Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_018843.1
Length=103299
Score E
Sequences producing significant alignments: (Bits) Value
seq974 269 2e-67
seq949 118 7e-22
>seq974
Length=31311
Score = 269 bits (298), Expect = 2e-67
Identities = 385/543 (71%), Gaps = 12/543 (2%)
Strand=Plus/Minus
Query 68278 GCAGCTGGCGAGCAAGTATCTCGTTCAAAACCGTGTAACTGGCGCTATCTACGAAGGGCC 68337
|||||| | |||| || || ||||| ||||||||||| || | ||||||||| | |
Sbjct 531 GCAGCTCGAAGGCAAATACCTGGTTCAGAACCGTGTAACCGGTGAGATCTACGAAAGCGC 472
Query 68338 ACAGCAACTCTACATGCTGGTCGGCATGTGCCTGTTCCAGAATTGGGAAGATGGCTGCGC 68397
||| ||||| || ||||| | | ||||||||| || | | |||
Sbjct 471 CCAGTTCCTCTATATTCTGGTGGCCGCCTGCCTGTTCTCTAACTA----------TCCGC 422
Query 68398 CGGTAAGACGCGTCTGGAGATGGTTAAGGGCTTCTACGATGTGACCAGTACATTCAAGTT 68457
|| | || |||||||| || ||| | |||||||||| | || |||||| |
Sbjct 421 --GTGACACCCGTCTGGATTACGTGAAGCGTTTCTACGATGCGGTATCGACGTTCAAGAT 364
Query 68458 GTCTCTGCCAACGCCAATTATGGCCGGCGTGCGCACCCCTACTCGCCAGTTCTCCAGCTG 68517
|||||||| |||||||| ||| | |||||||||||||| || || |||||| | |||
Sbjct 363 TTCTCTGCCTACGCCAATCATGTCTGGCGTGCGCACCCCAACCCGTCAGTTCAGCTCCTG 304
Query 68518 CGTGCTGATTGAAGCTGCTGATAGTCTGAAAGGGATTAGCGCTGCGTCTTCCGCAATCAT 68577
||| ||||| || || ||| || ||| | || | ||| |||| ||| ||| |
Sbjct 303 CGTACTGATCGAGTGTGGTGACAGCCTGGATTCCATCAACGCCACGTCCAGCGCCATCGT 244
Query 68578 CGACTACGTGTCACGTCGCGCGGGCATTGGTATTGGCTTTGGGCGTCTGCGTGCGCTGGG 68637
| ||||| || | || || || || || || | || || | |||||||||||
Sbjct 243 GAAATACGTTTCCCAGCGTGCCGGTATCGGCATCAACGCCGGTCGCATCCGTGCGCTGGG 184
Query 68638 CAGTGAGATCCGCAATGGCGAGGCCACCCACACTGGCGTTTTTCCATTCCTGAAACACTT 68697
||| ||| ||| || || || |||||| ||| | | || ||| || |||||
Sbjct 183 CAGCCCGATTCGCGGCGGTGAAGCATTCCACACCGGCTGTATCCCGTTCTATAAGCACTT 124
Query 68698 CCAGACGGCGGTGAAATCCTGCTCTCAGGGCGGTGTTCGCGGCGGCGCTGCTACAGCGTT 68757
|||||||||||| |||||||||||||||||||| || |||||||| ||||| || |||
Sbjct 123 CCAGACGGCGGTAAAATCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCTGCGACCCTGTT 64
Query 68758 CTATCCGATCTGGCACTTGGAAGTTGAAAGTCTGCTGGTGCTGAAAAACAACCGTGGCAT 68817
||| || || |||||| ||||||| ||||| |||||||| ||||||||||||||||| |
Sbjct 63 CTACCCTATGTGGCACCTGGAAGTGGAAAGCCTGCTGGTCCTGAAAAACAACCGTGGTGT 4
Query 68818 TGA 68820
|||
Sbjct 3 TGA 1
>seq949
Length=34148
Score = 118 bits (130), Expect = 7e-22
Identities = 201/289 (70%), Gaps = 2/289 (1%)
Strand=Plus/Plus
Query 79549 ACGACCAACAATCGGATGGAGATGATGGGCGCCCTGATTGCGCTGGAG-CGTCTGAAGTA 79607
|| |||||||| ||||||||| | |||| ||| | | ||||||||| ||| ||| |
Sbjct 29259 ACCACCAACAACCGGATGGAGCTCATGGCGGCCATTGTGGCGCTGGAGGCGTTAAAAGAA 29318
Query 79608 CCCCTGCAACGTGATCCTGCATTCCGACAGCCAGTATCTAAAAAACGGCATGACGCTCTG 79667
| || ||||| | | | ||||||||||||| | | || || || | ||
Sbjct 29319 CAT-TGTGACGTGGTGTTAAGTACCGACAGCCAGTACGTTCGTCAGGGAATTACCCAGTG 29377
Query 79668 GATGAAAGGCTGGAAGCGTAACGGATGGATCACGTCTGAGAAGAAGCCAGTCAAAAACGT 79727
||| | |||||| ||| |||| || | || ||||| || ||||| |||||
Sbjct 29378 GATCCATAACTGGAAAAAACGCGGCTGGAAGACTGCCGATAAGAAACCGGTCAAGAACGT 29437
Query 79728 CGATCTCTGGAAACGTCTTGATGCGGCCGCCAGCCGTCACAATGTCCGCTGGAAGTGGGT 79787
||||||||||||||| |||||||| ||| ||| ||| | | ||| |||||||
Sbjct 29438 CGATCTCTGGAAACGGCTTGATGCCGCCCTGGGCCAGCACCAGATTAAGTGGGAGTGGGT 29497
Query 79788 TAAAGGTCATGCCGGTCATCGCGAGAACGAAATGTGTGACCGTCTGGCG 79836
|||||| || |||||||||| || |||||| |||||| ||||||
Sbjct 29498 TAAAGGGCACGCCGGTCATCCGGAAAACGAACGCTGTGACGAACTGGCG 29546
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 330424775310840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |