Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_017981.1 Length=49981 Score E Sequences producing significant alignments: (Bits) Value seq986 403 6e-108 seq813 219 1e-52 >seq986 Length=30461 Score = 403 bits (446), Expect = 6e-108 Identities = 917/1371 (67%), Gaps = 14/1371 (1%) Strand=Plus/Plus Query 17380 TGAGATCCTTGTAGGCCAACCGGGCGGTAAGGGCAAAAACGTTAGCGCCCTTCGCTGCGA 17439 ||| || ||||||| || || ||| ||| || | ||| | ||| || | ||| Sbjct 2726 TGAAATAATTGTAGGTCAGCCTCAGGGTGAGGCAGTAAGCATTAAAGACCTGCGATTCGA 2785 Query 17440 GTTCGATATTACGGCCACGTCCAGCAAGTCGCCAAATCAAGGAACGCTGAAGGTGTACAA 17499 |||||| || || || ||||||| | | || ||| | | || || | ||||| Sbjct 2786 GTTCGACATCACCAAAACAGCCAGCAAAACCGCCAACGAAGCATCACTCAAAATCTACAA 2845 Query 17500 CGCCGCACCTGACACGATAACCATGATGGAGACGGTAAATAACGTCGTCATCATCAAGGC 17559 ||||||||| || || || |||||||||| ||||||||||| |||||||||||||| Sbjct 2846 CGCCGCACCCACAACAATCACTCTGATGGAGACCGTAAATAACGTGGTCATCATCAAGGC 2905 Query 17560 CGGGTACACGGAGGACGTCGGAGCGGTCCAGATCTTTGCCGGTACGGTGTGCCGGTCACT 17619 ||| ||| | || |||| || || ||||| | || || ||||| || Sbjct 2906 CGGCTACCTCAATGATATCGGCGCTATCACCATCTTCACAGGCACCACATGCCGTAGTCT 2965 Query 17620 GACATACCAGGATGGGCCGGACGTCATCACTGAGATGGAGTTGCGCGACAGCGTGATCCC 17679 |||||| |||||||| || ||| ||||||| || |||||||| | ||||| || || || Sbjct 2966 GACATATCAGGATGGTCCTGACATCATCACGGAAATGGAGTTAAGGGACAGTGTCATACC 3025 Query 17680 GCTCAGAGATGCAAAGGTGTCGATCAGCTATCCGCCGAACACCTCAGCGCTCACAGTGCT 17739 | | || || ||| | | || || || || || ||||| | |||||||| Sbjct 3026 TTTACGCGACGCCAAGATTAGCGTTTCCTTCCCTCCAAATACGTCAGCAATGACAGTGCT 3085 Query 17740 GGATGGCGTGGCGAATAACTTTGGCCTGCCAATCCGCAAGAACCTGA---AGATCACCGA 17796 |||||| |||||||| ||||| || ||||||||| |||| | | | || | || Sbjct 3086 GGATGGGGTGGCGAAGAACTTCGGACTGCCAATCAAGAAGAGCATCAGCAAGGTTCAGGA 3145 Query 17797 CAAGCGTTACCCTTCAGGCTTTGCCTTTAATGGCCGCGTGCGCAACGCTATGGATCAGGT 17856 |||| ||| || | ||||| ||| || | || ||| | || ||||| ||| Sbjct 3146 TAAGCAGTACGTCGGCGGATATGCCTATAACGGAAGGGTTCGCGATGCCATGGACAGGGT 3205 Query 17857 TTGTAACTTCCTGGGGCTGGAGTGGAGCGCGCAGGGTAACGAGATCCAGATCATCAAGAA 17916 ||||| | || |||||||||||||| || |||| || ||| || ||||| ||||| || Sbjct 3206 CTGTAATTATCTCGGGCTGGAGTGGAGTGCTCAGGATAGCGAAATACAGATTATCAAAAA 3265 Query 17917 GGGCGGCGTCTATTCAGATATGGCCGTTGACCTGAATGAGAACACGGGGATGATCGGATA 17976 ||| ||||| ||| |||| | ||| || | ||| | |||| || ||||||||||| Sbjct 3266 GGGTGGCGTTTATGCAGACACGGCTGTCGTGCTGTCGAAAGACACTGGCATGATCGGATA 3325 Query 17977 CCCGCGCCGCGAGTCAAAAACGATGACGGAGAAGACGGCGGCAAAAGAGGGGCTGAAATA 18036 || || || || ||||||| ||||| ||||||||||| || || |||| | ||||| Sbjct 3326 TCCCCGTCGTGAAGCAAAAACCATGACCGAGAAGACGGCAGCCAAGCAGGGCATCAAATA 3385 Query 18037 CGGCCAGAAGGGGATCGTCAGGACTACCATCGACGTTGCCGATCCAACCTCAAAACTGAA 18096 ||| ||||| || ||||||||||| | || || | || || || |||| || || Sbjct 3386 CGGTCAGAAAGGCATCGTCAGGACGGTTGTGGATGTCGAAGACCCTACAGCAAAGCTCAA 3445 Query 18097 GGAAAAAACAACTCTTGAGGTGCAAGGATACCGCGTGCGCTCACTGATGAATGCAGCACT 18156 || ||||||||| ||||| || ||||| ||| || || | || | || | Sbjct 3446 AGACCGTGTAACTCTTGAAGTGCAGGGCTACCGGGTGAAGTCCCTCCTCAACCCTGCCAT 3505 Query 18157 TTACCCCGGCGCGTATGTTAAACTGACGTCGCGAGGCATTGAAGGGGCATTCTTTCGTGT 18216 ||| || ||||| |||||| | || | || || || ||||| || | ||||| | || Sbjct 3506 TTATCCAGGCGCTTATGTTCAGCTTAAATCTCGCGGAATTGATGGAGAGTTCTTCAGGGT 3565 Query 18217 GGAAGAAGCGCATTATGTGGGCGACGTGGACGGCGGCGATTTCTACGTTGAGGTTTTATT 18276 |||||||| ||||| || || | |||| || | ||| || | |||| Sbjct 3566 TGAAGAAGCACATTACACCGGAGATACGCACGGGCAGGAATGGAGCGTGGAAGCGCTATT 3625 Query 18277 GAGGTTTGTCTGATGGCAGATAATAGCGACGACGTAACAGCGCTGGAGAATTTCATAAAG 18336 ||||||| ||||||||| ||||| || || | ||| |||||| ||| | | Sbjct 3626 GAGGTTTATCTGATGGCTGATAACAGTGATGTAGTAGAAGCGCT-CAGA----CGGCTTG 3680 Query 18337 TCA--ACAGTTGTTGATTTCGTAAACACCTCCATCGAATGTGAGATCGTTTCGTATGAAA 18394 ||| | | | || |||||||| | | |||| | || ||| | Sbjct 3681 TCAGTTCGGAAATGGACACTGTAAACACGGCACTTCCATGTACCGTGGTGAGTTATTCAG 3740 Query 18395 ACGGGCGAGCGACTGTAAAGCC-GATCAACCAAAAGACTTATGACGACGGCGACAGCAAC 18453 |||| | || |||||||| ||| | | || | || | || ||||| | |||| Sbjct 3741 GCGGGAAGGTAACGGTAAAGCCTGATGGA-GAGAAAATATACGCAGATGGCGATACCAAC 3799 Query 18454 GACTATCCGACGCTCCAGGGGTTGCGGATGCTTTGGCCGCAGTTTGATGGCGGCAAAGCT 18513 | |||||| |||| | || || ||| | ||||||||||||| ||| | || Sbjct 3800 GCCTATCCTGTGCTCAGCGATTTACGCATGGTGTGGCCGCAGTTTGCAAACGGTCAGGCC 3859 Query 18514 GGCGTTAAAGGCCCGGTTAAACCGGGCGATAAGTGCCTTCTTATTGTCTGCCAGCACGCA 18573 || |||||||||| || | | || ||||| |||||| | | ||||||||||| ||| Sbjct 3860 GGATTTAAAGGCCCCGTCCAGGCTGGTGATAAATGCCTTTTGGTGGTCTGCCAGCAGGCA 3919 Query 18574 ATGGACGACAGCGGCGACAACCGCAAATACAGCCTGATTGACAGCTATGTTATTCCTGGT 18633 | || | ||||| ||||| | || | | | || ||| || |||||||||||| Sbjct 3920 ACAGATGGCAGCGACGACACAAGACGATTCGACATCATCGACTCATACGTTATTCCTGGT 3979 Query 18634 GCCGGGTACGACGATTCTATTGCC-GGTAACGACGATATGAGGATCTATTACGGCGAGGC 18692 || || || ||| | | |||| || ||||| || | ||||| |||| ||||| || Sbjct 3980 GCTGGTTATAGTGATGC-AGTGCCTGGCAACGATGACGTAAGGATGTATTTTGGCGATGC 4038 Query 18693 ATTCTTAGCAATCGGTGCCGATAAGAAGATCAAGATCAACGCGCCTGGCGG 18743 ||| | || |||| ||| | ||| || | ||||| ||||| || || Sbjct 4039 CTTCATTGCTATCGACGCCAACGGGAAAATGACTATCAATGCGCCAGGAGG 4089 Score = 86.0 bits (94), Expect = 2e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 20537 TGCCACCCTGGGCTTGGGCGATGATGTTGTGATCCAGAGGATTTACGGCCACGTTTACGA 20596 ||| || || ||| | || ||||| ||| | | ||| | ||||| || || | |||| Sbjct 5942 TGCAACTCTCGGCCTTGGTGATGACGTTATCACCCAACGCATTTATGGTTACATCTACGC 6001 Query 20597 CAACACAACCGGCATTGCAAAAATGACAATCACTGCCAGCACAGACGGAACAACATT 20653 ||| ||||||||||| | ||||||||| ||||| | |||||| |||||||| || || Sbjct 6002 CAATACAACCGGCATCGGAAAAATGACCATCACGGTCAGCACTGACGGAACTACGTT 6058 >seq813 Length=55966 Score = 219 bits (242), Expect = 1e-52 Identities = 247/330 (75%), Gaps = 3/330 (1%) Strand=Plus/Plus Query 25944 GCCGATCATCTGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTCAAC 26003 ||| | |||||||||||| ||||||||||| ||||||| ||| |||||||| |||| | Sbjct 13442 GCCCAGCATCTGCATGGTACCGCCAACGTTTACCACAACTTCGGTGGTGTACTTCTCAGC 13501 Query 26004 GCCGTCCTTTTC---CCACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACC 26060 |||| || || ||| || ||||| |||||| || || || || ||||| ||||| Sbjct 13502 GCCGGACTGATCGGTCCATTTACGGGTGCGCAGTTGGCCTTCGATATAGACCTGAGAACC 13561 Query 26061 TTTCTTCAGGTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCA 26120 ||| ||| ||||| || || | || || | |||||||||||||| ||||| ||||| Sbjct 13562 TTTACGCAGATACTCACCGGCAACTTCTGCCAGTTTGCCAAACAGCACCACGCGGTGCCA 13621 Query 26121 TTCTGTCACTTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCAGCTTTCTGAGGTCGCTAC 26180 ||| ||| |||||| | || |||||| ||||| |||| ||| || || || | Sbjct 13622 TTCAGTCTGCTCTTTCATCTCACCGGTCGCTTTATCACGCCAGGATTCGGAAGTAGCCAG 13681 Query 26181 GGTAATGTTGGCGACTGCGCCGCCATTAGGCATGTAACGGATCTCTGGATCGTTCCCCAG 26240 ||||||||||| |||||||| ||| | |||||||| || | || || || | ||||| Sbjct 13682 CGTAATGTTGGCAACTGCGCCACCACTCGGCATGTAGCGTACTTCCGGGTCCTGGCCCAG 13741 Query 26241 GTTACCGACAAGGATTACTTTATTTACGCC 26270 |||||||| || || || || |||||||| Sbjct 13742 ATTACCGACGAGAATCACCTTGTTTACGCC 13771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159814195285804