Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq486 217 2e-51
seq270 100 3e-16
seq65 96.9 4e-15
>seq486
Length=217039
Score = 217 bits (240), Expect = 2e-51
Identities = 1012/1608 (63%), Gaps = 32/1608 (2%)
Strand=Plus/Plus
Query 46974 TTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCA 47033
|| || ||||| || | |||| ||| || | || || |||||||||||||| |||
Sbjct 174756 TTGTCAACAGTGAATTGTATTGCATTTACAGCAGGCTTAGTACGTAAATAATACATTCCA 174815
Query 47034 GTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGT 47093
||||| || || | |||| |||||||||| || || ||||| ||| | |||
Sbjct 174816 GTCTTCAAGCCCATTTTCCACGCATAGAAATGAATCGATGTCAATTTTCCATAGTTTGGT 174875
Query 47094 TCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCC 47153
|||| | ||| || |||| ||||||||||| ||||| || ||||| | ||| || |||
Sbjct 174876 TCTGCTACATGGATGTTAAATGATTGACTCTGGTCAATGAAAGCACCACGATCCGCGGCC 174935
Query 47154 ATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCT 47213
|| | | | | | | ||||||||| || || || |||| | | | || |||
Sbjct 174936 ATTTGGATTGTGGTCTTCACAGATATCTCCCACACAGTCTTGTAAAGATCTCTTATTTCT 174995
Query 47214 TCTGGGAGA---TTAGTATTTTGAATAGATCCTCCgttttctataattttgttttttaat 47270
| || | | | | || ||||| ||||| ||| | |||||| ||||| |
Sbjct 174996 TTGGGAATACTTTCAATAGACTGAATGGATCCATTGTTGTGTATAATGAGATTTTTCATA 175055
Query 47271 tcatttgaccaaagttttcgttcagttaatgtttttaaA--AGATGAGGATTAACAATTT 47328
|||| ||| | | || || | | | || || ||| | || || | |
Sbjct 175056 TCATCATCCCATAAATCAGCCTCGGTGA--GATCGCGAAGCAGGTGATGGTTGACCACCT 175113
Query 47329 GAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATT 47388
| ||||||||||| || ||||| | || || || || |||| || | ||||
Sbjct 175114 GGAATTCTCCAGAAAGAACTCTTCTTTGGTAAATGTTTGAAGTGAATGGCTCAAATGATT 175173
Query 47389 CATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTAT 47448
|||| || |||| ||| || ||||| || || || ||||||| || | || | |
Sbjct 175174 CATTGTTGCCAAGAATCTGTGCAGTGGAGGCGGTGGGCATGGGGGCCAGCAACAGAGAGT 175233
Query 47449 TTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATG 47508
| | | |||| ||| |||| |||| ||||| || |||| ||
Sbjct 175234 TCCGCAGGCCATGTTTCGCGATCTTCTGCTTCAGAGCACTCCAGTCCCACAGGTCTG-TG 175292
Query 47509 GAACAACATT--CCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATA 47566
| | || ||| | |||||||| | ||||||| ||| |||| ||||| |||
Sbjct 175293 G-GTGTCTTTCCCCACATTTCATATTGCAATATTCCTTCACTGGCCGGACAACCAGCATA 175351
Query 47567 TGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATA 47626
|||| |||| ||| | || || |||||||| || ||||| || || | ||||||
Sbjct 175352 CGTTTCATAAACGCCGAGTTTTTCGGCCAGTTCACAGCTAGCTTCTAAAGCCCCATAATA 175411
Query 47627 TATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATANNN 47686
|| ||||||||||||| | || || ||| ||| || || |||||
Sbjct 175412 GATGGTTTCAAATATTTGTTGATTGAGCTTCTGGGCTCCTTCACTCTCGTAAGGAAGGCG 175471
Query 47687 NNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTT 47746
|| | ||| |||| ||||| || ||||| || || |||| || | |
Sbjct 175472 CATCAATACAAAAGCATCGGCCAGACCTTGGACGCCAATGCCGATAGGTCGGTGCCTCAT 175531
Query 47747 ATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANN 47806
||||| | |||||||| | ||||| | || | ||| ||||| || || ||
Sbjct 175532 GTTAGACTTTTTCGCTTCTGGGACGGGATAGTAATTAACATCGATAATCTTGTTCAGGTT 175591
Query 47807 NNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATTT---AT 47863
| || | ||| ||| | ||||||| | | |||||| |
Sbjct 175592 CTCAGTTATGATTTTGGTCACTTGTTTTAGTTTCTCAAAATCATATGTTTTATTTTCGGT 175651
Query 47864 AACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGT 47923
|||||| | || | || || || || | || || |||||||| |||| | | ||
Sbjct 175652 TACAAACATGTTGACAGCAATTGACGCCAAGTTGCAAACAGCTACTTCATCAGCAGATGT 175711
Query 47924 ATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT 47983
|| | | || || | |||||||| | |||||||| || |||||||| | |||||
Sbjct 175712 GTACTCAACAATCTCCGTGCATAGATTGCTGCATTTGATGGTTCCCAAATTCTTTTGATT 175771
Query 47984 ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGA 48043
| |||| ||||| || ||||||||||| | || |||||||| |||| || |
Sbjct 175772 GCTCTTTCTGTTGCATGCATCTTTGTAAAGCATGTATGGAGTTCCAGTCTCTACTTGTGC 175831
Query 48044 TTCAATGATAGATTTCCAAA------CAGTCCTAGCCTTTATAACAGCTCTAGCTTTATT 48097
||||| |||| ||||| | || | | ||| ||||| ||| ||
