Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_018275.1 Length=39783 Score E Sequences producing significant alignments: (Bits) Value seq997 156 1e-33 >seq997 Length=29618 Score = 156 bits (172), Expect = 1e-33 Identities = 313/469 (67%), Gaps = 24/469 (5%) Strand=Plus/Minus Query 37872 ATGAGTCGGTTAACCGCGATTATCTCCGCTCTGATTATCTGCATCATCGTCTGTCTGTCA 37931 ||||| | ||||||||||| |||| |||| | |||||||| | | |||| | || | Sbjct 18254 ATGAGCTGATTAACCGCGATCATCTGCGCTGTCGTTATCTGCCTGCTGGTCTTTATGGCT 18195 Query 37932 TGGGCTGTTAATCATTACCGTGATAACGCCATCGCCTACAAAGAGCAGCGCGATAAAGCC 37991 ||||| |||| || || || || ||||||||| |||||||||||||||||||||||||| Sbjct 18194 TGGGCGATTAACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGATAAAGCC 18135 Query 37992 AC---------------------ATCCACAATCGCTGACATGCAGAAGCGTCAACGTGAC 38030 || |||| ||| |||||||||| || || ||||| Sbjct 18134 ACTGAGAAACTCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGAT 18075 Query 38031 GTAGCAAAACTCGACGCCAGATATACAAAGGAGCTTGCTGATGCTAACGCGACTATCGAA 38090 | || || || |||| ||| || || | |||||||| || | | || || Sbjct 18074 GCCGCTGCGCTGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAGATATCATTGAG 18015 Query 38091 AGTCTCCGTGCTGATGTTTCTGCTGGTCGTAAGCGCCTGCAAGTCGCCGCCACCTGT--- 38147 |||| | | ||||| |||||| |||||||| ||||| || ||| | |||| Sbjct 18014 CGTCTGCATAGCGATGTCATTGCTGGCCGTAAGCGGCTGCAGCTCAACGCAAACTGTCCC 17955 Query 38148 GCAAAGTCAACGACCGGAGCCAGCAGCATGGGCGATGGAGAAAGCCCAAGACTTACAGCA 38207 || || | ||||||| || || |||||||||||| |||| |||||||| | Sbjct 17954 GCGAACGGAGCGACCGGCACCGGCGGCATGGGCGATGCTTCCGGCCCCAGACTTACTGAC 17895 Query 38208 GATGCTGAACTCAATTATTACCGTCTCCGAAGTGGAATCGACAGGATAACCGCGCAGGTT 38267 ||||||| |||||| | ||| ||| |||||| || | || |||||| Sbjct 17894 TCCGCTGAACGGGATTATTTCATCCTCAGAAAGCGAATCGTCACAGTGACGAAGCAGGTC 17835 Query 38268 AACTACCTGCAGGAGTACATCAGGACGCAATGCCTGAAATAAttttttt 38316 ||| |||||| | ||||| || || || ||| | |||||| ||||| Sbjct 17834 GGCTATCTGCAGAACTACATAAGCACTCAGTGCTTAAAATAAAGTTTTT 17786 Score = 89.7 bits (98), Expect = 1e-13 Identities = 96/123 (78%), Gaps = 3/123 (2%) Strand=Plus/Minus Query 37670 AAGGGCGCATGTGATCAGCTACGGCGCTGGACATACGCTGGCGGTAAGCAATGGAAAGGG 37729 || |||||||| |||| ||| ||||||||||| | ||||| || || || ||||||||| Sbjct 18364 AAAGGCGCATGCGATCTGCTGCGGCGCTGGACTCATGCTGGAGGCAAACAGTGGAAAGGG 18305 Query 37730 CTGA-TGACCCGTCGTGAGATTGAGCGTGAAGTCTGTTTGTGGGGGCAACAATGAGCATG 37788 ||| | || || || |||| |||||| ||| |||| |||||| || ||||||| || Sbjct 18304 -TGAGTAACGCGCCGGGAGAATGAGCGCGAATTCTGCATGTGGGACCATAAATGAGC-TG 18247 Query 37789 ATT 37791 ||| Sbjct 18246 ATT 18244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127181290503860