Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq65 118 1e-21 >seq65 Length=1244346 Score = 118 bits (130), Expect = 1e-21 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 37439 ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGC 37498 |||| | || ||||| ||||| ||||| ||||||||||| || | ||| || || || Sbjct 630995 ATCTCTGATGTAAGTGTCAATAAGTAATGAGTACATTTCAGAATGTACATTCTCCATGGC 630936 Query 37499 TATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTT 37558 || || || || || || || |||||||||| | ||| || || | | ||||| | Sbjct 630935 GATTTGGAATCCGTAGAAGCATCTAGCTTCAGTCACTTGCACTTCCTGGGAGAACCTTTC 630876 Query 37559 AGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTAT 37618 | | ||| |||||||| ||||||||| ||| |||||||| || | |||| ||| || Sbjct 630875 CACAAGGTTCTCATTAACAATCCCATCAGAAGCAGCAAAGAATGCCAAGACATGTTTGAT 630816 Query 37619 AAAATGTCTTTCA 37631 |||||| |||||| Sbjct 630815 AAAATGCCTTTCA 630803 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/147 (74%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 37195 AACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCttt 37254 ||||| ||||||| ||||||||||| ||||| | ||| ||||| | ||||| | Sbjct 631697 AACCT-CATCTCTGGAGATCAATTCATTGCTGAAGGTCAGTCCGGGCATGAGCCCTCTCT 631639 Query 37255 ttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAA 37314 |||||| ||| || || | ||| ||| ||||| ||||| || || |||||||| || | Sbjct 631638 TTTTAAGCCAGAAGATGGATGCGAAACTGCCAGAGAAGAAGATGCCCTCAACTGCCGCGA 631579 Query 37315 ATGCTACAAGACGTGTACCGAAAGTTG 37341 ||||||| | | | |||||| |||| Sbjct 631578 ATGCTACTATTCTTTCACCGAATGTTG 631552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592303517295760