Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq486 217 2e-51 seq270 100 3e-16 seq65 96.9 4e-15 >seq486 Length=217039 Score = 217 bits (240), Expect = 2e-51 Identities = 1012/1608 (63%), Gaps = 32/1608 (2%) Strand=Plus/Plus Query 46974 TTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCA 47033 || || ||||| || | |||| ||| || | || || |||||||||||||| ||| Sbjct 174756 TTGTCAACAGTGAATTGTATTGCATTTACAGCAGGCTTAGTACGTAAATAATACATTCCA 174815 Query 47034 GTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGT 47093 ||||| || || | |||| |||||||||| || || ||||| ||| | ||| Sbjct 174816 GTCTTCAAGCCCATTTTCCACGCATAGAAATGAATCGATGTCAATTTTCCATAGTTTGGT 174875 Query 47094 TCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCC 47153 |||| | ||| || |||| ||||||||||| ||||| || ||||| | ||| || ||| Sbjct 174876 TCTGCTACATGGATGTTAAATGATTGACTCTGGTCAATGAAAGCACCACGATCCGCGGCC 174935 Query 47154 ATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCT 47213 || | | | | | | ||||||||| || || || |||| | | | || ||| Sbjct 174936 ATTTGGATTGTGGTCTTCACAGATATCTCCCACACAGTCTTGTAAAGATCTCTTATTTCT 174995 Query 47214 TCTGGGAGA---TTAGTATTTTGAATAGATCCTCCgttttctataattttgttttttaat 47270 | || | | | | || ||||| ||||| ||| | |||||| ||||| | Sbjct 174996 TTGGGAATACTTTCAATAGACTGAATGGATCCATTGTTGTGTATAATGAGATTTTTCATA 175055 Query 47271 tcatttgaccaaagttttcgttcagttaatgtttttaaA--AGATGAGGATTAACAATTT 47328 |||| ||| | | || || | | | || || ||| | || || | | Sbjct 175056 TCATCATCCCATAAATCAGCCTCGGTGA--GATCGCGAAGCAGGTGATGGTTGACCACCT 175113 Query 47329 GAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATT 47388 | ||||||||||| || ||||| | || || || || |||| || | |||| Sbjct 175114 GGAATTCTCCAGAAAGAACTCTTCTTTGGTAAATGTTTGAAGTGAATGGCTCAAATGATT 175173 Query 47389 CATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTAT 47448 |||| || |||| ||| || ||||| || || || ||||||| || | || | | Sbjct 175174 CATTGTTGCCAAGAATCTGTGCAGTGGAGGCGGTGGGCATGGGGGCCAGCAACAGAGAGT 175233 Query 47449 TTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATG 47508 | | | |||| ||| |||| |||| ||||| || |||| || Sbjct 175234 TCCGCAGGCCATGTTTCGCGATCTTCTGCTTCAGAGCACTCCAGTCCCACAGGTCTG-TG 175292 Query 47509 GAACAACATT--CCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATA 47566 | | || ||| | |||||||| | ||||||| ||| |||| ||||| ||| Sbjct 175293 G-GTGTCTTTCCCCACATTTCATATTGCAATATTCCTTCACTGGCCGGACAACCAGCATA 175351 Query 47567 TGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATA 47626 |||| |||| ||| | || || |||||||| || ||||| || || | |||||| Sbjct 175352 CGTTTCATAAACGCCGAGTTTTTCGGCCAGTTCACAGCTAGCTTCTAAAGCCCCATAATA 175411 Query 47627 TATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATANNN 47686 || ||||||||||||| | || || ||| ||| || || ||||| Sbjct 175412 GATGGTTTCAAATATTTGTTGATTGAGCTTCTGGGCTCCTTCACTCTCGTAAGGAAGGCG 175471 Query 47687 NNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTT 47746 || | ||| |||| ||||| || ||||| || || |||| || | | Sbjct 175472 CATCAATACAAAAGCATCGGCCAGACCTTGGACGCCAATGCCGATAGGTCGGTGCCTCAT 175531 Query 47747 ATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANN 47806 ||||| | |||||||| | ||||| | || | ||| ||||| || || || Sbjct 175532 GTTAGACTTTTTCGCTTCTGGGACGGGATAGTAATTAACATCGATAATCTTGTTCAGGTT 175591 Query 47807 NNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATTT---AT 47863 | || | ||| ||| | ||||||| | | |||||| | Sbjct 175592 CTCAGTTATGATTTTGGTCACTTGTTTTAGTTTCTCAAAATCATATGTTTTATTTTCGGT 175651 Query 47864 AACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGT 47923 |||||| | || | || || || || | || || |||||||| |||| | | || Sbjct 175652 TACAAACATGTTGACAGCAATTGACGCCAAGTTGCAAACAGCTACTTCATCAGCAGATGT 175711 Query 47924 ATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT 47983 || | | || || | |||||||| | |||||||| || |||||||| | ||||| Sbjct 175712 GTACTCAACAATCTCCGTGCATAGATTGCTGCATTTGATGGTTCCCAAATTCTTTTGATT 175771 Query 47984 ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGA 48043 | |||| ||||| || ||||||||||| | || |||||||| |||| || | Sbjct 175772 GCTCTTTCTGTTGCATGCATCTTTGTAAAGCATGTATGGAGTTCCAGTCTCTACTTGTGC 175831 Query 48044 TTCAATGATAGATTTCCAAA------CAGTCCTAGCCTTTATAACAGCTCTAGCTTTATT 48097 ||||| |||| ||||| | || | | ||| ||||| ||| || Sbjct 175832 CTCAATAATAGCCTTCCATAGGATTTGAGCGCGGACTTTTTTAACAAACCTACCT----- 175886 Query 48098 ATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATC-CCCATACACATTATCTAACC 48156 || ||||| ||||| |||||| ||||||||||| ||| ||| || | | || | Sbjct 175887 -TCTTGTTCATATTTCTGATATAATGCATCAAATTCATCTCCCCAACA-ATCAGCCAAGC 175944 Query 48157 CAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAA 48216 |||| | || | ||| ||||| | ||| ||||| | || | || || |||| | Sbjct 175945 CAGGGCTGTCGTGAGGGCACATAAGGCTCCACTCCTCGTTGTTCTCAACCCTCTTCATGA 176004 Query 48217 ATATATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCA 48275 ||| ||||| ||||| ||||| ||| || | || | | | | ||| || ||||| Sbjct 176005 ATAGATCTGAGATCCACAGAGC-ATAGAACAGCTCTCGCGCGCGCACTTCCTCTTTGCCC 176063 Query 48276 CTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATT 48335 | ||| | || | || || || || | ||| ||||| ||||| || || | || | Sbjct 176064 GTGTTCTTCTTCAAGTCTAGGAACTCGAATATGTCAGCGTGCCACGGCTCGAGGTAGACG 176123 Query 48336 GCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAA 48395 || | | || || || || || || || || || | || | || || ||||| || Sbjct 176124 GCGAAGGCGCCGGGCCGCTTGTTGCCGCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTAC 176183 Query 48396 ACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCA 48455 || | | ||| || || | || || || | || || || |||| || || | || Sbjct 176184 ACGCGCAGCATGGGCACCAGCCCGTTGGAGACGCCGTTCGTGCCCGCGATGTAGGTGCCT 176243 Query 48456 CTAGCTCTTATATTACTAA-TTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGC 48514 | ||||| || | || |||| | ||||| || || || ||| ||||||| || Sbjct 176244 TTCGCTCTGATGCAATGAACATGAACT-CCTATGCCGCCCGCGGATTTGGATATTAATGC 176302 Query 48515 ACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCAT 48562 |||| | || || || || || || ||||| || || || || |||| Sbjct 176303 ACACTGCTTCAGAGTGTCGTAGATACCTTCGATGCTGTCGTCCTTCAT 176350 >seq270 Length=486759 Score = 100 bits (110), Expect = 3e-16 Identities = 232/347 (67%), Gaps = 7/347 (2%) Strand=Plus/Minus Query 136649 CCAATGTTGGCAGAATCATGTGAATCTGTAGATAAAGCATTTAAAAAGTTTCCAAATGGA 136708 || ||||| || ||| |||| | || || || | ||| | || || | ||| |||||| Sbjct 121679 CCGATGTTAGCCGAAGCATGCAAGTCCGTTGAAATGGCAATGAAGAAATGTCCTAATGGA 121620 Query 136709 ATATTTGCAGAAATAAAATATGACGGAGAACGTGTACAGGTTCACAAGAATGGAAACCAC 136768 || || | ||||| |||||||| || ||| | || || || |||||||| || | | Sbjct 121619 ATGTTCTCTGAAATTAAATATGATGGTGAAAGAGTCCAAGTACACAAGAAGGGGCATGAA 121560 Query 136769 TTT--GCATTTTTTAGTAGAAACATGAAACCCGTAACAAAACATAAAGTTGATTATCTTA 136826 ||| | | |||| | ||| ||||||| || | ||||||||| | ||| Sbjct 121559 TTTAAGTACTTTTCA--AGATCATTGAAACCTGTGATGGCACATAAAGTCAGCCACTTTA 121502 Query 136827 ATGAGTATATACCTAAAGCCTTTAAAAATGTATCATCTCTTATTTTAGATTCAGAAATAG 136886 | || ||| |||| ||||| || || | | ||| ||||||||| | ||| || Sbjct 121501 AAGATTATCTACCGAAAGCATTCCTCAAAGGTGAAGATCTGATTTTAGATGCGGAAGTAC 121442 Query 136887 TACTAGTAGATAAAAATAAT---AAACCATTACCATTTGGCAGTTTGGGTATACATAAAA 136943 | | || ||| || | | ||||| || |||||||||| | | || ||||| || Sbjct 121441 TTATGGTTGATGTGAAGACTGGGAAACCTTTGCCATTTGGCACTCTTGGCATACACAAGC 121382 Query 136944 AGAAGGAATATAATGATTCATCACTATGTTTATTTGTATTTGATTGT 136990 | | || || |||| | ||| |||| || ||||||||||| ||| Sbjct 121381 AATCAGCATTTACTGATGCTTCAGTATGCTTGTTTGTATTTGACTGT 121335 >seq65 Length=1244346 Score = 96.9 bits (106), Expect = 4e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| ||||||||||| || || | || ||||| || ||||| |||| Sbjct 631695 CCTCATCTCTGGAGATCAATTCATTGCTGAAGGTCAGTCCGGGCATGAGCCCTCTCTTTT 631636 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | |||||| || || || || ||||| ||||| || || || ||||| || || | Sbjct 631635 TAAGCCAGAAGATGGATGCGAAACTGCCAGAGAAGAAGATGCCCTCAACTGCCGCGAATG 631576 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 | |||| |||||| || | | || || | ||||| | || ||||| |||| Sbjct 631575 CTACTATTCTTTCACCGAATGTTGCGGTCTTGCTGCCGATCCACTGCATCGCCCAGTCAG 631516 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205 ||||||| |||||||| || | ||||| | || ||| || || Sbjct 631515 CCTTCTTCTTTACACAGGGAAGGGTCTCAACAGCATTGAACAG 631473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562096194710160