Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_015269.1 Length=118351 Score E Sequences producing significant alignments: (Bits) Value seq637 147 2e-30 seq236 87.8 1e-12 >seq637 Length=122170 Score = 147 bits (162), Expect = 2e-30 Identities = 144/186 (77%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 27376 TTACATCGCCTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGC 27435 |||||| | |||||| || ||||| | |||||||| | ||| ||||| |||||| | Sbjct 107106 TTACATGGACTGAGTGAAAGTACGGGTGATAACGTCCTGCTGCTGTTCTTTAGTCAGGGA 107165 Query 27436 GTTAAATCGAACAGCATAGCCAGAGACACGGATAGTCAATTGAGGATATTTTTCAGGATG 27495 |||||| || || || |||||||| |||||||| |||| ||||||||||| |||||||| Sbjct 107166 GTTAAAACGTACTGCGTAGCCAGATACACGGATGGTCAGCTGAGGATATTTCTCAGGATG 107225 Query 27496 TTTCTGTGCATCCAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCACC 27555 || | ||||| | ||| |||||| | | || || || || |||||||||||||| Sbjct 107226 TTCCATCGCATCGAGCAGCATTTCACGGTTCATTACGTTCACGTTCAGGTGCTGACCACC 107285 Query 27556 TTCGAT 27561 |||||| Sbjct 107286 TTCGAT 107291 >seq236 Length=545527 Score = 87.8 bits (96), Expect = 1e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 27388 AGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGCGTTAAATCGAAC 27447 |||||| ||||| ||||||||| ||| ||||| | ||||| | ||| || || || Sbjct 30883 AGTAAAGGTACGCGCGATAACGTCGCGCTGCTGTTCTGGGGTCAGAGAGTTGAAGCGTAC 30824 Query 27448 AGCATAGCCAGAGACACGGATAGTCAATTGAGGATATTTTTCAGGATGTTTCTGTGCATC 27507 ||||| ||||| || || || |||| || || |||||||| || || | || || Sbjct 30823 CGCATAACCAGACACGCGAATGGTCAGCTGCGGGTATTTTTCTGGGTGCTCAACCGCGTC 30764 Query 27508 CAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCACCTTC 27558 || ||| || |||| | || || || || ||||||||||||||||| Sbjct 30763 CATCAGCGTTTCGCGGCGCAGTACGTTTACGTTAAGGTGCTGACCACCTTC 30713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378590122182608