Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_016158.1 Length=49576 Score E Sequences producing significant alignments: (Bits) Value seq997 282 1e-71 seq1547 111 5e-20 seq952 87.8 6e-13 seq955 86.0 2e-12 seq960 84.2 7e-12 >seq997 Length=29618 Score = 282 bits (312), Expect = 1e-71 Identities = 190/211 (90%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 44776 ATTGACTGCAGGAATAAGTTCGGCGTAATTTATTTCTGTGGTGAATCCTTTCTAAGCGAA 44835 |||||| | |||| | || ||||||||||| ||||||||||||||||||||||| Sbjct 21957 ATTGACCGGGTGAATGAATTAATCGTAATTTATTCACGTGGTGAATCCTTTCTAAGCGAA 21898 Query 44836 AGGGCGTTCCAGCCAACTGCTATCTGCAGGTATGCGCGCGACTTTGCTGGCTGGAGTAGA 44895 |||||||||||| ||||||||||||||||||||||||||| |||||||| |||| ||||| Sbjct 21897 AGGGCGTTCCAGTCAACTGCTATCTGCAGGTATGCGCGCGTCTTTGCTGACTGGGGTAGA 21838 Query 44896 GTCACCGGGAGGCACCCGGCACCATGACAACAACAATAC-AGTTTCAAATTCCTTGAGAG 44954 ||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| Sbjct 21837 GTCACCGGGAGGCACCCGGCACCATGAAAACAACAACACAAGTTTCAAATTCCTTGAGAG 21778 Query 44955 CCTGCCGTAAAAAGCAGGCCtttttttATGA 44985 |||||| ||||| |||||||||||||||||| Sbjct 21777 CCTGCCATAAAACGCAGGCCTTTTTTTATGA 21747 Score = 152 bits (168), Expect = 2e-32 Identities = 266/382 (70%), Gaps = 4/382 (1%) Strand=Plus/Minus Query 4279 ACGGCTGTAAATCACATGGCCGCTACTGCGCGTCAGGAGT-TCGCACAGGGC-AACAGCG 4336 || ||||| ||||| |||| || || ||||| || || || | ||| || ||||||| Sbjct 11057 ACAGCTGTGAATCATCTGGCTGCCACAGCGCG-CAACAGCGTCAC-CAGTGCCAACAGCG 11000 Query 4337 ATATCGTAAAGGCCAAACAGTGGTCCTCAACGCTGGACACTCATACCAGCCAGTGGTGCA 4396 ||||||| || | |||||||||| || |||||||||| | | |||||||| |||| Sbjct 10999 ATATCGTGAAAGGCAAACAGTGGCTGTCTACGCTGGACAATAAAACCAGCCACGACTGCA 10940 Query 4397 TTATCCGCGACCGAAAGCTTTACACGCTCGACGGCAAGCCGCTGGGGCATGAAATTCCGT 4456 |||| || |||| || |||||| || || ||| ||| | |||||| | | || | Sbjct 10939 TTATTCGTGACCTGCTGCGTTACACCCTGGATAACAAACCGGTCGGGCATAAGGTGCCTT 10880 Query 4457 ATCTGCGCGGACCCGGCAAAATTCATTTCTGCTGTCGCTCCGGTGAAATCCTGATTACCA 4516 | |||| |||||||| || ||||||||||||||||| || ||||| |||||| || Sbjct 10879 ACCTGCAGGGACCCGGGAAGATTCATTTCTGCTGTCGTTCTACTGAAACTCTGATTCTCA 10820 Query 4517 AATCGTGGGAAGAGATGCAGATAGCCTCTGGCGAGCTGAGCATCGCCACGCGCGCCTCAA 4576 | || ||| || | ||| | || ||| || | | ||| || ||| | Sbjct 10819 AGTCTTGGCGCGAACTCGGGATTGATATTGATGAGATGGACGAGGGCACTCGTGCCAGCA 10760 Query 4577 TGGACGGACAGGTGCCATCGCATACCAGCTATGCCGAATGGCTCGTCAGGCAACCGTACG 4636 |||| || ||||||||| | | |||| ||| |||||||||| | || || Sbjct 10759 TGGATGGCCAGGTGCCAGCTAAAACCACGTATCTGGAATGGCTCGAGCGTCAGCCAGCTC 10700 Query 4637 CACGGCAGGAGCAGGTGCTGGG 4658 ||||||||| ||||| ||||| Sbjct 10699 AACGGCAGGATCAGGTTCTGGG 10678 >seq1547 Length=4346 Score = 111 bits (122), Expect = 5e-20 Identities = 172/240 (72%), Gaps = 8/240 (3%) Strand=Plus/Minus Query 19949 CGAACCTATAGCGGCACATGGGACGGGA-CATTTAAGTGGGGCTGGACGAATAACCCAGC 20007 ||||| || |||||||| ||| ||||| |||||||||||| |||||| ||||||| || Sbjct 4056 