Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_015273.1
Length=32317
Score E
Sequences producing significant alignments: (Bits) Value
seq1001 316 4e-82
>seq1001
Length=29257
Score = 316 bits (350), Expect = 4e-82
Identities = 765/1160 (66%), Gaps = 45/1160 (4%)
Strand=Plus/Minus
Query 12190 TCGGTGATGCGTTGGCGCAGCATCAGGTTTTCGATCGGCGGAACGGGCGTGTAGTCGTAA 12249
||||||||||| |||||||| |||||||||| | |||||| ||||| ||||||||||||
Sbjct 7851 TCGGTGATGCGCTGGCGCAGGGTCAGGTTTTCCAGCGGCGGGACGGGGGTGTAGTCGTAA 7792
Query 12250 TCGATCGCCAGCTTGCCGGCCTTGAGCGATTCGACGGGGTTCG-CGCTGTCGTCGTACCA 12308
||||| |||||| ||||| || || | ||| |||| ||| | | | | |||||||||
Sbjct 7791 TCGATATACAGCTTCCCGGCTTTCAGGGTTTCCACGGTGTTTGACTCCGG-GTCGTACCA 7733
Query 12309 AGCCGAGCCGCCGAGCAGATAGCCGTTTGCGATCAGCTCGCGGAATTTCGCGTTGATGCT 12368
|| ||| | | | ||||||||| |||||||||||||||| || ||||| |
Sbjct 7732 GCATGACCCGTCAACGATATAGCCGTTATTTTTCAGCTCGCGGAATTTGGCATTGATACC 7673
Query 12369 TTCGATCATGTCTTTCACGATCGACGGGTGCATCGGCTTGTCGACATAAACCA--TGTGT 12426
||| ||||| | | || | | | |||||||| ||| ||| |||
Sbjct 7672 GGCGACAATGTCGCGGATAAGCGTTGCGGAAACGGGCTTGTC--CATCGCCCACGCGTGC 7615
Query 12427 GCTTCCGCCATCGTGTCGGCGAGCACTTGCGCGGTGCGCGTGTAGTTCTCGAATGCGAAC 12486
|| ||||||||||||||||| ||||| ||||| ||||| |||||||| || || ||||
Sbjct 7614 GCCTCCGCCATCGTGTCGGCCAGCACCTGCGCCGTGCGGGTGTAGTTTTCAAACACGAAT 7555
Query 12487 AGCGGATCATCCGAGCAGGTGCGCGAACCCCAGAAGCGATAGCCCGTCG-AGTTGATGAG 12545
| ||||| ||||||||||| || |||||||| | || |||||| | ||| ||
Sbjct 7554 AAAGGATCGTCCGAGCAGGTACGGTTGCCCCAGAACTTAAAG-CCGTCGTTGCGGATTAG 7496
Query 12546 CGTCGTCACATCGTTCTCGTTGAGGTAGCCGGCATCGGTCGCGGGGTCTTGCAAGTCCCA 12605
||| ||||| || || || || | ||| ||||| || | || ||||| |||||
Sbjct 7495 CGTTGTCACCCCGGCCTGATTCAGCAGGTTGGCGTCGGTAGCCTGCTCCTGCAAATCCCA 7436
Query 12606 GAAAACATCCTTGCTGATACCCGTAACGCCATTGATGCCGACATTCGAAATCGTCTTGTG 12665
| || ||||| || || |||||||| | ||| || || || | ||| |||||
Sbjct 7435 TGAGACCGAGGCGCTGACGCCGGTGACGCCATTCACGCCAACGTTAGACAGCGTTTTGTG 7376
Query 12666 CCAGCCCGTTTCCTCGTCGATCTTGGCGCGCAAGCCGAGCGCGATCGCGGTCGCGTCNNN 12725
||| || || |||| |||||| |||||||||| |||||||||| ||||||||
Sbjct 7375 CCATCCGGTCTCCTGGTCGATTTTGGCGCGCAGGCCGAGCGCGCGGGCGGTCGCCCATGC 7316
Query 12726 NNNNNNNNNNNNNNNNNNNNNNNTGTCCCATCCGAGGAAATCCGGCCACATCACCATCAG 12785
|||||||| | || || || || || ||||||||
Sbjct 7315 AATATCGGTTTCGTTCGCCGTGGTGTCCCATGCCAGAAAGTCAGGGTGAATGACCATCAG 7256
Query 12786 CTCGCGTTGGCTGAATTGCTGGCGATAGGCCATCGCCGCTTCCTTGTTC--GCCGCGCCG 12843
|||||| |||||||| | || || || || || | || || || || ||
Sbjct 7255 CTCGCGCTGGCTGAAATTCTCACGGTATTTGATGGCGTCGGAAATGGTCTTGCAGCCCC- 7197
Query 12844 TTCGCCGACACATAGCCGAACCCGCGCAGCTTTTGTGCGAGCGTGCCG--AGGGCCGCCG 12901
||| || ||||||||| ||||||| | || || || || || || || | ||
