Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_015266.1
Length=40555
Score E
Sequences producing significant alignments: (Bits) Value
seq1001 230 6e-56
>seq1001
Length=29257
Score = 230 bits (254), Expect = 6e-56
Identities = 1136/1770 (64%), Gaps = 130/1770 (7%)
Strand=Plus/Minus
Query 13577 GTTACAGGCCGATCGCCTGGCGCAGACCGGCGAGCAGGTCGTTACCGTTGATCTTCTCGA 13636
|||||||||| |||||| |||| | | ||||| ||||| |||| || ||| |
Sbjct 8423 GTTACAGGCCAATCGCCCGGCGGTGCTCAGCGAGACGGTCGACGCCGTCGACTTTCATCA 8364
Query 13637 TCATGTTGATGAAATCCATCTCGATCAGCTCCTGACCGTTGATGGACAGCTTGTAGTAGC 13696
|||||||| || || |||||||| | ||||| |||| || | |||| |||||
Sbjct 8363 CCATGTTGACGACGTCAATCTCGATGACCTCCTTGCCGTCAATCGTGAGCTGATAGTAAG 8304
Query 13697 TGGCCGCCGTCGTGACCTTGAAATCGGTGTC---TTCCTTCGGCTTGCCTGAACCCATGT 13753
| | | |||| || ||| ||| || | ||| | | ||| | || ||
Sbjct 8303 AGCACTCGGTCGAGATTTTGG--TCG-TGCCGCTTTCGCCCTGTTTGTTTTCGCCGCCGT 8247
Query 13754 CGATTTCCTTGTGGCGGCCGCGCACGACGATTTCGACCG----AAT--CGTAGGTCTTCG 13807
|| |||||||| ||||| |||| ||| | || || | ||| || ||| |
Sbjct 8246 CGTACTCCTTGTGACGGCCACGCATGACCACCTCAACGGCGGAAATAGCGCCGGTGT--- 8190
Query 13808 AATCCTCGCGCTGGTAGCCGCCCGAGAAACGAAGTTGCACGCCGTCGTG-CGTGGTGATG 13866
| ||||||||| | ||| | ||| || || |||||| |||| | ||||| |
Sbjct 8189 ---CGTCGCGCTGGAAAGAGCCGGTGAAGCGCAGCGGCACGCTGTCGGCACCCGGTGACG 8133
Query 13867 CCGTACATGCGAACGACATC----CTCCATGAAG-CCGCCGCACGTCCATTCGAGCTGGA 13921
| |||| |||| | ||| | | || | || ||||| |||||| || ||| |
Sbjct 8132 C-GTAC-TGCGCCC-ACAGCTCGACGTCAGGCAGGCCGCCCAGCGTCCACTCAAGCGACA 8076
Query 13922 TCGCTTCCTGG------CCGAAGTCGATCGGGATCGGGCCGCTCATGCCGCCGCCCTGGT 13975
||| || | | |||| ||| |||| | || ||| ||| |||||||| |||
Sbjct 8075 GCGCGTCGTCGTCGAGACCGAGGTCAATCGACACCGAGCCCGGCATCCCGCCGCCGCGGT 8016
Query 13976 AGTCCTCCATCTTTCGCGACAGCTTCGGGAGCT----GGATTTCCTTCGTCTCGCCGACA 14031
| | ||| | ||| || | |||||| || || ||||| | || | ||| |
Sbjct 8015 ATTTCTCAAGCTTGCGGGTCAGCTTTGGCAGGGTGACGGATT--CAACGAC--GCCCATG 7960
Query 14032 AAGTTGGTGCCGTTGTGAAACAGGTTGAAGCCTTTCAGCTTGCGGGGCATACCCATGTGT 14091
|| || ||||| || ||||| || | | |||||| ||||| || | |||||| |
Sbjct 7959 TAGCTGAGGCCGTCGTTAAACATATTCAGGTATTTCAGTTTGCGTGGTAACGCCATGT-T 7901
Query 14092 GTGA-CTCCT--GGT-TAGGCCGACACGCGCGAGGCGAAATCGGCGAGATAGCGATCGGT 14147
||| ||||| | | | | ||||| | | ||| || || |||||| ||||||
Sbjct 7900 CTGAGCTCCTTAGCTGTTGACCGACTCTGAC-AGG-----TCAGCCAGATAGGTATCGGT 7847
Query 14148 GATGCGCTGGCGCAGCTTCAGGTTTTCGAGCGGCGGGACCGGCGTGTAGTCGTAGTCGAT 14207
||||||||||||||| |||||||||| ||||||||||| || ||||||||||| |||||
Sbjct 7846 GATGCGCTGGCGCAGGGTCAGGTTTTCCAGCGGCGGGACGGGGGTGTAGTCGTAATCGAT 7787
Query 14208 CCATGTACCG-CCCGACGT-CAGCTCGTCGGTCGTGTTCGGCTCCGGGTCGTACCAG--- 14262
|| | | |||| | | ||| || ||||| | ||||||||||||||||
Sbjct 7786 --ATACAGCTTCCCGGCTTTCAGGGTTTCCACGGTGTTTGACTCCGGGTCGTACCAGCAT 7729
Query 14263 GCGCCGCCACCGATCAGCTCGCCGACCGAGACTTC-GCG-GCGGAACCACGCGTTGATGT 14320
| ||| || |||| | |||| | ||| || |||||| || |||||
Sbjct 7728 GACCCGTCAACGATA---TAGCCGTT--ATTTTTCAGCTCGCGGAATTTGGCATTGATAC 7674
Query 14321 TCTCGATGATGTcgcgcgcgcgcgACGGGTTGAG----CGGGCC-GTCGACGACGCCCAT 14375
||| |||||||| | | | |||| | ||||| ||| | ||||||
Sbjct 7673 CGGCGACAATGTCGCG-----GATAAGCGTTGCGGAAACGGGCTTGTCCAT--CGCCCAC 7621
Query 14376 CTGTTC--CTCGGCGATCGTGTCAGCGATCACCTGTGCCGAACGCGTGTAGTTCTCGAA- 14432
|| | ||| || |||||||| || | |||||| |||| || |||||||| || ||
Sbjct 7620 GCGTGCGCCTCCGCCATCGTGTCGGCCAGCACCTGCGCCGTGCGGGTGTAGTTTTCAAAC 7561
Query 14433 --GAAGAACTTGCCGTCCGCGTCGCACGTGCGCGAGCCCCAGAAACGGAAGCCGTTTCGG 14490
||| || |||||| | || || || ||||||||| ||||||| |
Sbjct 7560 ACGAATAAAGGATCGTCCGAG---CAGGTACGGTTGCCCCAGAACTTAAAGCCGTCGTTG 7504
Query 14491 TTGACGAGCGTGGTGACCTGGTTCTCGTTCAGATAGCCGGCGTCCGTTGCCGGGTCTTGC 14550
|| ||||| || ||| | || ||||| | |||||| || ||| | || |||
Sbjct 7503 CGGATTAGCGTTGTCACCCCGGCCTGATTCAGCAGGTTGGCGTCGGTAGCCTGCTCCTGC 7444
Query 14551 AAATCCCACGACACGTCCGCGCTGATGCCGGTCACGCCGTTGACGACGACGTTCGACAGC 14610
|||||||| || || ||||||| |||||| ||||| || ||| | ||||| ||||||
Sbjct 7443 AAATCCCATGAGACCGAGGCGCTGACGCCGGTGACGCCATTCACGCCAACGTTAGACAGC 7384
Query 14611 GTCTTGTGCCAGCCGATGTCGTTGTCGATCTTCGCGCGCAGGCCCGCCGCGATCGCCGGC 14670
|| |||||||| ||| | || | |||||| || ||||||||||| |||| || | |
Sbjct 7383 GTTTTGTGCCATCCGGTCTCCTGGTCGATTTTGGCGCGCAGGCCGAGCGCGCGGGCGGTC 7324
Query 14671 GCCGGGATGGCGA---CGGTCGAGTTCGTTATGTCGTCCCAGCCGAGCCAATCCGGCCAG 14727
||| || || | |||| ||||| || |||||| | || | || ||
