Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_016073.1 Length=157950 Score E Sequences producing significant alignments: (Bits) Value seq974 98.7 1e-15 >seq974 Length=31311 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 54169 CCGATGCCAGCACGTTTGGAAACATAATCCACGATGCTTTTCGCAGTGGCATTAATTGAG 54228 ||||| || ||||| | |||||| || | ||||||| | | ||||| || || || Sbjct 214 CCGATACCGGCACGCTGGGAAACGTATTTCACGATGGCGCTGGACGTGGCGTTGATGGAA 273 Query 54229 TCCAATGTGTCACCAGTTTTGATCAATACACAAGAGCTGAACTGTCGGGTCGGGGTGCGG 54288 |||| |||||||| | ||||| ||| || ||||||||||| ||||| |||||||| Sbjct 274 TCCAGGCTGTCACCACACTCGATCAGTACGCAGGAGCTGAACTGACGGGTTGGGGTGCGC 333 Query 54289 ACGCCGGACATAATAGGTGTTGGAAGA 54315 ||||| ||||| || || || || ||| Sbjct 334 ACGCCAGACATGATTGGCGTAGGCAGA 360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505300668378400