Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_015273.1 Length=32317 Score E Sequences producing significant alignments: (Bits) Value seq1001 316 4e-82 >seq1001 Length=29257 Score = 316 bits (350), Expect = 4e-82 Identities = 765/1160 (66%), Gaps = 45/1160 (4%) Strand=Plus/Minus Query 12190 TCGGTGATGCGTTGGCGCAGCATCAGGTTTTCGATCGGCGGAACGGGCGTGTAGTCGTAA 12249 ||||||||||| |||||||| |||||||||| | |||||| ||||| |||||||||||| Sbjct 7851 TCGGTGATGCGCTGGCGCAGGGTCAGGTTTTCCAGCGGCGGGACGGGGGTGTAGTCGTAA 7792 Query 12250 TCGATCGCCAGCTTGCCGGCCTTGAGCGATTCGACGGGGTTCG-CGCTGTCGTCGTACCA 12308 ||||| |||||| ||||| || || | ||| |||| ||| | | | | ||||||||| Sbjct 7791 TCGATATACAGCTTCCCGGCTTTCAGGGTTTCCACGGTGTTTGACTCCGG-GTCGTACCA 7733 Query 12309 AGCCGAGCCGCCGAGCAGATAGCCGTTTGCGATCAGCTCGCGGAATTTCGCGTTGATGCT 12368 || ||| | | | ||||||||| |||||||||||||||| || ||||| | Sbjct 7732 GCATGACCCGTCAACGATATAGCCGTTATTTTTCAGCTCGCGGAATTTGGCATTGATACC 7673 Query 12369 TTCGATCATGTCTTTCACGATCGACGGGTGCATCGGCTTGTCGACATAAACCA--TGTGT 12426 ||| ||||| | | || | | | |||||||| ||| ||| ||| Sbjct 7672 GGCGACAATGTCGCGGATAAGCGTTGCGGAAACGGGCTTGTC--CATCGCCCACGCGTGC 7615 Query 12427 GCTTCCGCCATCGTGTCGGCGAGCACTTGCGCGGTGCGCGTGTAGTTCTCGAATGCGAAC 12486 || ||||||||||||||||| ||||| ||||| ||||| |||||||| || || |||| Sbjct 7614 GCCTCCGCCATCGTGTCGGCCAGCACCTGCGCCGTGCGGGTGTAGTTTTCAAACACGAAT 7555 Query 12487 AGCGGATCATCCGAGCAGGTGCGCGAACCCCAGAAGCGATAGCCCGTCG-AGTTGATGAG 12545 | ||||| ||||||||||| || |||||||| | || |||||| | ||| || Sbjct 7554 AAAGGATCGTCCGAGCAGGTACGGTTGCCCCAGAACTTAAAG-CCGTCGTTGCGGATTAG 7496 Query 12546 CGTCGTCACATCGTTCTCGTTGAGGTAGCCGGCATCGGTCGCGGGGTCTTGCAAGTCCCA 12605 ||| ||||| || || || || | ||| ||||| || | || ||||| ||||| Sbjct 7495 CGTTGTCACCCCGGCCTGATTCAGCAGGTTGGCGTCGGTAGCCTGCTCCTGCAAATCCCA 7436 Query 12606 GAAAACATCCTTGCTGATACCCGTAACGCCATTGATGCCGACATTCGAAATCGTCTTGTG 12665 | || ||||| || || |||||||| | ||| || || || | ||| ||||| Sbjct 7435 TGAGACCGAGGCGCTGACGCCGGTGACGCCATTCACGCCAACGTTAGACAGCGTTTTGTG 7376 Query 12666 CCAGCCCGTTTCCTCGTCGATCTTGGCGCGCAAGCCGAGCGCGATCGCGGTCGCGTCNNN 12725 ||| || || |||| |||||| |||||||||| |||||||||| |||||||| Sbjct 7375 CCATCCGGTCTCCTGGTCGATTTTGGCGCGCAGGCCGAGCGCGCGGGCGGTCGCCCATGC 7316 Query 12726 NNNNNNNNNNNNNNNNNNNNNNNTGTCCCATCCGAGGAAATCCGGCCACATCACCATCAG 12785 |||||||| | || || || || || |||||||| Sbjct 7315 AATATCGGTTTCGTTCGCCGTGGTGTCCCATGCCAGAAAGTCAGGGTGAATGACCATCAG 7256 Query 12786 CTCGCGTTGGCTGAATTGCTGGCGATAGGCCATCGCCGCTTCCTTGTTC--GCCGCGCCG 12843 |||||| |||||||| | || || || || || | || || || || || Sbjct 7255 CTCGCGCTGGCTGAAATTCTCACGGTATTTGATGGCGTCGGAAATGGTCTTGCAGCCCC- 7197 Query 12844 TTCGCCGACACATAGCCGAACCCGCGCAGCTTTTGTGCGAGCGTGCCG--AGGGCCGCCG 12901 ||| || ||||||||| ||||||| | || || || || || || || | || Sbjct 