Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_015265.1 Length=37236 Score E Sequences producing significant alignments: (Bits) Value seq1001 331 2e-86 >seq1001 Length=29257 Score = 331 bits (366), Expect = 2e-86 Identities = 733/1090 (67%), Gaps = 36/1090 (3%) Strand=Plus/Minus Query 15739 CCAGATAGCGGTCGGTGATGCGCTGGCGGAACGTCAGGTCTTCGAGCGGCGGGGCAGGGC 15798 |||||||| ||||||||||||||||| | ||||||| ||| ||||||||| | ||| Sbjct 7862 CCAGATAGGTATCGGTGATGCGCTGGCGCAGGGTCAGGTTTTCCAGCGGCGGGACGGGGG 7803 Query 15799 AGAAGTCGTAATCGATGAAGCCCTGGCCGGCCTTGAGCGAATCCTTGTCGTTCGCGCCCG 15858 | ||||||||||||| | || ||||| || || | ||| | ||| | ||| Sbjct 7802 TGTAGTCGTAATCGATATACAGCTTCCCGGCTTTCAGGGTTTCCACGGTGTTTGACTCCG 7743 Query 15859 GATCGAACCAGCATTCGCCGTCGATCAGGTAGCCGGCGGTCTTCCACGCGCGGAACTTCG 15918 | ||| |||||||| ||||| | | |||||| | ||| | ||||||| || | Sbjct 7742 GGTCGTACCAGCATGACCCGTCAACGATATAGCCGTTATTTTTCAGCTCGCGGAATTTGG 7683 Query 15919 CATTCACGCCATCGACGATGTCGCGCATCAGCGT-GCGGCTCATCGGCTGGTCGACGGCC 15977 |||| | || |||| |||||||| || ||||| |||| | |||| ||| | ||| Sbjct 7682 CATTGATACCGGCGACAATGTCGCGGATAAGCGTTGCGGAA-ACGGGCTTGTCCATCGCC 7624 Query 15978 CACATGTGCGCCTCGGCCATCGTGTCGGCGATCACCTGCGCACTGCGCACATAGTTCTCG 16037 ||| ||||||||| |||||||||||||| | ||||||||| |||| ||||| || Sbjct 7623 CACGCGTGCGCCTCCGCCATCGTGTCGGCCAGCACCTGCGCCGTGCGGGTGTAGTTTTCA 7564 Query 16038 AACGCCCACAGCTTGTCCTCGGAACAGGTGCGCGATCCCCATAGACGGTAA-CCGTCCGC 16096 ||| | | | || || || ||||| || ||||| | || || ||||| Sbjct 7563 AACACGAATAAAGGATCGTCCGAGCAGGTACGGTTGCCCCAGA-ACTTAAAGCCGTCGTT 7505 Query 16097 GTTCACCAGCGTGGTCACTTCGTGGCTG-TTCAGGTAGCCCGCGTCGGTGTTCGGGTCCT 16155 | | ||||| ||||| || | ||| ||||| | |||||||| | | |||| Sbjct 7504 GCGGATTAGCGTTGTCACCCCG-GCCTGATTCAGCAGGTTGGCGTCGGTAGCCTGCTCCT 7446 Query 16156 GCAGGTCCCAGAACACGTCGCGGCTGATGCCCGTGACGCCGTTGACCACGACGTTCGAGA 16215 ||| ||||| | || | ||||| ||| |||||||| || || | ||||| || | Sbjct 7445 GCAAATCCCATGAGACCGAGGCGCTGACGCCGGTGACGCCATTCACGCCAACGTTAGACA 7386 Query 16216 TCGTCTTGTGCCAGCCGATCTCTTCGTCGATCTTCGCGCGCATGCCGAGCGCGCGCGCCG 16275 ||| |||||||| ||| |||| | |||||| || ||||||| |||||||||||| || | Sbjct 7385 GCGTTTTGTGCCATCCGGTCTCCTGGTCGATTTTGGCGCGCAGGCCGAGCGCGCGGGCGG 7326 Query 16276 TTGCCCACGTGATGTCCTCGGCGTTGGTCGTGGTGTTCCAGTTCACGAAATCCGGCCAGA 16335 | ||||| | || || |||| | |||||||| ||| || || || || | Sbjct 7325 TCGCCCATGCAATATCGGTTTCGTTCGCCGTGGTGTCCCATGCCAGAAAGTCAGGGTGAA 7266 Query 16336 TCGTCATCAGCTCACGCTGGCCGAAGTTCGCGCGGTAGGTGGTCGCTTCCTCCTTCGTCT 