Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_015266.1 Length=40555 Score E Sequences producing significant alignments: (Bits) Value seq1001 230 6e-56 >seq1001 Length=29257 Score = 230 bits (254), Expect = 6e-56 Identities = 1136/1770 (64%), Gaps = 130/1770 (7%) Strand=Plus/Minus Query 13577 GTTACAGGCCGATCGCCTGGCGCAGACCGGCGAGCAGGTCGTTACCGTTGATCTTCTCGA 13636 |||||||||| |||||| |||| | | ||||| ||||| |||| || ||| | Sbjct 8423 GTTACAGGCCAATCGCCCGGCGGTGCTCAGCGAGACGGTCGACGCCGTCGACTTTCATCA 8364 Query 13637 TCATGTTGATGAAATCCATCTCGATCAGCTCCTGACCGTTGATGGACAGCTTGTAGTAGC 13696 |||||||| || || |||||||| | ||||| |||| || | |||| ||||| Sbjct 8363 CCATGTTGACGACGTCAATCTCGATGACCTCCTTGCCGTCAATCGTGAGCTGATAGTAAG 8304 Query 13697 TGGCCGCCGTCGTGACCTTGAAATCGGTGTC---TTCCTTCGGCTTGCCTGAACCCATGT 13753 | | | |||| || ||| ||| || | ||| | | ||| | || || Sbjct 8303 AGCACTCGGTCGAGATTTTGG--TCG-TGCCGCTTTCGCCCTGTTTGTTTTCGCCGCCGT 8247 Query 13754 CGATTTCCTTGTGGCGGCCGCGCACGACGATTTCGACCG----AAT--CGTAGGTCTTCG 13807 || |||||||| ||||| |||| ||| | || || | ||| || ||| | Sbjct 8246 CGTACTCCTTGTGACGGCCACGCATGACCACCTCAACGGCGGAAATAGCGCCGGTGT--- 8190 Query 13808 AATCCTCGCGCTGGTAGCCGCCCGAGAAACGAAGTTGCACGCCGTCGTG-CGTGGTGATG 13866 | ||||||||| | ||| | ||| || || |||||| |||| | ||||| | Sbjct 8189 ---CGTCGCGCTGGAAAGAGCCGGTGAAGCGCAGCGGCACGCTGTCGGCACCCGGTGACG 8133 Query 13867 CCGTACATGCGAACGACATC----CTCCATGAAG-CCGCCGCACGTCCATTCGAGCTGGA 13921 | |||| |||| | ||| | | || | || ||||| |||||| || ||| | Sbjct 8132 C-GTAC-TGCGCCC-ACAGCTCGACGTCAGGCAGGCCGCCCAGCGTCCACTCAAGCGACA 8076 Query 13922 TCGCTTCCTGG------CCGAAGTCGATCGGGATCGGGCCGCTCATGCCGCCGCCCTGGT 13975 ||| || | | |||| ||| |||| | || ||| ||| |||||||| ||| Sbjct 8075 GCGCGTCGTCGTCGAGACCGAGGTCAATCGACACCGAGCCCGGCATCCCGCCGCCGCGGT 8016 Query 13976 AGTCCTCCATCTTTCGCGACAGCTTCGGGAGCT----GGATTTCCTTCGTCTCGCCGACA 14031 | | ||| | ||| || | |||||| || || ||||| | || | ||| | Sbjct 8015 ATTTCTCAAGCTTGCGGGTCAGCTTTGGCAGGGTGACGGATT--CAACGAC--GCCCATG 7960 Query 14032 AAGTTGGTGCCGTTGTGAAACAGGTTGAAGCCTTTCAGCTTGCGGGGCATACCCATGTGT 14091 || || ||||| || ||||| || | | |||||| ||||| || | |||||| | Sbjct 7959 TAGCTGAGGCCGTCGTTAAACATATTCAGGTATTTCAGTTTGCGTGGTAACGCCATGT-T 7901 Query 