Sbjct 7196 -ACGCGCTTACGTAGCCGAACGCGCGCAGGCTCTG-GC-AGGTTGACGCAAGCGCGGTCG 7140
Query 12902 CGACAGGCTGCGTATCGAGGCCGGGAGCGCCGAGAATGCGCGGCTTGATGCCGAGTTTC- 12960
| || ||||||||| || || || ||||||||||||||||||| | |||| || |
Sbjct 7139 CCACTTCCTGCGTATCCAGCCCCGGCACGCCGAGAATGCGCGGCTTAACGCCG-GTGACG 7081
Query 12961 GATTGCGCCGAGAGTAGCGCTTGCATGCCCGTATAAGCGCCCGTCACGGCGTCGGGTTTG 13020
| || ||||| | ||||||| || || || || | |||| |||||| ||
Sbjct 7080 GTTTTCGCCGTTAACAGCGCTTTCAGCCCGGTGTATTTG-CCGT--TTTCGTCGGTCGTG 7024
Query 13021 CCGATCACGTTG----------CT--------------CGNNNNNNNNNNNNNNNNNNNN 13056
||||| | |||| || ||
Sbjct 7023 CCGATGATGTTGGAAATGGTTTCTTTCTGCGCCGCTTCCGGGTCTGCCGGGTCGTCGACA 6964
Query 13057 CCTTCAGCGACGCGCACGACGACAGTGACGGGCTTCGCCTGTGCGGCCATCGCTTGAAGC 13116
||||| | |||||||| || ||| |||| || || ||| |||| || || || ||
Sbjct 6963 CCTTCTGGAACGCGCACCACCACAATGACCGGTTTGCACTGGTCGGCGATGGCCTGCAGG 6904
Query 13117 GTGCGCGCGAGCGTGCCCTTGTCGCCGGCCTTGCCGATCGCCGATTGAATGTTCGTCAGC 13176
| || |||||||| || | ||||| || ||||| |||| ||| | | | | | |
Sbjct 6903 GATTTTGCCAGCGTGCCTTTTTTACCGGCTTTACCGATAGCCGTTTGCACGCTGTTAATC 6844
Query 13177 AGCACGGGCGTATCGAGCGGGAACATCGAGGCGTCAGCATCGAGGGCGGTCGCGACGAGG 13236
|| || ||| | | ||||| || |||||||||||| ||| || ||| | |
Sbjct 6843 AGTACCGGCTCGTTTAAGGGGAATGTCTTTGCGTCAGCATCGCTGGCCGTGCAGACCATG 6784
Query 13237 CCGACAACGGCCGTTGATACGGTGCGAATCGGGCGCGTGCCTTCGTTAATTTCGAGTACG 13296
|||| | |||||| || |||||| ||| | ||||||||| |||||||| |||| ||
Sbjct 6783 CCGATGATGGCCGTCGAAACGGTGGAAATGGTGCGCGTGCCATCGTTAATCTCGATGACC 6724
Query 13297 CGCACGCCGTGATGGTAGTC 13316
||||||||||| |||||
Sbjct 6723 TCGACGCCGTGATGATAGTC 6704
Score = 114 bits (126), Expect = 3e-21
Identities = 172/242 (71%), Gaps = 2/242 (1%)
Strand=Plus/Minus
Query 16710 TGTTCGAGGTCGCCTTTCTGT-GCGTAAGCGAGCATCACGGCGCGCGCGGCATCGTTCAC 16768
|| || ||||||| || ||| ||||| || ||||| || || |||||||| ||||| ||
Sbjct 2986 TGGTCAAGGTCGC-TTCCTGCAGCGTAGGCCAGCATGACCGCACGCGCGGCCTCGTTGAC 2928
Query 16769 GCGTTGGCGCAACACGACTTCGCGATACGCGTTTTCCTGCAAATGAATGTTCATCGGCTC 16828
||| || ||| | | ||||| || || ||||||||||||| | | || ||||||
Sbjct 2927 GCGCTGTCGCCAGATAACTTCCCGGTAGGCGTTTTCCTGCAGCAGCTTCACCAGCGGCTC 2868
Query 16829 GGATTCGAGCGCGAGAGCCGCCGAGACTTCGGCTTGCTTGTCGGCCGGATAGAGCGCGAC 16888
||| || |||| || | || || | || | |||| ||| |||| || |||| |||
Sbjct 2867 GGACTCAAGCGACAGCGTGCGCGCGATTGCGTCCTGCTGGTCTTCCGGGTATAGCGAGAC 2808
Query 16889 GAGCGACGCCTTGCGCTCGGCGAGCAGCGTTTCATAGTCGATCGTTTCGACGATATCGGG 16948
||| | |||||| || ||| || | ||||||||||| | ||| |||| || ||
Sbjct 2807 GAGTGTCGCCTTTCGTTCGCTCAGGATGGTTTCATAGTCCAGTTCTTCCACGACGTCAGG 2748
Query 16949 CG 16950
||
Sbjct 2747 CG 2746
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 103290599476012
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