Sbjct 7323 GCC--CAT-GCAATATCGGTTTCGTTCGCCGTGGTGTCCCATGCCAGAAAGTCAGGGTGA 7267
Query 14728 ATCACCATGATTTCGCGCTGGCCGAACTGCTTGCGGTACGCGACCGCCTCTTCCTTCGTC 14787
|| ||||| | |||||||||| ||| | || ||||| || || || | |||
Sbjct 7266 ATGACCATCAGCTCGCGCTGGCTGAAATTCTCACGGTATTTGATGGCGTCGGAAATGGTC 7207
Query 14788 TTGCAGCCGTGCGCGGCGACGTACACCATCGCGCGCAGCGATTGCGCGATCGTCGCGAAT 14847
|||||||| |||| ||||| | | ||||||||| || | | | ||| |
Sbjct 7206 TTGCAGCCCCACGCGCTTACGTAGCCGAACGCGCGCAGGCTCTGGCAGGTTGACGCAAGC 7147
Query 14848 GCTGCGGCGACGGGCTGCGTGTCGAGGCCGGGCGCGACCAGGATGCGCGGCTTCACGGCG 14907
|| | || || |||||| || || || ||| || | || ||||||||||| ||| ||
Sbjct 7146 GCGGTCGCCACTTCCTGCGTATCCAGCCCCGGCACGCCGAGAATGCGCGGCTTAACGCCG 7087
Query 14908 ----AGCTTCCCCTGCGCGGCCAGCAACGCCTTCATGCCGGTGTATTTGCCG--TCCGGC 14961
| || | ||| | | || ||| |||| ||||||||||||||| | || |
Sbjct 7086 GTGACGGTT----TTCGCCGTTAACAGCGCTTTCAGCCCGGTGTATTTGCCGTTTTCGTC 7031
Query 14962 GTGACGGTGCCGATGACGTT------------------CGCGG--TC---GTCT-CGGCT 14997
| | | |||||||||| ||| ||| | || |||| | |
Sbjct 7030 G-GTC-GTGCCGATGATGTTGGAAATGGTTTCTTTCTGCGCCGCTTCCGGGTCTGCCGGG 6973
Query 14998 TCGTCCTTTCCTTCCGCGACGCGCACGACGACGGTGACGGGCTTCGTCTGCTTGCCGATC 15057
||||| ||||| | |||||||| || || |||| || || ||| | | ||||
Sbjct 6972 TCGTCGACACCTTCTGGAACGCGCACCACCACAATGACCGGTTTGCACTGGTCGGCGATG 6913
Query 15058 GCGTCGAGCG-TGCGGCGCAGCGTGCCCTTCGTGCCGGCCTTGCCAAGCGCCGCGATGAC 15116
|| | || | | || ||||||||| || | ||||| || || | |||| ||
Sbjct 6912 GCCTGCAGGGATTTTGC-CAGCGTGCCTTTTTTACCGGCTTTACCGATAGCCGTTTGCAC 6854
Query 15117 GTTCGTCAGCAGCACCGGCGTGTCGAGCGGGAACGTCGCCGGGTCGGCGNNNNNNNNNNT 15176
| | | | ||| |||||| || | ||||| ||| | ||| || |
Sbjct 6853 GCTGTTAATCAGTACCGGCTCGTTTAAGGGGAATGTCTTTGCGTCAGCATCGCTGGCCGT 6794
Query 15177 GCAGACGATGCCGAGCACGGCCGTGGAGACCGTGCGAATCGGCCGGCCGCCTTCGTTGAT 15236
|||||| ||||||| | |||||| || || ||| ||| | || ||| ||||| ||
Sbjct 6793 GCAGACCATGCCGATGATGGCCGTCGAAACGGTGGAAATGGTGCGCGTGCCATCGTTAAT 6734
Query 15237 TTCGATGACGCGTACGCCGTGGTGGTAATC 15266
|||||||| |||||||| || || ||
Sbjct 6733 CTCGATGACCTCGACGCCGTGATGATAGTC 6704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 129651637875076
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |