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/88 (82%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC--CG 136774 ||||||||||||||||||||| ||||| ||||||| |||||| ||||||||| ||| | Sbjct 256820 TAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCGCGGGTTCGATCCCCTCA 256761 Query 136775 TTGGGAACAGCTTTTAGATATATTTTTT 136802 | || ||| ||| | |||||||||| Sbjct 256760 TGGGCCACAACTTCTTTTTATATTTTTT 256733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588962792213200