Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1030 145 5e-30 seq197 113 3e-20 >seq1030 Length=27445 Score = 145 bits (160), Expect = 5e-30 Identities = 172/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 34752 TTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCC 34811 || ||||| || | |||||| |||||||||| || ||| ||||| ||||| ||||| Sbjct 2671 TTACCTCCTCTAAGCCTCAACACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCG 2730 Query 34812 GAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGC 34871 || ||| | || |||| ||||||||||| || || || || ||||| |||||||| | Sbjct 2731 GACAGGGTACGGCCATCCTCCAGCTGTTTACCAGCGAAGATCAGTCGCTGCTGGTCCGGG 2790 Query 34872 GGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCA 34931 || | ||||||||||| ||||| |||||| | | || | || ||||| Sbjct 2791 GGGATACCCTCCTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTGTCGGAAGCCTCC 2850 Query 34932 ACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || || | ||| ||||| || ||||| || |||||||| |||||||||||||| Sbjct 2851 ACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTCACGAAGATCTGCATATT 2903 >seq197 Length=620651 Score = 113 bits (124), Expect = 3e-20 Identities = 157/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCA 34829 || |||||||||| ||| || || || ||||| ||||| || | | | || |||| Sbjct 446265 AATACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCC 446324 Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889 ||||||||||| ||||| || || || || ||||||||| | || | ||||||||||| Sbjct 446325 TCCAGCTGTTTACCGGCGAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCC 446384 Query 34890 CTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTAT 34945 ||||| || || || | ||||| | ||| || ||||| || | || || Sbjct 446385 TGGATCTTGGCCTTTAC--AT--TCTCGATGGTGTCCGAAGCTTCAACTTCCAGAGTGAT 446440 Query 34946 GGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| |||||||| ||||||||||| || |||||||| Sbjct 446441 GGTCTTTCCCGTCAGAGTCTTCACGAAAATCTGCAT 446476 Score = 109 bits (120), Expect = 4e-19 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| | || | || |||||||||| ||| || ||||||||||| ||||| || Sbjct 447878 CCTCCGCGCAGACGCAGTACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAT 447937 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| || || || || || || || || || || ||||||||| | || Sbjct 447938 AGGGTGCGGCCATCTTCTAGTTGCTTACCAGCGAAGATCAGACGCTGCTGGTCTGGGGGG 447997 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTC 34930 | ||||||||||| ||||| || || || | ||||| | ||| || || Sbjct 447998 ATACCCTCCTTGTCCTGGATCTTGGCCTTTAC--AT--TCTCGATGGTGTCCGAAGCTTC 448053 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || | || ||||| |||||||| ||||||||||| || |||||||| Sbjct 448054 AACTTCCAGAGTGATGGTCTTTCCCGTCAGAGTCTTCACGAAAATCTGCAT 448104 Score = 107 bits (118), Expect = 1e-18 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| |||||||||||||| ||||| || ||| | || |||| ||| Sbjct 446952 ACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 447011 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| || || || || || || || ||||||||| | || | ||||||||||| Sbjct 447012 AACTGCTTACCAGCGAAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGG 447071 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||| || || || || | || | | ||| || || | || || |||| Sbjct 447072 ATCTTAGCTTTAAC--ATTCTCGATAGTATCGGCTGGCTCGACCTCAAGAGTGATAGTTT 447129 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || || |||||||| || || ||||||||| Sbjct 447130 TACCAGTAAGAGTCTTGACGAAAATCTGCATA 447161 Score = 102 bits (112), Expect = 5e-17 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| || | | | || |||| || ||||| || ||||| || Sbjct 448399 TCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCATCCTCTAGCTGGTTGCCGGCGAAG 448458 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | ||||||||| | || | ||||| ||||| ||||| |||||| || Sbjct 448459 ATCAACCTCTGCTGGTCTGGGGGAATTCCCTCTTTGTCTTGGATCTTGGCTTTGAC--AT 448516 Query 34911 GCT-ATCGAT-TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || | ||| || || ||||| || | || ||||| |||||||| |||||||| | Sbjct 448517 TCTCAATGATGTCTGAAGCTTCAACTTCCAGAGTGATGGTCTTTCCCGTCAGAGTCTTGA 448576 Query 34969 CAAAGATCTGCATA 34982 |||||||||||||| Sbjct 448577 CAAAGATCTGCATA 448590 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| || | | | || |||| ||||||||||| || || || Sbjct 447686 TCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCATCCTCCAGCTGTTTACCAGCGAAG 447745 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || || ||||| | || | ||||||||||| ||||| || || || Sbjct 447746 ATGAGACGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCAC--AT 447803 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | || || ||||| || | ||| ||||| ||||| || ||||| || | Sbjct 447804 TCTCGATGGTGTCTGAAGCTTCAACTTCCAGGGTGATGGTCTTTCCTGTCAGAGTTTTGA 447863 Query 34969 CAAAGATCTGCATA 34982 | || ||||||||| Sbjct 447864 CGAAAATCTGCATA 447877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324626502089232