Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_016765.1 Length=54024 Score E Sequences producing significant alignments: (Bits) Value seq960 118 4e-22 >seq960 Length=33163 Score = 118 bits (130), Expect = 4e-22 Identities = 281/419 (67%), Gaps = 17/419 (4%) Strand=Plus/Plus Query 10206 TGGAGGTCGAGTGCGCTACCGCGTTCAACCCCGGTGGCAACCCTGCCGACCAGATCGAAA 10265 |||| |||||| || || | ||| | ||||| ||| |||||||| |||||||| Sbjct 2332 TGGAAGTCGAGCACGTCACTTCCTTCGAGCCCGGCGGCGCGCCTGCCGAGCAGATCGAGG 2391 Query 10266 CCACATGCCTTAGCGAAACTGTTCGGCGCTACCTGCGCGGCCTGCGCACGCCGGG-ACAG 10324 ||| ||| || | || ||||| | ||||||||||| || || || | Sbjct 2392 ACACCACCCTCGACGCCCAGGAGCGCAGCTACAAGAAAGGCCTGCGCACCCCTGGCACTG 2451 Query 10325 GCGTCGCTGACCCTCAACGCTGACCCGCGCAACAGTTCCCATATCCGCCTCTACCAACTG 10384 | | ||| |||||||| |||||| |||| |||| | ||||| |||| ||| Sbjct 2452 CCAGC-CTGGGGCTCAACGCCGACCCGGCCAACGCCAGCCATGTGCGCCTGCACCAGCTG 2510 Query 10385 TCCGAGTCCGACGACCAGATCGATCAGGACATCGCTTTCGCGGTTGGCTGGTCTGACGGT 10444 ||||| || | | | ||| | || |||| | | || |||||||| ||||| Sbjct 2511 TCCGAAGCCAATGGCGAGACC----AG--CATCAAGTGGGTCGTGGGCTGGTCCGACGGC 2564 Query 10445 ATTGGCGTTGCACCAACCGAGGCACAGGACAGCAACGGTGATTGGGATTTCGTTCTTCCG 10504 | ||| | || || |||| || ||| ||| || ||| | |||| || ||| Sbjct 2565 AAGGGCATCGCGCCGACCGT----CA--ACACCAAGGGCGATA---ACTTCGAGCTGCCG 2615 Query 10505 CCGACGCGCACCTGGTTCGTCTTCCGCGGCTATGTGAGCGACTTCCCGTTCGATTTTGCA 10564 | || |||||||||||| |||| |||||| || |||||||||||| | || || Sbjct 2616 ACCACTCGCACCTGGTTCACCTTCGACGGCTACGTCTCGGACTTCCCGTTCAACTTCGCC 2675 Query 10565 GCCAACGCTGTGGTGACCTCTACCGCAACCATTCAGCGCTCCGGCGGTTCCGCCTGGAT 10623 |||||| ||||| ||| | |||| ||||| |||||| |||| || ||| ||||||| Sbjct 2676 CTCAACGCCGTGGTCACCACCACCGTGACCATCCAGCGCACCGGTGGCTCCACCTGGAT 2734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 172751519666408