Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_015457.1 Length=165919 Score E Sequences producing significant alignments: (Bits) Value seq236 214 2e-50 seq637 156 4e-33 seq895 82.4 8e-11 >seq236 Length=545527 Score = 214 bits (236), Expect = 2e-50 Identities = 157/183 (86%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 59801 TTACAGGCTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 59860 ||||||||| |||||||||||||| ||||||||||||||||||||||| || |||||||| Sbjct 30895 TTACAGGCTTTCAGTAAAGGTACGCGCGATAACGTCGCGCTGCTGTTCTGGGGTCAGAGA 30836 Query 59861 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 59920 ||| ||||| || |||||||| || || || |||||||||||||| |||||||| || || Sbjct 30835 GTTGAAGCGTACCGCATAACCAGACACGCGAATGGTCAGCTGCGGGTATTTTTCTGGGTG 30776 Query 59921 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCACC 59980 || ||| || || ||| ||||| || ||||| ||||||||||| ||||| |||||||| Sbjct 30775 CTCAACCGCGTCCATCAGCGTTTCGCGGCGCAGTACGTTTACGTTAAGGTGCTGACCACC 30716 Query 59981 TTC 59983 ||| Sbjct 30715 TTC 30713 >seq637 Length=122170 Score = 156 bits (172), Expect = 4e-33 Identities = 146/186 (78%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 59801 TTACAGGCTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 59860 ||||| | || ||| || ||||| | ||||||||| |||||||||| |||||| || Sbjct 107106 TTACATGGACTGAGTGAAAGTACGGGTGATAACGTCCTGCTGCTGTTCTTTAGTCAGGGA 107165 Query 59861 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 59920 |||||| || ||||| || || |||||||||||||||||||| |||||||| || ||||| Sbjct 107166 GTTAAAACGTACTGCGTAGCCAGATACACGGATGGTCAGCTGAGGATATTTCTCAGGATG 107225 Query 59921 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCACC 59980 | | ||||| ||| ||||||| || ||||| ||||||||||| |||||||| Sbjct 107226 TTCCATCGCATCGAGCAGCATTTCACGGTTCATTACGTTCACGTTCAGGTGCTGACCACC 107285 Query 59981 TTCAAT 59986 ||| || Sbjct 107286 TTCGAT 107291 >seq895 Length=39754 Score = 82.4 bits (90), Expect = 8e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 59814 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 59873 ||||| || || | || || || ||||||| || | ||||| | ||||| || || Sbjct 11880 GTAAACGTTCGCGAAATCACATCCTGCTGCTGCTCGCGCGTCAGGGCATTAAACCGCACC 11939 Query 59874 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 59933 ||||| || || || ||||||||||| | ||| || || || |||||| || ||||| Sbjct 11940 GCATAGCCCGAGACGCGGATGGTCAGGTTCGGGTAGTTCTCGGGATGCGCAATGGCATCG 11999 Query 59934 TCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCACCTTCAAT 59986 || | || || || ||||| ||||||||||| || || || ||||| Sbjct 12000 AGGAGCATCTCCCGGTTCATCACGTTAACGTTCAGGTGCTGCCCGCCCTCAAT 12052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530800896522960