CGAACGTACAGCGGCACCTGG-ACGGGCGCATTTAAGTGGGCATGGACGGATAACCCTGC 3998 Query 20008 GTGGATCTGGTTCGAT---GTGCTCACTGAGCCGCGTTTCGGACTTGGCCGCCGTGTGAC 20064 |||||| | | |||| ||| ||||||| |||| ||||| ||||| || | || Sbjct 3997 GTGGATATTTTACGATCTGGTGGTCACTGA-CCGC--TTCGGCCTTGGTAATCGGCTAAC 3941 Query 20065 GCCAGAAATGCTCGATAAATGGGAGCTTTATCGCATAGCGCAGCGCTGTGATCAGCTTGT 20124 | ||| | |||| |||||| ||||||| | || || |||||||| || Sbjct 3940 GGCAGCCAACATCGACAAATGGACTCTTTATCAGGTCGCTCAATATTGTGATCAATCGGT 3881 Query 20125 ACCAGATGGAAAAGGCGGTAGCGGTACAGAGCCGCGCTTCATGTTTGACGTGTACATTCA 20184 ||| ||||| || ||||| ||||| || || || || | || | |||| |||||||| Sbjct 3880 ACCGGATGGTAAGGGCGGCAGCGGAACTGAACCACGTTACACCTGCAACGTATACATTCA 3821 Score = 91.5 bits (100), Expect = 5e-14 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 21533 CAGATGGGCCTTAAGGCCGGTCAGGAATTCTGGTACCGCGCACAGCTGGTTGACCGAACC 21592 ||| | |||||||| || || |||||||||||||||||||||||||| || ||| |||| Sbjct 2511 CAGCTCGGCCTTAAAGCAGGGCAGGAATTCTGGTACCGCGCACAGCTTGTCGACAGAACG 2452 Query 21593 GGTAACGAATCAGGATACACAGAATGGGTTCGTGG 21627 |||||||| || || || || || ||| | || || Sbjct 2451 GGTAACGAGTCCGGGTATACCGACTGGATCCGGGG 2417 >seq952 Length=33737 Score = 87.8 bits (96), Expect = 6e-13 Identities = 48/48 (100%), Gaps = 0/48 (0%) Strand=Plus/Minus Query 25962 CTTCTAAGCCGTAGGTCGTAGGTTCGAATCCTACAGGGCGTGCCATTT 26009 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12111 CTTCTAAGCCGTAGGTCGTAGGTTCGAATCCTACAGGGCGTGCCATTT 12064 >seq955 Length=33606 Score = 86.0 bits (94), Expect = 2e-12 Identities = 47/47 (100%), Gaps = 0/47 (0%) Strand=Plus/Minus Query 25962 CTTCTAAGCCGTAGGTCGTAGGTTCGAATCCTACAGGGCGTGCCATT 26008 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1472 CTTCTAAGCCGTAGGTCGTAGGTTCGAATCCTACAGGGCGTGCCATT 1426 >seq960 Length=33163 Score = 84.2 bits (92), Expect = 7e-12 Identities = 177/259 (68%), Gaps = 10/259 (4%) Strand=Plus/Plus Query 19907 GGGCGTATTATCCGCATCCCTTCGAATTACGATCCGATAGCCCGAACCTATAGCGGCACA 19966 ||||| || |||||| | || || ||||||||| |||| ||||| |||||| Sbjct 13031 GGGCGGATCATCCGCGTGCCAAGCAACTACGATCCGGCCACCCGGACCTACAGCGGCGTG 13090 Query 19967 TGGGACGGGACATTTAAGTGGGGCTGGACGAATAACCCAGCGTGGATCTGGTTCGATGTG 20026 |||||||| || || |||| || |||||| | ||||| || ||||||| | ||| || Sbjct 13091 TGGGACGGCACCTTCAAGTCGGCCTGGACCGACAACCCGGCCTGGATCTACTACGACCTG 13150 Query 20027 CTCACTGAGCC-GCGTTTCGGACTTGGCCGCCGTGTGA-CGCCAGAAATGCTCGATAAAT 20084 || ||| || ||||| || || || | || | | |||| | | | || || | Sbjct 13151 CTG-CTGCACCAGCGTTATGGCCTCGGGCACCTGCTCAACGCCGCCCAGG-TGGACAAGT 13208 Query 20085 GGGAGCTTTATCGCATAGCGCAGCGCTGTGATCAGCTTGTACCAGATGGAAAAGGCGGTA 20144 ||||||| || ||||| | ||| ||| || |||| || | ||||| || ||||| | Sbjct 13209 GGGAGCTGTACCGCATCGGCCAGTACTGCGACCAGCCGGTGTCCGATGGCAAGGGCGGCA 13268 Query 20145 GCGGTACAGAGCCGCGCTT 20163 || |||||||||| Sbjct 13269 CCG------AGCCGCGCTT 13281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158518222895464