16395 | ||||||||| ||||||| ||| ||| | ||||| || | || || | |||| Sbjct 7265 TGACCATCAGCTCGCGCTGGCTGAAATTCTCACGGTATTTGATGGCGTCGGAAATGGTCT 7206 Query 16396 GTGC-GCCGAACGCGCTGATGTAGCCGAAGCCGCGCAGCTTCTGCGCGATCGTCGCAAGC 16454 ||| ||| ||||||| | ||||||||| ||||||| |||| | | | ||||||| Sbjct 7205 -TGCAGCCCCACGCGCTTACGTAGCCGAACGCGCGCAGGCTCTGGCAGGTTGACGCAAGC 7147 Query 16455 TCGGACGCGACGGGCAGGGTGTCGAGGCCTGGACAACCGAGCACGCGCGGCTTCACGCCG 16514 ||| ||| || | | || || || || || ||||| | ||||||||| |||||| Sbjct 7146 GCGGTCGCCACTTCCTGCGTATCCAGCCCCGGCACGCCGAGAATGCGCGGCTTAACGCCG 7087 Query 16515 AGGCGGCTCTTCGCGGCGAGCAGCGCCTTCATACCGGTGTACTGACCGTCCGCGGTGGTC 16574 | | | ||||| | | |||||| |||| |||||||| | |||| || |||| Sbjct 7086 GTGACGGTTTTCGCCGTTAACAGCGCTTTCAGCCCGGTGTATTTGCCGTTTTCGTCGGTC 7027 Query 16575 GTGCCGATCACGTTG---CTGGT---------CGTGGTATCCGGATCCTTGCC-GGTC-- 16619 |||||||| | |||| |||| || | ||||| || |||| |||| Sbjct 7026 GTGCCGATGATGTTGGAAATGGTTTCTTTCTGCGCCGCTTCCGGGTC--TGCCGGGTCGT 6969 Query 16620 -----------GGCACACGCACCGCGACGATCAGCGGGGACGTCTGCGCGGCGATCGCAT 16668 || || |||||| | || || | ||| ||| ||||||| || | Sbjct 6968 CGACACCTTCTGGAACGCGCACCACCACAATGACCGGTTTGCACTGGTCGGCGATGGCCT 6909 Query 16669 CGAGCGAACGCGCGAGCGTGCCCTTCGTGCCTGCCTTGCCGATCGCTGCCTGCACGTCGG 16728 || || || |||||||| || | || || || ||||| || | |||||| | Sbjct 6908 GCAGGGATTTTGCCAGCGTGCCTTTTTTACCGGCTTTACCGATAGCCGTTTGCACGCTGT 6849 Query 16729 TGATGAGAACGGGACGGTTTTCGGGGAAGGTGGCCGCATCGGCGTCGTCGGCCGTGCTGA 16788 | || || || || |||| |||||| || || || || ||| |||||||| || Sbjct 6848 TAATCAGTACCGGCTCGTTTAAGGGGAATGTCTTTGCGTCAGCATCGCTGGCCGTGCAGA 6789 Query 16789 CCAGGCCGAT 16798 ||| |||||| Sbjct 6788 CCATGCCGAT 6779 Score = 123 bits (136), Expect = 6e-24 Identities = 128/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 21808 GTACGCGCCTTCCTGCAGCAGCTTCACCATCGGCTCGGATTCGAGCTCGAGCGCGGCAGC 21867 ||| ||| |||||||||||||||||||| ||||||||| || ||| |||| | || Sbjct 2903 GTAGGCGTTTTCCTGCAGCAGCTTCACCAGCGGCTCGGACTCAAGCGACAGCGTGCGCGC 2844 Query 21868 GATTTCGTCCTGCTGTTCTTTCGGGTACAGGGAAACGAGCCGGGCCTTCTTCTCGGCGAG 21927 |||| |||||||||| |||| |||||| || || ||||| ||||| ||| || Sbjct 2843 GATTGCGTCCTGCTGGTCTTCCGGGTATAGCGAGACGAGTGTCGCCTTTCGTTCGCTCAG 2784 Query 21928 GATGGTTTCGTAGTCGAGCTCCTCGACGATGTCCGGCGCTGGCAGCTG 21975 ||||||||| ||||| || || || |||| ||| ||||| | ||||| Sbjct 2783 GATGGTTTCATAGTCCAGTTCTTCCACGACGTCAGGCGCGGCGAGCTG 2736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119031064137944