Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq78 122 7e-22 seq937 118 9e-21 seq44 93.3 3e-13 >seq78 Length=1090682 Score = 122 bits (134), Expect = 7e-22 Identities = 247/359 (69%), Gaps = 6/359 (2%) Strand=Plus/Minus Query 550181 GATGCTAAACGTTTAATTGGAAG-AAGTTTTAATGATTCGACTGTTCAGGCAGATATGAA 550239 ||||| || ||| | |||||| | |||||| || ||| | || || || || || ||||| Sbjct 326140 GATGCCAAGCGTCTTATTGGACGCAAGTTTGAA-GATGCTACCGTCCAAGCCGACATGAA 326082 Query 550240 GCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTA-CTCATG 550298 ||| |||||||| || | || | || | || || || | || ||| || | | Sbjct 326081 GCACTGGCCTTTTGAAGTGGTCAGTGATGGAGGCAAGCCAAAGATC-AAGGTAGCATACA 326023 Query 550299 AAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGA 550358 | ||| | ||| || | || ||| || || || ||||| | | ||||||| Sbjct 326022 AGGGAGAAGACAAAACCTTCTTCCCTGAAGAAGTTAGCTCAATGGTGCTTACAAAAATGA 325963 Query 550359 AACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAG 550418 | |||| || |||| | ||| || || | |||||||||| || || || | Sbjct 325962 AGGAAACTGCTGAGGCTTACCTCGGTAAAACGGTGCAGAATGCAGTAATCACGGTTCCCG 325903 Query 550419 CATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGG-ACGTATTGCTGGACTT 550477 | ||||| |||||||||||| | || || || |||||| | || ||| || |||| | Sbjct 325902 CCTATTTCAATGACTCACAAAGGCAGGCCACAAAAGATTCGGGTACG-ATCTCTGGCTTA 325844 Query 550478 AATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 |||||||| ||||||||||| ||||| ||||||||||| |||| || || || || || Sbjct 325843 AATGTTCTCCGTATTATCAACGAACCGACTGCTGCTGCGATTGCTTACGGTCTCGACAA 325785 >seq937 Length=34633 Score = 118 bits (130), Expect = 9e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 550025 TGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGA 550084 ||||||||||||||| || | || ||||| ||||| || || ||||||||| | Sbjct 33733 TGTGTTGGTGTTTGGGAATCCGAGCGTGTCGAAATCATTGCTAACGAGCAAGGTAACCGT 33792 Query 550085 ACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAA 550144 || ||||| ||||||||| ||||| | || |||||| | | || |||||||| || || Sbjct 33793 ACCACTCCTTCTTATGTTGCTTTCTCCGACTCTGAACGTCTCGTCGGTGATGCCGCCAAG 33852 Query 550145 TATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGA 550204 | ||||| | || || | || || | || |||||||| ||| | ||||| | Sbjct 33853 AACCAAGCTGCCATGAACCCCAAGAACACCGTCTTCGATGCTAAGCGTCTTATTGGTCGC 33912 Query 550205 AGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTC 550252 |||| ||||| | |||| |||| || |||||| | ||||||||| Sbjct 33913 CGTTTCGATGATGCCGATGTTAAGGCTGACATGAAGAACTGGCCTTTC 33960 >seq44 Length=1468026 Score = 93.3 bits (102), Expect = 3e-13 Identities = 180/264 (68%), Gaps = 4/264 (2%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||| |||| || ||| | ||||| || ||| ||||| || || ||||| | || || Sbjct 1242809 AGCTGTAGGAATCGATCTTGGAACGACGTATTCGTGTGTGGGAGTGTGGCAGCACGGAAA 1242750 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || ||||| || || || || || || ||||| ||||||||||| ||||| ||||||| Sbjct 1242749 CGTGGAAATCATCGCGAACGACCAGGGCAACAGGACTACTCCATCATATGTGGCTTTCAC 1242690 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA--AGCCACTGGTAATCCTACC 550168 ||| || || | | | || |||||||| || | || | | ||| || || | | Sbjct 1242689 GGACACGGAGCGGCTGATCGGAGATGCAGCCAAGAACCAGGTGGCGCTG--AACCCCAAC 1242632 Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAG 550228 || || | || || || || | | || ||| | | || | || | | | || Sbjct 1242631 AACACCGTGTTCGACGCAAAGAGACTCATCGGACGTAAGTTCGACGACCCCAAGATACAA 1242572 Query 550229 GCAGATATGAAGCATTGGCCTTTC 550252 ||||| |||||||| ||||||||| Sbjct 1242571 GCAGACATGAAGCACTGGCCTTTC 1242548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029201125189060