Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_018279.1 Length=49116 Score E Sequences producing significant alignments: (Bits) Value seq1620 495 1e-135 seq997 230 7e-56 seq1047 145 2e-30 seq732 141 3e-29 seq1547 93.3 1e-14 >seq1620 Length=3322 Score = 495 bits (548), Expect = 1e-135 Identities = 432/537 (80%), Gaps = 0/537 (0%) Strand=Plus/Plus Query 25386 TTTGCGCCGGCAAAGCAGGAAATCGTCTGCAGCCGGTCATTCGGAGAACGCGTTACCGAA 25445 ||||| || || |||||||||||||||||||||||||| || || |||||||| || ||| Sbjct 1 TTTGCACCAGCTAAGCAGGAAATCGTCTGCAGCCGGTCTTTTGGTGAACGCGTCACAGAA 60 Query 25446 TACGAACAGATGCGCCAGGCTATCTGCAGTTATGCTGCCCGTGGTGCTGAAAAACTACGT 25505 || || |||||||| ||||| |||||||| ||||| ||||||||||||||||| || ||| Sbjct 61 TATGAGCAGATGCGTCAGGCCATCTGCAGCTATGCGGCCCGTGGTGCTGAAAAGCTTCGT 120 Query 25506 GGTGAGCACCAGTATTGCCGTTTTATCTCGGCGTTCGTCAAGACGTCACCGTTCGCGCTT 25565 |||||||||||||||||||| |||||||| |||||||| || || || || || |||||| Sbjct 121 GGTGAGCACCAGTATTGCCGGTTTATCTCTGCGTTCGTGAAAACCTCTCCCTTTGCGCTT 180 Query 25566 AACGAGCCGTATTACGGCAATTGCGCGTCAGTGAAGCTTCTCACACCCACGCATGATTCC 25625 |||||||||||||| || || | ||||| | |||||||| || ||||| || ||||| Sbjct 181 AACGAGCCGTATTATGGTAACAGTGCGTCCATCAAGCTTCTTACCCCCACTCAGGATTCA 240 Query 25626 CGCGACATCATCAACGCTGTTGTTAAGTGCCTGGACAAAATCTGGCAGGATGGGCACCGC 25685 ||||||||||| ||||| || ||||||||||||||||||||| | || || ||||| Sbjct 241 CGCGACATCATTAACGCCACGGTAAAGTGCCTGGACAAAATCTGGAAAGACGGACACCGT 300 Query 25686 TACCAAAAGGCTGGCATTATGCTCGGGGATTTCTTTAGCCAGGGTGTCGCACAGCTTAAC 25745 ||||| || || ||||||||||| || || ||||||||||| ||||| || ||||| ||| Sbjct 301 TACCAGAAAGCCGGCATTATGCTGGGTGACTTCTTTAGCCATGGTGTGGCCCAGCTCAAC 360 Query 25746 CTGTTTGATGACAATGCCCCACGTGCTGGCAGCGAGAAGCTGATGGAGGTGCTGGATCAA 25805 |||| || || || || || || ||||| ||||| | | ||||| | || |||||| | Sbjct 361 TTGTTCGACGAGAACGCGCCGCGCGCTGGTAGCGATAGGTTGATGAAAGTTCTGGATTAT 420 Query 25806 CTCAACGCCAAAGGCGGGAAGGGGACGCTGTACTTCGCCGGGGAGGGCATTCAGCAACAG 25865 || ||||| |||| || ||||| || || || || |||||| ||||||| ||||| || Sbjct 421 CTGAACGCGAAAGATGGAAAGGGAACACTTTATTTTGCCGGGCAGGGCATACAGCAGCAA 480 Query 25866 TGGGCGATGAAGAGAGAAATGCTTTCGCCTCGGTACACTACTAGGTACTCTGATCTA 25922 ||| |||||| | || ||| | || || || || ||||| ||||| || || ||| Sbjct 481 TGGCAGATGAAACGGGATATGTTATCTCCACGATATACTACGAGGTATTCAGACCTA 537 >seq997 Length=29618 Score = 230 bits (254), Expect = 7e-56 Identities = 259/343 (76%), Gaps = 8/343 (2%) Strand=Plus/Minus Query 46644 AAAGGCGCATGTGACCAGCTACGTCGCTGGACATACGCTGGCGGTAAGCAATGGAAAGGG 46703 ||||||||||| || | ||| || |||||||| | ||||| || || || ||||||||| Sbjct 18364 AAAGGCGCATGCGATCTGCTGCGGCGCTGGACTCATGCTGGAGGCAAACAGTGGAAAGGG 18305 Query 46704 CTGA-TGACTCGCCGTGAGATTGAGTGTGAAGTCTGTTTGTGGGGGCAGCAATGAGCAGA 46762 ||| | || ||||| |||| |||| | ||| |||| |||||| || ||||||| || Sbjct 18304 -TGAGTAACGCGCCGGGAGAATGAGCGCGAATTCTGCATGTGGGACCATAAATGAGCTGA 18246 Query 46763 GTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTT 46822 |||||||||| |||| |||| | ||||||||| | | |||| || | ||||| || Sbjct 18245 TTAACCGCGATCATCTGCGCTGTCGTTATCTGCCTGCTGGTCTTTATGGCTTGGGCGATT 18186 Query 46823 AATCATTACCGTGATAATGCAATCGCCTACAAAGAGCAGCGCGATAAAAAAGTCAGTG-- 46880 || || || || || || || ||| |||||||||||||||||||| |||| || || Sbjct 18185 AACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGAT---AAAGCCACTGAG 18129 Query 46881 -AACTGAAGCAGGCGACCGCCACCATTACTGACATGCAGCAGCGCCAGCGTGATGCTGAT 46939 |||| | ||||| | ||||||||| | ||||||||| |||||||||||||| | | Sbjct 18128 AAACTCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGATGCCGCT 18069 Query 46940 GCACTCGATGCTAAATACACGAAGGAGTTAGCTGATGCGAAAG 46982 || || ||||| |||||||| || ||||||||||||| Sbjct 18068 GCGCTGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAG 18026 >seq1047 Length=26254 Score = 145 bits (160), Expect = 2e-30 Identities = 409/619 (66%), Gaps = 12/619 (2%) Strand=Plus/Minus Query 25190 GCTGCTGGCACTGATACCCGTAGAGGATGTGTGGGGTGTCGGTAGGCGTATCAGCAAG-A 25248 |||||| ||||| || || || || | ||||| || || | ||||| ||| | | Sbjct 18539 GCTGCTTTCACTGCAGCCGGTCGAAGAGATCTGGGGCGTGGGAAACCGTATT-GCACGCA 18481 Query 25249 AGCTCAATGCCATGGGAATCAAAACGGCTCTGGATCTCTCAGAGCAAAGCACCTGGA--T 25306 ||||||||| |||| |||||||| || || ||||| | | | | ||| || | Sbjct 18480 AGCTCAATGTTCTGGGCATCAAAACCGCGCTCGATCTGGCCCTG--ACGAACCCGGCCTT 18423 Query 25307 TATCCGCAAGCACTTTAATGTGGTACTGGAACGAACGGTCCGGGAGCTGCGTGGCGAACC 25366 ||||||||| | || || || || || ||||| || || || || || ||| Sbjct 18422 TATCCGCAAAAATTTCTCCGTCGTTCTCGAGCGAACAGTACGCGAATTGAACGGGGAAAG 18363 Query 25367 ATGTCTGGATCTGGAGGAGTTTGCGCCGGCAAAGCAGGAAATCGTCTGCAGCCGGTCATT 25426 || || || || || |||| |||||||| | |||||||||||||| || Sbjct 18362 CTGCATGTCGCTTGAAGAAGCCCCGCCAACAAAGCAGCAGATCGTCTGCAGCCGTAGCTT 18303 Query 25427 CGGAGAACGCGTTACCGAATACGAACAGATGCGCCAGGCTATCTG-CAGTTATGCTGCCC 25485 ||| || || || |||||||| | |||| |||||| |||| |||| | || | | Sbjct 18302 CGGCGAGAAGGTCACTGAATACGATTCGTTGCGGCAGGCTGTCTGTCAGT-ACGCAGAGC 18244 Query 25486 GTGGTGCTGAAAAACTACGTGGTGAGCACCAGTATTGCCGTTTTATCTCGGCGTTCGTCA 25545 | | | |||||||| ||| |||| |||||||||||| ||| || | ||| | | Sbjct 18243 GGGCCTCAGAAAAACTGCGTAAAGAGCGCCAGTATTGCCGGCATATTTCCGTTTTCATTA 18184 Query 25546 AGACGTCACCGTTCGCGCTTAACGAGCCGTATTACGGCAATTGCGCGTCAGTGAAGCTTC 25605 | ||||| || || || |||| ||||| || |||||||| || | | ||| || | Sbjct 18183 AAACGTCCCCTTTTGCCGTTAAAGAGCCTTACTACGGCAACGTGGCCACGGAGAAACTGC 18124 Query 25606 TCACACCCACGCATGATTCCCGCGACATCATCAACGCTGTTGTTAAGTGCCTGGACAAAA 25665 | || ||||| || || |||| ||||| || || | | | | ||||| | Sbjct 18123 TTACCCCCACTCAGGACACCCGGGACATTATTGCGGCCGCTACAACGGCTCTGGAGCGTA 18064 Query 25666 TCTGGCAGGATGGGCACCGCTA--CCAAAAGGCTGGCATTATGCTCGGGGATTTCTTTAG 25723 ||||| ||||||||||||| || ||||| || || | ||||| || ||| | Sbjct 18063 TCTGGAAGGATGGGCACCGGTATGCCAAA--GCCGGTGTGATGCTGAATGACTTCACCTG 18006 Query 25724 CCAGGGTGTCGCACAGCTTAACCTGTTTGATGACAATGCCCCACGTGCTGGCAGCGAGAA 25783 | || || | ||||| | ||||| || || | | |||||| || ||||| | Sbjct 18005 