7196 -ACGCGCTTACGTAGCCGAACGCGCGCAGGCTCTG-GC-AGGTTGACGCAAGCGCGGTCG 7140 Query 12902 CGACAGGCTGCGTATCGAGGCCGGGAGCGCCGAGAATGCGCGGCTTGATGCCGAGTTTC- 12960 | || ||||||||| || || || ||||||||||||||||||| | |||| || | Sbjct 7139 CCACTTCCTGCGTATCCAGCCCCGGCACGCCGAGAATGCGCGGCTTAACGCCG-GTGACG 7081 Query 12961 GATTGCGCCGAGAGTAGCGCTTGCATGCCCGTATAAGCGCCCGTCACGGCGTCGGGTTTG 13020 | || ||||| | ||||||| || || || || | |||| |||||| || Sbjct 7080 GTTTTCGCCGTTAACAGCGCTTTCAGCCCGGTGTATTTG-CCGT--TTTCGTCGGTCGTG 7024 Query 13021 CCGATCACGTTG----------CT--------------CGNNNNNNNNNNNNNNNNNNNN 13056 ||||| | |||| || || Sbjct 7023 CCGATGATGTTGGAAATGGTTTCTTTCTGCGCCGCTTCCGGGTCTGCCGGGTCGTCGACA 6964 Query 13057 CCTTCAGCGACGCGCACGACGACAGTGACGGGCTTCGCCTGTGCGGCCATCGCTTGAAGC 13116 ||||| | |||||||| || ||| |||| || || ||| |||| || || || || Sbjct 6963 CCTTCTGGAACGCGCACCACCACAATGACCGGTTTGCACTGGTCGGCGATGGCCTGCAGG 6904 Query 13117 GTGCGCGCGAGCGTGCCCTTGTCGCCGGCCTTGCCGATCGCCGATTGAATGTTCGTCAGC 13176 | || |||||||| || | ||||| || ||||| |||| ||| | | | | | | Sbjct 6903 GATTTTGCCAGCGTGCCTTTTTTACCGGCTTTACCGATAGCCGTTTGCACGCTGTTAATC 6844 Query 13177 AGCACGGGCGTATCGAGCGGGAACATCGAGGCGTCAGCATCGAGGGCGGTCGCGACGAGG 13236 || || ||| | | ||||| || |||||||||||| ||| || ||| | | Sbjct 6843 AGTACCGGCTCGTTTAAGGGGAATGTCTTTGCGTCAGCATCGCTGGCCGTGCAGACCATG 6784 Query 13237 CCGACAACGGCCGTTGATACGGTGCGAATCGGGCGCGTGCCTTCGTTAATTTCGAGTACG 13296 |||| | |||||| || |||||| ||| | ||||||||| |||||||| |||| || Sbjct 6783 CCGATGATGGCCGTCGAAACGGTGGAAATGGTGCGCGTGCCATCGTTAATCTCGATGACC 6724 Query 13297 CGCACGCCGTGATGGTAGTC 13316 ||||||||||| ||||| Sbjct 6723 TCGACGCCGTGATGATAGTC 6704 Score = 114 bits (126), Expect = 3e-21 Identities = 172/242 (71%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 16710 TGTTCGAGGTCGCCTTTCTGT-GCGTAAGCGAGCATCACGGCGCGCGCGGCATCGTTCAC 16768 || || ||||||| || ||| ||||| || ||||| || || |||||||| ||||| || Sbjct 2986 TGGTCAAGGTCGC-TTCCTGCAGCGTAGGCCAGCATGACCGCACGCGCGGCCTCGTTGAC 2928 Query 16769 GCGTTGGCGCAACACGACTTCGCGATACGCGTTTTCCTGCAAATGAATGTTCATCGGCTC 16828 ||| || ||| | | ||||| || || ||||||||||||| | | || |||||| Sbjct 2927 GCGCTGTCGCCAGATAACTTCCCGGTAGGCGTTTTCCTGCAGCAGCTTCACCAGCGGCTC 2868 Query 16829 GGATTCGAGCGCGAGAGCCGCCGAGACTTCGGCTTGCTTGTCGGCCGGATAGAGCGCGAC 16888 ||| || |||| || | || || | || | |||| ||| |||| || |||| ||| Sbjct 2867 GGACTCAAGCGACAGCGTGCGCGCGATTGCGTCCTGCTGGTCTTCCGGGTATAGCGAGAC 2808 Query 16889 GAGCGACGCCTTGCGCTCGGCGAGCAGCGTTTCATAGTCGATCGTTTCGACGATATCGGG 16948 ||| | |||||| || ||| || | ||||||||||| | ||| |||| || || Sbjct 2807 GAGTGTCGCCTTTCGTTCGCTCAGGATGGTTTCATAGTCCAGTTCTTCCACGACGTCAGG 2748 Query 16949 CG 16950 || Sbjct 2747 CG 2746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103290599476012