Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq78 122 7e-22
seq937 118 9e-21
seq44 93.3 3e-13
>seq78
Length=1090682
Score = 122 bits (134), Expect = 7e-22
Identities = 247/359 (69%), Gaps = 6/359 (2%)
Strand=Plus/Minus
Query 550181 GATGCTAAACGTTTAATTGGAAG-AAGTTTTAATGATTCGACTGTTCAGGCAGATATGAA 550239
||||| || ||| | |||||| | |||||| || ||| | || || || || || |||||
Sbjct 326140 GATGCCAAGCGTCTTATTGGACGCAAGTTTGAA-GATGCTACCGTCCAAGCCGACATGAA 326082
Query 550240 GCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTA-CTCATG 550298
||| |||||||| || | || | || | || || || | || ||| || | |
Sbjct 326081 GCACTGGCCTTTTGAAGTGGTCAGTGATGGAGGCAAGCCAAAGATC-AAGGTAGCATACA 326023
Query 550299 AAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGA 550358
| ||| | ||| || | || ||| || || || ||||| | | |||||||
Sbjct 326022 AGGGAGAAGACAAAACCTTCTTCCCTGAAGAAGTTAGCTCAATGGTGCTTACAAAAATGA 325963
Query 550359 AACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAG 550418
| |||| || |||| | ||| || || | |||||||||| || || || |
Sbjct 325962 AGGAAACTGCTGAGGCTTACCTCGGTAAAACGGTGCAGAATGCAGTAATCACGGTTCCCG 325903
Query 550419 CATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGG-ACGTATTGCTGGACTT 550477
| ||||| |||||||||||| | || || || |||||| | || ||| || |||| |
Sbjct 325902 CCTATTTCAATGACTCACAAAGGCAGGCCACAAAAGATTCGGGTACG-ATCTCTGGCTTA 325844
Query 550478 AATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536
|||||||| ||||||||||| ||||| ||||||||||| |||| || || || || ||
Sbjct 325843 AATGTTCTCCGTATTATCAACGAACCGACTGCTGCTGCGATTGCTTACGGTCTCGACAA 325785
>seq937
Length=34633
Score = 118 bits (130), Expect = 9e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 550025 TGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGA 550084
||||||||||||||| || | || ||||| ||||| || || ||||||||| |
Sbjct 33733 TGTGTTGGTGTTTGGGAATCCGAGCGTGTCGAAATCATTGCTAACGAGCAAGGTAACCGT 33792
Query 550085 ACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAA 550144
|| ||||| ||||||||| ||||| | || |||||| | | || |||||||| || ||
Sbjct 33793 ACCACTCCTTCTTATGTTGCTTTCTCCGACTCTGAACGTCTCGTCGGTGATGCCGCCAAG 33852
Query 550145 TATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGA 550204
| ||||| | || || | || || | || |||||||| ||| | ||||| |
Sbjct 33853 AACCAAGCTGCCATGAACCCCAAGAACACCGTCTTCGATGCTAAGCGTCTTATTGGTCGC 33912
Query 550205 AGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTC 550252
|||| ||||| | |||| |||| || |||||| | |||||||||
Sbjct 33913 CGTTTCGATGATGCCGATGTTAAGGCTGACATGAAGAACTGGCCTTTC 33960
>seq44
Length=1468026
Score = 93.3 bits (102), Expect = 3e-13
Identities = 180/264 (68%), Gaps = 4/264 (2%)
Strand=Plus/Minus
Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050
|||| |||| || ||| | ||||| || ||| ||||| || || ||||| | || ||
Sbjct 1242809 AGCTGTAGGAATCGATCTTGGAACGACGTATTCGTGTGTGGGAGTGTGGCAGCACGGAAA 1242750
Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110
|| ||||| || || || || || || ||||| ||||||||||| ||||| |||||||
Sbjct 1242749 CGTGGAAATCATCGCGAACGACCAGGGCAACAGGACTACTCCATCATATGTGGCTTTCAC 1242690
Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA--AGCCACTGGTAATCCTACC 550168
||| || || | | | || |||||||| || | || | | ||| || || | |
Sbjct 1242689 GGACACGGAGCGGCTGATCGGAGATGCAGCCAAGAACCAGGTGGCGCTG--AACCCCAAC 1242632
Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAG 550228
|| || | || || || || | | || ||| | | || | || | | | ||
Sbjct 1242631 AACACCGTGTTCGACGCAAAGAGACTCATCGGACGTAAGTTCGACGACCCCAAGATACAA 1242572
Query 550229 GCAGATATGAAGCATTGGCCTTTC 550252
||||| |||||||| |||||||||
Sbjct 1242571 GCAGACATGAAGCACTGGCCTTTC 1242548
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029201125189060
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |