Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_017984.1 Length=46387 Score E Sequences producing significant alignments: (Bits) Value seq1230 179 1e-40 >seq1230 Length=13776 Score = 179 bits (198), Expect = 1e-40 Identities = 363/526 (69%), Gaps = 22/526 (4%) Strand=Plus/Plus Query 44226 TTCACAAGTTTCAAATGACTTGGGAGGTTAATGAGGCTAAAAATATTATCGAGCTTCATC 44285 |||| ||||| || ||| |||||| ||||| || ||| || || || || |||| Sbjct 3714 TTCATAAGTTCCAGATGTTTTGGGAAACGAATGAAGCCAAACGGATCATAGAACTGCATC 3773 Query 44286 ACTTGCTTAATGGTGTGGATCCGCAAGAGTCTACTCATACGCCACTTAAAGTCTGGATGA 44345 | ||||| ||||||| ||| | ||| || | |||||||| || ||||||| Sbjct 3774 ATTTGCTGAATGGTGAAGATTGTGATGAGGAAACGTTCTCACCACTTAATGTATGGATGA 3833 Query 44346 AGGCGCATAAAGGTGATTTAGCTTTAGCTTTAAAGACGCAGACTA-TCCCAGAAGAGCAA 44404 |||| |||||||| ||| |||| | || | || | ||||| | ||| || | | ||| Sbjct 3834 AGGCTCATAAAGGAGATCTAGCACTTGCACTTAAATCCCAGACCATTCCGAGCA-AACAA 3892 Query 44405 AGTTTTCATATCGTTAGTCGTATTCATGCGGTTAATGAGAAAACAGGCGAAACGGTTGAC 44464 ||||||||||||||| ||||| | ||||| || | || |||| || |||| || ||| Sbjct 3893 AGTTTTCATATCGTTTGTCGTGTGCATGCTGTACAGGATCAAACTGGTGAAATCGTCGAC 3952 Query 44465 TGTGAGTTTCAACTAGCTACCGATACCGTT-ATG-CATTTGTGGCAGTTCTTG---GGTG 44519 |||||||||||| || | || ||| ||| | || | | |||| ||| ||| Sbjct 3953 ACTGAGTTTCAACTTGC-ATGTCCACAGTTGATGACCTTAATTG-AGTTTTTGTCTGGTC 4010 Query 44520 A---TGTTGAATCTGACATTTATGTCAATGATGGTGGTTTTAAAAAGAAATGGCTCGGCT 44576 | | || || || ||||||| ||||||||||||||||||| |||| |||| Sbjct 4011 AGAGTCACGATGGGGATATCTATGTCATGGATGGTGGTTTTAAAAAGAGATGGGAGGGCT 4070 Query 44577 TTAATCATGAGCT--TGAAGCTTATTTGAAAGAAGTGGGTAACGGTGAG---TTTGTGGT 44631 || || | || | ||||| |||||||| || || || | | || | | | Sbjct 4071 TTGATGAGGAATTAGTGAAG--TATTTGAATGATGTAGG---AGATCAGACCTATCACAT 4125 Query 44632 TAAGACTAATCATTGTTGCTTAACATGCTTTTCTACATTCAAAAGCTTTAGACATGAAAT 44691 ||||| | || || || | ||||||||||| ||||| ||||| ||| ||||| | Sbjct 4126 CAAGACCATACACTGCTGTCTCACATGCTTTTCGACATTTAAAAGTTTTCAGGATGAACT 4185 Query 44692 GGAATTTAAATCAATTAAGTTAATGAATCCTGAATTTGGATTAGGA 44737 || |||||| | | ||| |||||||||| |||| |||||| ||| Sbjct 4186 AGAGTTTAAAACGCTCAAGCTAATGAATCCAGAATATGGATTGGGA 4231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148313640295972