CTCCGGCGTTTCGCAGCTGCAGCTGTTCGACGAACGTCCGCCACGTCCTCACAGCGCTGA 17946 Query 25784 GCTGATGGAGGTGCTGGAT 25802 ||||||| |||| || ||| Sbjct 17945 GCTGATGAAGGTTCTTGAT 17927 >seq732 Length=81989 Score = 141 bits (156), Expect = 3e-29 Identities = 362/541 (67%), Gaps = 10/541 (2%) Strand=Plus/Plus Query 25221 TGGGGTGTCGGTAGGCGTATCAGCAAGAAGCTCAATGCCATGGGAATCAAAACGGCTCTG 25280 ||||| || ||| | | ||| || ||||| ||| | ||||| |||| ||||| ||| Sbjct 9705 TGGGGAGTAGGTCGCAGGATCTCAAAAAAGCTTAATACGATGGGCATCACTACGGCACTG 9764 Query 25281 GATCTCTCA-GAGCAAAGCACCTGGATT-ATCCGCAAGCACTTTAATGTGGTACTGGAAC 25338 | || | | || || | ||| ||| ||| | || | || || || || ||||| Sbjct 9765 CAGCTGGCGCGCGCGAACC--CTGTATTTATCAGGAAAAATTTCAACGTTGTGCTGGAGA 9822 Query 25339 GAACGGTCCGGGAGCTGCGTGGCGAACCATGTCTGGATCTGGAGGAGTTTGCGCCGGCAA 25398 |||| |||||||| || || ||| ||| | || || || | ||| | | Sbjct 9823 GAACCGTCCGGGAACTCAACGGAGAAAGCTGTATTTCGCTTGAAGAAGCGCCTCCGCCGA 9882 Query 25399 AGCAGGAAATCGTCTGCAGCCGGTCATTCGGAGAACGCGTTACCGAATACGAACAGATGC 25458 | ||| | || |||||||| ||||| || || || || || || || ||| |||| Sbjct 9883 AACAGCAGATTGTCTGCAGTCGGTCCTTTGGGGAGCGTGTCACGACGTATGAAGCAATGC 9942 Query 25459 GCCAGGCTATCTG-CAGTTATGCTGCCCGTGGTGCTGAAAAACTACGTGGTGAGCACCAG 25517 | ||||| |||| |||| | || | |||| ||||| || || || || |||| ||| Sbjct 9943 GGCAGGCAGTCTGTCAGT-ACGCCGAGCGTGCAGCTGAGAAGCTGCGCGGCGAGCGTCAG 10001 Query 25518 TATTGCCGTTTTATCTCGGCGTTCGTCAAGACGTCACCGTTCGCGCTTAACGAGCCGTAT 25577 | |||| | ||| | | || || || ||||||||||||||| | ||||| |||||| Sbjct 10002 TTTTGCAGGCATATTGCTGTATTTGTGAAAACGTCACCGTTCGCGTTGAACGAACCGTAT 10061 Query 25578 TACGGCAATTGCGCGTCAGTG--AAGCTTCTCACACCCACGCATGATTCCCGCGACATCA 25635 ||||| || || | | ||||| ||||| | || |||||||| ||| || | ||||| | Sbjct 10062 TACGGGAA-TGTG-GCCAGTGAAAAGCTGATGACTCCCACGCAGGATACCAGGGACATTA 10119 Query 25636 TCAACGCTGTTGTTAAGTGCCTGGACAAAATCTGGCAGGATGGGCACCGCTACCAAAAGG 25695 | ||| | || || ||||| | |||||| | ||||||| || || ||| | Sbjct 10120 TAGCCGCAGCGGTGAAAGCACTGGATAGGATCTGGGTGAATGGGCATCGATATGCAAAAG 10179 Query 25696 CTGGCATTATGCTCGGGGATTTCTTTAGCCAGGGTGTCGCACAGCTTAACCTGTTTGATG 25755 | || |||||| |||||| | | || || ||||||| ||||| || |||| Sbjct 10180 CGGGTTGCATGCTCAATGATTTCACTCCTGACGGGGTTTCACAGCTGAACCTCTTCGATG 10239 Query 25756 A 25756 | Sbjct 10240 A 10240 >seq1547 Length=4346 Score = 93.3 bits (102), Expect = 1e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 21064 GAACGCGCTGGCGAACCACGGAACCGTTGAGCACCAGTATCAGCAATATGGGGAGGTTCG 21123 |||||| || |||||||||||||| || |||||||||| ||||| ||||| || || Sbjct 2299 GAACGCCCTTGCGAACCACGGAACTGTGGAGCACCAGTGGGCACAATACGGGGAAGTGCG 2240 Query 21124 CGCCGACATCCTTGTTGTGAAAACAACAGTCGCTACTGCCGAGCAGGGGCTCGCCGATCT 21183 ||||| ||||| ||||| ||||| || | ||| | || ||| | ||||| || Sbjct 2239 TGCCGATATCCTGGTTGTAAAAACGACGATTGCTGAAGTTGATAAGGCAATGGCCGAACT 2180 Query 21184 TTCCACTTACGTACAGGCACAAATAG 21209 ||| || | |||||||| || |||| Sbjct 2179 TTCGACGCAGGTACAGGCGCAGATAG 2154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157046254254584