14092 GTGA-CTCCT--GGT-TAGGCCGACACGCGCGAGGCGAAATCGGCGAGATAGCGATCGGT 14147 ||| ||||| | | | | ||||| | | ||| || || |||||| |||||| Sbjct 7900 CTGAGCTCCTTAGCTGTTGACCGACTCTGAC-AGG-----TCAGCCAGATAGGTATCGGT 7847 Query 14148 GATGCGCTGGCGCAGCTTCAGGTTTTCGAGCGGCGGGACCGGCGTGTAGTCGTAGTCGAT 14207 ||||||||||||||| |||||||||| ||||||||||| || ||||||||||| ||||| Sbjct 7846 GATGCGCTGGCGCAGGGTCAGGTTTTCCAGCGGCGGGACGGGGGTGTAGTCGTAATCGAT 7787 Query 14208 CCATGTACCG-CCCGACGT-CAGCTCGTCGGTCGTGTTCGGCTCCGGGTCGTACCAG--- 14262 || | | |||| | | ||| || ||||| | |||||||||||||||| Sbjct 7786 --ATACAGCTTCCCGGCTTTCAGGGTTTCCACGGTGTTTGACTCCGGGTCGTACCAGCAT 7729 Query 14263 GCGCCGCCACCGATCAGCTCGCCGACCGAGACTTC-GCG-GCGGAACCACGCGTTGATGT 14320 | ||| || |||| | |||| | ||| || |||||| || ||||| Sbjct 7728 GACCCGTCAACGATA---TAGCCGTT--ATTTTTCAGCTCGCGGAATTTGGCATTGATAC 7674 Query 14321 TCTCGATGATGTcgcgcgcgcgcgACGGGTTGAG----CGGGCC-GTCGACGACGCCCAT 14375 ||| |||||||| | | | |||| | ||||| ||| | |||||| Sbjct 7673 CGGCGACAATGTCGCG-----GATAAGCGTTGCGGAAACGGGCTTGTCCAT--CGCCCAC 7621 Query 14376 CTGTTC--CTCGGCGATCGTGTCAGCGATCACCTGTGCCGAACGCGTGTAGTTCTCGAA- 14432 || | ||| || |||||||| || | |||||| |||| || |||||||| || || Sbjct 7620 GCGTGCGCCTCCGCCATCGTGTCGGCCAGCACCTGCGCCGTGCGGGTGTAGTTTTCAAAC 7561 Query 14433 --GAAGAACTTGCCGTCCGCGTCGCACGTGCGCGAGCCCCAGAAACGGAAGCCGTTTCGG 14490 ||| || |||||| | || || || ||||||||| ||||||| | Sbjct 7560 ACGAATAAAGGATCGTCCGAG---CAGGTACGGTTGCCCCAGAACTTAAAGCCGTCGTTG 7504 Query 14491 TTGACGAGCGTGGTGACCTGGTTCTCGTTCAGATAGCCGGCGTCCGTTGCCGGGTCTTGC 14550 || ||||| || ||| | || ||||| | |||||| || ||| | || ||| Sbjct 7503 CGGATTAGCGTTGTCACCCCGGCCTGATTCAGCAGGTTGGCGTCGGTAGCCTGCTCCTGC 7444 Query 14551 AAATCCCACGACACGTCCGCGCTGATGCCGGTCACGCCGTTGACGACGACGTTCGACAGC 14610 |||||||| || || ||||||| |||||| ||||| || ||| | ||||| |||||| Sbjct 7443 AAATCCCATGAGACCGAGGCGCTGACGCCGGTGACGCCATTCACGCCAACGTTAGACAGC 7384 Query 14611 GTCTTGTGCCAGCCGATGTCGTTGTCGATCTTCGCGCGCAGGCCCGCCGCGATCGCCGGC 14670 || |||||||| ||| | || | |||||| || ||||||||||| |||| || | | Sbjct 7383 GTTTTGTGCCATCCGGTCTCCTGGTCGATTTTGGCGCGCAGGCCGAGCGCGCGGGCGGTC 7324 Query 14671 GCCGGGATGGCGA---CGGTCGAGTTCGTTATGTCGTCCCAGCCGAGCCAATCCGGCCAG 14727 ||| || || | |||| ||||| || |||||| | || | || || Sbjct 7323 GCC--CAT-GCAATATCGGTTTCGTTCGCCGTGGTGTCCCATGCCAGAAAGTCAGGGTGA 7267 Query 14728 ATCACCATGATTTCGCGCTGGCCGAACTGCTTGCGGTACGCGACCGCCTCTTCCTTCGTC 14787 || ||||| | |||||||||| ||| | || ||||| || || || | ||| Sbjct 7266 ATGACCATCAGCTCGCGCTGGCTGAAATTCTCACGGTATTTGATGGCGTCGGAAATGGTC 7207 Query 14788 TTGCAGCCGTGCGCGGCGACGTACACCATCGCGCGCAGCGATTGCGCGATCGTCGCGAAT 14847 |||||||| |||| ||||| | | ||||||||| || | | | ||| | Sbjct 7206 TTGCAGCCCCACGCGCTTACGTAGCCGAACGCGCGCAGGCTCTGGCAGGTTGACGCAAGC 7147 Query 14848 GCTGCGGCGACGGGCTGCGTGTCGAGGCCGGGCGCGACCAGGATGCGCGGCTTCACGGCG 14907 || | || || |||||| || || || ||| || | || ||||||||||| ||| || Sbjct 7146 GCGGTCGCCACTTCCTGCGTATCCAGCCCCGGCACGCCGAGAATGCGCGGCTTAACGCCG 7087 Query 14908 ----AGCTTCCCCTGCGCGGCCAGCAACGCCTTCATGCCGGTGTATTTGCCG--TCCGGC 14961 | || | ||| | | || ||| |||| ||||||||||||||| | || | Sbjct 7086 GTGACGGTT----TTCGCCGTTAACAGCGCTTTCAGCCCGGTGTATTTGCCGTTTTCGTC 7031 Query 14962 GTGACGGTGCCGATGACGTT------------------CGCGG--TC---GTCT-CGGCT 14997 | | | |||||||||| ||| ||| | || |||| | | Sbjct 7030 G-GTC-GTGCCGATGATGTTGGAAATGGTTTCTTTCTGCGCCGCTTCCGGGTCTGCCGGG 6973 Query 14998 TCGTCCTTTCCTTCCGCGACGCGCACGACGACGGTGACGGGCTTCGTCTGCTTGCCGATC 15057 ||||| ||||| | |||||||| || || |||| || || ||| | | |||| Sbjct 6972 TCGTCGACACCTTCTGGAACGCGCACCACCACAATGACCGGTTTGCACTGGTCGGCGATG 6913 Query 15058 GCGTCGAGCG-TGCGGCGCAGCGTGCCCTTCGTGCCGGCCTTGCCAAGCGCCGCGATGAC 15116 || | || | | || ||||||||| || | ||||| || || | |||| || Sbjct 6912 GCCTGCAGGGATTTTGC-CAGCGTGCCTTTTTTACCGGCTTTACCGATAGCCGTTTGCAC 6854 Query 15117 GTTCGTCAGCAGCACCGGCGTGTCGAGCGGGAACGTCGCCGGGTCGGCGNNNNNNNNNNT 15176 | | | | ||| |||||| || | ||||| ||| | ||| || | Sbjct 6853 GCTGTTAATCAGTACCGGCTCGTTTAAGGGGAATGTCTTTGCGTCAGCATCGCTGGCCGT 6794 Query 15177 GCAGACGATGCCGAGCACGGCCGTGGAGACCGTGCGAATCGGCCGGCCGCCTTCGTTGAT 15236 |||||| ||||||| | |||||| || || ||| ||| | || ||| ||||| || Sbjct 6793 GCAGACCATGCCGATGATGGCCGTCGAAACGGTGGAAATGGTGCGCGTGCCATCGTTAAT 6734 Query 15237 TTCGATGACGCGTACGCCGTGGTGGTAATC 15266 |||||||| |||||||| || || || Sbjct 6733 CTCGATGACCTCGACGCCGTGATGATAGTC 6704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129651637875076