Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq486 187 3e-42 >seq486 Length=217039 Score = 187 bits (206), Expect = 3e-42 Identities = 624/959 (65%), Gaps = 13/959 (1%) Strand=Plus/Plus Query 105691 TTGACTCTGGTCAATGAAGCGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTT 105750 |||||||||||||||||| |||||| | || ||||| | || ||||| Sbjct 174899 TTGACTCTGGTCAATGAAAGCACCACGATCCGCGGCCATTTGGATTGTGGTCTTCACAGA 174958 Query 105751 GATTTCCCACACTGTGCGGTAGAGAT-TCTTGATATCATCTGGGATATCTGAGATATTTT 105809 || |||||||| || ||| |||| |||| || || | || ||| | ||| | Sbjct 174959 TATCTCCCACACAGTCTTGTAAAGATCTCTT-ATTTCTTTGGGAATACTTTCAATAGACT 175017 Query 105810 GAATTGAACCCCCCGCCTTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCT 105869 |||| || || | | ||||||| |||||||| | ||| | | || || Sbjct 175018 GAATGGATCCATTGTTGTGTATAATGAGATTTTTCATATCATCATCCCATAAATCAGCCT 175077 Query 105870 TCTTGAGATCATTGACGAGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTC 105929 ||||||| | || || | |||||| | | || ||||| | || ||||| Sbjct 175078 CGGTGAGATCGCGAAGCAGGTGATGGTTGACCACCTGGAATTCTCCAGAAAGAACTCTTC 175137 Query 105930 TCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGG 105989 | | || ||||| | ||| | || ||||| ||||||| || || | || ||||| | Sbjct 175138 TTTGGTAAATGTTTGAAGTGAATGGCTCAAATGATTCATTGTTGCCAAGAATCTGTGCAG 175197 Query 105990 TGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGC 106049 ||||||| || ||||| || |||| ||| ||| ||| || || || | || | ||| Sbjct 175198 TGGAGGCGGTGGGCATGGGGGCCAGCAACAGAGAGTTCCGCAGGCCATGTTTCGCGATCT 175257 Query 106050 GTTCCTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATATCAAA 106107 | ||| ||| || |||||| | | | | | ||| || | ||||||| ||| | Sbjct 175258 TCTGCTTCAGAGCACTCCAGTCCCACAGGTCTG-TGGGTGTCTT-TCCCCACATTTCATA 175315 Query 106108 TTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTC 106167 ||| | | |||| | ||| |||| || | || ||||| || | ||| Sbjct 175316 TTGCAATATTCCTTCACTGGCCGGACAACCAGCATACGTTTCATAAACGCCGAGTTTTTC 175375 Query 106168 AGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATT 106227 |||| ||||||||| || || | | | | ||| ||||||||||| || | ||| Sbjct 175376 GGCCAGTTCACAGCTAGCTTCTAAAGCCCCATAATAGATGGTTTCAAATATTTGTTGATT 175435 Query 106228 CATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCA-CAAAATAAATACATCCGCGA 106286 | || || |||| | || || | | | || ||| ||| | ||| |||| || | Sbjct 175436 GAGCTTCTGGGCTCCTTCACTCTCGTAAG-GAAGGCGCATCAATACAAAAGCATCGGCCA 175494 Query 106287 GACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA- 106345 ||||||| || || | || ||||||| ||| | ||| ||||||||| ||| ||| Sbjct 175495 GACCTTGGACGCCAATGCCGATAGGTCGGTGCCTCATGTTAGACTTTTTCGCT-TCTGGG 175553 Query 106346 ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATT 106405 |||||||| |||| || || | ||| || || | || | || || || | | Sbjct 175554 ACGGGATAGTAATTAACATCGATAATCTTGTTCAGGTTCTCAGTTATGATTTTGGTCACT 175613 Query 106406 TCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCG 106465 | | ||||| ||| ||||| | || | | ||| | ||| || | | || Sbjct 175614 TGTTTTAGTTTCTCAAAATCATATGTTTTATT---TTCGGTTACAAACATGTTGACAGCA 175670 Query 106466 ATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTA 106525 ||||| ||||| ||||||||||| ||||| | ||||||||| | ||| || || Sbjct 175671 ATTGACGCCAAGTTGCAAACAGCTACTTCATCAGCAGATGTGTACTCAACAATCTCCGTG 175730 Query 106526 CACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCA 106585 || | ||| | || || || |||||||||||||| || |||||| ||||||| ||| Sbjct 175731 CATAGATTGCTGCATTTGATGGTTCCCAAATTCTTTTGATTGCTCTTTCTGTTGCATGCA 175790 Query 106586 TCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCA 106644 || ||||| |||||||| || || || ||||| |||| || | ||| |||||||| Sbjct 175791 TCTTTGTAAAGCATGTATGGAGTTCCAGTCTCTACTTGTGCCTCAATAATAGCCTTCCA 175849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589967569680560