Sbjct 175832 CTCAATAATAGCCTTCCATAGGATTTGAGCGCGGACTTTTTTAACAAACCTACCT----- 175886
Query 48098 ATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATC-CCCATACACATTATCTAACC 48156
|| ||||| ||||| |||||| ||||||||||| ||| ||| || | | || |
Sbjct 175887 -TCTTGTTCATATTTCTGATATAATGCATCAAATTCATCTCCCCAACA-ATCAGCCAAGC 175944
Query 48157 CAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAA 48216
|||| | || | ||| ||||| | ||| ||||| | || | || || |||| |
Sbjct 175945 CAGGGCTGTCGTGAGGGCACATAAGGCTCCACTCCTCGTTGTTCTCAACCCTCTTCATGA 176004
Query 48217 ATATATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCA 48275
||| ||||| ||||| ||||| ||| || | || | | | | ||| || |||||
Sbjct 176005 ATAGATCTGAGATCCACAGAGC-ATAGAACAGCTCTCGCGCGCGCACTTCCTCTTTGCCC 176063
Query 48276 CTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATT 48335
| ||| | || | || || || || | ||| ||||| ||||| || || | || |
Sbjct 176064 GTGTTCTTCTTCAAGTCTAGGAACTCGAATATGTCAGCGTGCCACGGCTCGAGGTAGACG 176123
Query 48336 GCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAA 48395
|| | | || || || || || || || || || | || | || || ||||| ||
Sbjct 176124 GCGAAGGCGCCGGGCCGCTTGTTGCCGCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTAC 176183
Query 48396 ACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCA 48455
|| | | ||| || || | || || || | || || || |||| || || | ||
Sbjct 176184 ACGCGCAGCATGGGCACCAGCCCGTTGGAGACGCCGTTCGTGCCCGCGATGTAGGTGCCT 176243
Query 48456 CTAGCTCTTATATTACTAA-TTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGC 48514
| ||||| || | || |||| | ||||| || || || ||| ||||||| ||
Sbjct 176244 TTCGCTCTGATGCAATGAACATGAACT-CCTATGCCGCCCGCGGATTTGGATATTAATGC 176302
Query 48515 ACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCAT 48562
|||| | || || || || || || ||||| || || || || ||||
Sbjct 176303 ACACTGCTTCAGAGTGTCGTAGATACCTTCGATGCTGTCGTCCTTCAT 176350
>seq270
Length=486759
Score = 100 bits (110), Expect = 3e-16
Identities = 232/347 (67%), Gaps = 7/347 (2%)
Strand=Plus/Minus
Query 136649 CCAATGTTGGCAGAATCATGTGAATCTGTAGATAAAGCATTTAAAAAGTTTCCAAATGGA 136708
|| ||||| || ||| |||| | || || || | ||| | || || | ||| ||||||
Sbjct 121679 CCGATGTTAGCCGAAGCATGCAAGTCCGTTGAAATGGCAATGAAGAAATGTCCTAATGGA 121620
Query 136709 ATATTTGCAGAAATAAAATATGACGGAGAACGTGTACAGGTTCACAAGAATGGAAACCAC 136768
|| || | ||||| |||||||| || ||| | || || || |||||||| || | |
Sbjct 121619 ATGTTCTCTGAAATTAAATATGATGGTGAAAGAGTCCAAGTACACAAGAAGGGGCATGAA 121560
Query 136769 TTT--GCATTTTTTAGTAGAAACATGAAACCCGTAACAAAACATAAAGTTGATTATCTTA 136826
||| | | |||| | ||| ||||||| || | ||||||||| | |||
Sbjct 121559 TTTAAGTACTTTTCA--AGATCATTGAAACCTGTGATGGCACATAAAGTCAGCCACTTTA 121502
Query 136827 ATGAGTATATACCTAAAGCCTTTAAAAATGTATCATCTCTTATTTTAGATTCAGAAATAG 136886
| || ||| |||| ||||| || || | | ||| ||||||||| | ||| ||
Sbjct 121501 AAGATTATCTACCGAAAGCATTCCTCAAAGGTGAAGATCTGATTTTAGATGCGGAAGTAC 121442
Query 136887 TACTAGTAGATAAAAATAAT---AAACCATTACCATTTGGCAGTTTGGGTATACATAAAA 136943
| | || ||| || | | ||||| || |||||||||| | | || ||||| ||
Sbjct 121441 TTATGGTTGATGTGAAGACTGGGAAACCTTTGCCATTTGGCACTCTTGGCATACACAAGC 121382
Query 136944 AGAAGGAATATAATGATTCATCACTATGTTTATTTGTATTTGATTGT 136990
| | || || |||| | ||| |||| || ||||||||||| |||
Sbjct 121381 AATCAGCATTTACTGATGCTTCAGTATGCTTGTTTGTATTTGACTGT 121335
>seq65
Length=1244346
Score = 96.9 bits (106), Expect = 4e-15
Identities = 155/223 (70%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| ||||| ||||||||||| || || | || ||||| || ||||| ||||
Sbjct 631695 CCTCATCTCTGGAGATCAATTCATTGCTGAAGGTCAGTCCGGGCATGAGCCCTCTCTTTT 631636
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | |||||| || || || || ||||| ||||| || || || ||||| || || |
Sbjct 631635 TAAGCCAGAAGATGGATGCGAAACTGCCAGAGAAGAAGATGCCCTCAACTGCCGCGAATG 631576
Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162
| |||| |||||| || | | || || | ||||| | || ||||| ||||
Sbjct 631575 CTACTATTCTTTCACCGAATGTTGCGGTCTTGCTGCCGATCCACTGCATCGCCCAGTCAG 631516
Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205
||||||| |||||||| || | ||||| | || ||| || ||
Sbjct 631515 CCTTCTTCTTTACACAGGGAAGGGTCTCAACAGCATTGAACAG 631473
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562096194710160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |