Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_017985.1 Length=40128 Score E Sequences producing significant alignments: (Bits) Value seq986 857 0.0 seq997 230 6e-56 seq1102 95.1 3e-15 >seq986 Length=30461 Score = 857 bits (950), Expect = 0.0 Identities = 988/1330 (74%), Gaps = 0/1330 (0%) Strand=Plus/Plus Query 1467 TTACGCTTTAATATGTATTTAGGCCGCTGTTTGGTTTCTATGTAAATTCTACCAATATAT 1526 |||| |||||| | ||| |||||| ||| |||| || ||||| || ||||| || Sbjct 11744 TTACCCTTTAACAGGTAGCGAGGCCGTCCCTTGCTTTCGATATAAATCCTTCCAATGTAC 11803 Query 1527 TCTCCAAGAATACCTATTCCTATCAATTGAACGCCACCCAGGAAAAGAACAGAAACAAGA 1586 ||||| || | ||| || || || | ||| || ||||| |||||||| | || ||||| Sbjct 11804 TCTCCGAGCACACCAATGCCGATAAGTTGCACACCACCAAGGAAAAGGATGGAGACAAGT 11863 Query 1587 AGAGACGGGTAGCCAGGAACATTATTTCCAAATATTAATTTATCAATAATCATCCATGCA 1646 | ||||| |||||| | ||| ||| ||||| | | || | |||||||||||| Sbjct 11864 AATGACGGATAGCCACGCACAGCATTGCCAAAAGCCAGAGTGTCTACAATCATCCATGCG 11923 Query 1647 CCGTAAAGGAATGACATACCTGCAATAAACAATCCAATGTAAGTCCATATGCGGAGCGGA 1706 || || || |||| | |||||||| || | || || || ||||| ||||| || || Sbjct 11924 CCATAGAGAAATGCGAGACCTGCAACAACAAGCCCGATATAGGTCCACATGCGCAGAGGG 11983 Query 1707 AATGTTGAGAAAGAAGTTATTCCTTCCAGCGCCAGATTCCATAATTTCCAGCCATTGAAT 1766 || || |||||| || || || || || || || |||||||| ||||| ||||| ||| Sbjct 11984 AAGGTAGAGAAACTGGTGATACCCTCAAGAGCAAGGTTCCATAACTTCCAACCATTAAAT 12043 Query 1767 TTTGAATCGCCGGCAACACGTTCGGCACGGGCATATTTAACAACATCCGTTTTTCCGCCA 1826 |||| | ||| ||||| ||||| || |||||||||| |||||||||||| || ||| Sbjct 12044 TTTGTACTGCCTGCAACGCGTTCAGCGCGGGCATATTCAACAACATCCGTGCGACCACCA 12103 Query 1827 ACCCAACTGAGCACACCCTTCATAAACAAGTTGCGTTCTGGCATTTGTTTGATGTTCTCG 1886 ||||| || || || |||||||| || | ||| | |||||||| | |||||||| ||| Sbjct 12104 ACCCAGCTCAGAACTCCCTTCATGAAGAGGTTTCTCTCTGGCATGAGCTTGATGTTTTCG 12163 Query 1887 ACAACCGCACGGCTCATTAACCGAAAGTCGCCAACATTTTCTTCGATTTTTGGATTGCTG 1946 || ||| ||||| ||| | || || || || |||||||| ||||| | || || ||| Sbjct 12164 ACCACCTCACGGGACATCAGACGGAAATCACCGACATTTTCCTCGATCTGCGGGTTACTG 12223 Query 1947 ATTTTATTGTGCAGCTTATAAAACCACTCAGCTGTCTTACGCTTCAACCTCCCATCAGTT 2006 ||||| ||||||| |||||| |||||||| || | ||||| |||| | | |||||| Sbjct 12224 ATTTTGTTGTGCAACTTATAGAACCACTCGGCAGATTTACGTTTCAGACGACTATCAGTG 12283 Query 2007 GAGCGGTCTGAGCGCTTAGCCAGCACCATATCCGCGCCAGCCTGCCACTTCTCAATGAGA 2066 |||||||| |||||||| ||||| ||||| || || || |||||||| ||||| || ||| Sbjct 12284 GAGCGGTCAGAGCGCTTGGCCAGTACCATGTCGGCCCCGGCCTGCCATTTCTCTATCAGA 12343 Query 2067 TGGGGGATAACTTCTATCGGATCCTGTAAATCGACATCAATAGGAATGACCGCATCCCCG 2126 || || || || || || || ||||| || || || ||||| || || | || || || Sbjct 12344 TGCGGAATGACCTCAATTGGGTCCTGCAAGTCTACGTCAATCGGGATAATTGCTTCACCT 12403 Query 2127 GTTGCATGGTCGAGACCCGCGAAAAGAGCAGGTTCTTTACCGAAGTTTCGCGTAAACGAA 2186 || || ||||| || || ||||| | |||||| ||||| || ||||| || || || ||| Sbjct 12404 GTAGCGTGGTCTAGGCCGGCGAATAAAGCAGGCTCTTTTCCAAAGTTGCGGGTGAAGGAA 12463 Query 2187 AGCGGAATAACGAGCGGATCAGATGCAGCTATTTTGTTAATTATTGATTCAGTCGCATCT 2246 || |||| || |||||||| | ||| | ||| || |||||||| ||||||||| Sbjct 12464 AGAGGAACCACAAGCGGATCTGCAATAGCAAGCGCGTTTATAATTGATTCGGTCGCATCT 12523 Query 2247 TTGCTTCCGTCGTTGATGAAAACAATCTCAACTTCATACGGTTTTAACTCTTCAAACTCG 2306 ||||| ||||| |||||||| || ||||||||||| | | | |||||| |||||||||| Sbjct 12524 TTGCTACCGTCATTGATGAAGACTATCTCAACTTCCTGCTGCTTTAACCCTTCAAACTCC 12583 Query 2307 CGAACCGTTTTATAGAAAATAGGTATCGTGGCTTCTTCATTGAAGACCGGAACGACTAAC 2366 || || | ||| ||||| || || || | | |||||||| || ||||||||||| | Sbjct 12584 CGCACGGCTTTGTAGAAGATTGGAATTGCTTCCTCTTCATTAAACACCGGAACGACCAGA 12643 Query 2367 GAGATTTTCATTTCGCATCCCTAAAGACAATGAACTTTGAATAAATGAATCCGCATATCA 2426 || |||||||||||||||||||||||||||||||||||||||| ||||| ||||| | || Sbjct 12644 GAAATTTTCATTTCGCATCCCTAAAGACAATGAACTTTGAATAGATGAAGCCGCACACCA 12703 Query 2427 GGCTGATAGCTGAAAAGGTGACAAGAGTAAGGAGTGGCGGCAGGGAACATTTGTCAGCCA 2486 | ||||| || || || || | |||| | || | || |||||||||| Sbjct 12704 GACTGATGGCGGAGAAAACGATTAACGTAATAATCGGGGCAAGCCCTGATTTGTCAGCAC 12763 Query 2487 TCCAGCCAACAACGGCGCTCAGTGTTCCCATAAATCCCACGTACATCATGTAGCGAAGCG 2546 ||| ||||| |||||||||| || |||||||| || || |||| ||||||||| | | Sbjct 12764 ACCAACCAACGGCGGCGCTCAGCGTACCCATAAACCCTACATACAGCATGTAGCGCATGG 12823 Query 2547 TGGTGGTGCTGGCGTTAAAGGTGAAGCGCGCATTGGCATAGAAGCTGAACGATACGGCGA 2606 | || || | ||||||||||| | || || || | ||||| || || || || | Sbjct 12824 TCGTTGTAGAAGACTTAAAGGTGAACCTGGCGTTTGCGAAAAAGCTAAATGACACCGCAA 12883 Query 2607 TAACAAAACCGGAAAAGTTCGCCAGCGCCTGATGCGTATGCATCCCATACACACAAAAAG 2666 ||||| |||| ||||| ||||| || || || || | | || | | ||| | Sbjct 12884 CTACAAATCCGGCGAAGTTAGCCAGAGCTTGCCCTGTGTGGAAGACGTAAATAGAAATGG 12943 Query 2667 CAAATACGCCCCAATGAATAAGCGTGTTAAGAACACCGATCGATGTGTACTTAGCGAATA 2726 | || || |||| ||||| |||||||| | |||||| || ||||||||| | ||||||| Sbjct 12944 CGAACACAACCCAGTGAATGAGCGTGTTGATAACACCTATTGATGTGTACCTGGCGAATA 13003 Query 2727 ACTTCAACATTATGAAAATCAGCGGATTCGGAAAGGTCTGGAGTGTAGCACTACAAATTG 2786 |||| |||||||| ||||||| | ||||||||||||||| ||||||||| ||| || Sbjct 13004 ACTTTAACATTATAGAAATCAGTGAATTCGGAAAGGTCTGAAGTGTAGCATCACACATGC 13063 Query 2787 CTTTGATCGA 2796 |||||||| Sbjct 13064 ACTTGATCGA 13073 >seq997 Length=29618 Score = 230 bits (254), Expect = 6e-56 Identities = 259/343 (76%), Gaps = 8/343 (2%) Strand=Plus/Minus Query 21157 AAGGGCGCATGTGACCAGCTACGTCGCTGGACATACGCTGGCGGTAAGCAATGGAAAGGG 21216 || |||||||| || | ||| || |||||||| | ||||| || || || ||||||||| Sbjct 18364 AAAGGCGCATGCGATCTGCTGCGGCGCTGGACTCATGCTGGAGGCAAACAGTGGAAAGGG 18305 Query 21217 CTGA-TGACTCGCCGTGAGATTGAGCGTGAAGTCTGTTTGTGGGGGCAGCAATGAGCAGA 21275 ||| | || ||||| |||| |||||| ||| |||| |||||| || ||||||| || Sbjct 18304 -TGAGTAACGCGCCGGGAGAATGAGCGCGAATTCTGCATGTGGGACCATAAATGAGCTGA 18246 Query 21276 GTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTT 21335 |||||||||| |||| |||| | ||||||||| | | |||| || | ||||| || Sbjct 18245 TTAACCGCGATCATCTGCGCTGTCGTTATCTGCCTGCTGGTCTTTATGGCTTGGGCGATT 18186 Query 21336 AATCATTACCGTGATAATGCAATCGCCTACAAAGAGCAGCGCGATAAAAAAGTCAGTG-- 21393 || || || || || || || ||| |||||||||||||||||||| |||| || || Sbjct 18185 AACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGAT---AAAGCCACTGAG 18129 Query 21394 -AACTGAAGCAGGCGACCGCCACCATTACTGACATGCAGCAGCGCCAGCGTGATGCTGAT 21452 |||| | ||||| | ||||||||| | ||||||||| |||||||||||||| | | Sbjct 18128 AAACTCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGATGCCGCT 18069 Query 21453 GCACTCGATGCTAAATACACGAAGGAGTTAGCTGATGCGAAAG 21495 || || ||||| |||||||| || ||||||||||||| Sbjct 18068 GCGCTGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAG 18026 >seq1102 Length=22075 Score = 95.1 bits (104), Expect = 3e-15 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 3025 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAATCAAATAC 3084 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 2274 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATCTAAATCAATAAG 2215 Query 3085 TTACGTA 3091 ||| ||| Sbjct 2214 TTATGTA 2208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128285266984520