Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_018843.1 Length=103299 Score E Sequences producing significant alignments: (Bits) Value seq974 269 2e-67 seq949 118 7e-22 >seq974 Length=31311 Score = 269 bits (298), Expect = 2e-67 Identities = 385/543 (71%), Gaps = 12/543 (2%) Strand=Plus/Minus Query 68278 GCAGCTGGCGAGCAAGTATCTCGTTCAAAACCGTGTAACTGGCGCTATCTACGAAGGGCC 68337 |||||| | |||| || || ||||| ||||||||||| || | ||||||||| | | Sbjct 531 GCAGCTCGAAGGCAAATACCTGGTTCAGAACCGTGTAACCGGTGAGATCTACGAAAGCGC 472 Query 68338 ACAGCAACTCTACATGCTGGTCGGCATGTGCCTGTTCCAGAATTGGGAAGATGGCTGCGC 68397 ||| ||||| || ||||| | | ||||||||| || | | ||| Sbjct 471 CCAGTTCCTCTATATTCTGGTGGCCGCCTGCCTGTTCTCTAACTA----------TCCGC 422 Query 68398 CGGTAAGACGCGTCTGGAGATGGTTAAGGGCTTCTACGATGTGACCAGTACATTCAAGTT 68457 || | || |||||||| || ||| | |||||||||| | || |||||| | Sbjct 421 --GTGACACCCGTCTGGATTACGTGAAGCGTTTCTACGATGCGGTATCGACGTTCAAGAT 364 Query 68458 GTCTCTGCCAACGCCAATTATGGCCGGCGTGCGCACCCCTACTCGCCAGTTCTCCAGCTG 68517 |||||||| |||||||| ||| | |||||||||||||| || || |||||| | ||| Sbjct 363 TTCTCTGCCTACGCCAATCATGTCTGGCGTGCGCACCCCAACCCGTCAGTTCAGCTCCTG 304 Query 68518 CGTGCTGATTGAAGCTGCTGATAGTCTGAAAGGGATTAGCGCTGCGTCTTCCGCAATCAT 68577 ||| ||||| || || ||| || ||| | || | ||| |||| ||| ||| | Sbjct 303 CGTACTGATCGAGTGTGGTGACAGCCTGGATTCCATCAACGCCACGTCCAGCGCCATCGT 244 Query 68578 CGACTACGTGTCACGTCGCGCGGGCATTGGTATTGGCTTTGGGCGTCTGCGTGCGCTGGG 68637 | ||||| || | || || || || || || | || || | ||||||||||| Sbjct 243 GAAATACGTTTCCCAGCGTGCCGGTATCGGCATCAACGCCGGTCGCATCCGTGCGCTGGG 184 Query 68638 CAGTGAGATCCGCAATGGCGAGGCCACCCACACTGGCGTTTTTCCATTCCTGAAACACTT 68697 ||| ||| ||| || || || |||||| ||| | | || ||| || ||||| Sbjct 183 CAGCCCGATTCGCGGCGGTGAAGCATTCCACACCGGCTGTATCCCGTTCTATAAGCACTT 124 Query 68698 CCAGACGGCGGTGAAATCCTGCTCTCAGGGCGGTGTTCGCGGCGGCGCTGCTACAGCGTT 68757 |||||||||||| |||||||||||||||||||| || |||||||| ||||| || ||| Sbjct 123 CCAGACGGCGGTAAAATCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCTGCGACCCTGTT 64 Query 68758 CTATCCGATCTGGCACTTGGAAGTTGAAAGTCTGCTGGTGCTGAAAAACAACCGTGGCAT 68817 ||| || || |||||| ||||||| ||||| |||||||| ||||||||||||||||| | Sbjct 63 CTACCCTATGTGGCACCTGGAAGTGGAAAGCCTGCTGGTCCTGAAAAACAACCGTGGTGT 4 Query 68818 TGA 68820 ||| Sbjct 3 TGA 1 >seq949 Length=34148 Score = 118 bits (130), Expect = 7e-22 Identities = 201/289 (70%), Gaps = 2/289 (1%) Strand=Plus/Plus Query 79549 ACGACCAACAATCGGATGGAGATGATGGGCGCCCTGATTGCGCTGGAG-CGTCTGAAGTA 79607 || |||||||| ||||||||| | |||| ||| | | ||||||||| ||| ||| | Sbjct 29259 ACCACCAACAACCGGATGGAGCTCATGGCGGCCATTGTGGCGCTGGAGGCGTTAAAAGAA 29318 Query 79608 CCCCTGCAACGTGATCCTGCATTCCGACAGCCAGTATCTAAAAAACGGCATGACGCTCTG 79667 | || ||||| | | | ||||||||||||| | | || || || | || Sbjct 29319 CAT-TGTGACGTGGTGTTAAGTACCGACAGCCAGTACGTTCGTCAGGGAATTACCCAGTG 29377 Query 79668 GATGAAAGGCTGGAAGCGTAACGGATGGATCACGTCTGAGAAGAAGCCAGTCAAAAACGT 79727 ||| | |||||| ||| |||| || | || ||||| || ||||| ||||| Sbjct 29378 GATCCATAACTGGAAAAAACGCGGCTGGAAGACTGCCGATAAGAAACCGGTCAAGAACGT 29437 Query 79728 CGATCTCTGGAAACGTCTTGATGCGGCCGCCAGCCGTCACAATGTCCGCTGGAAGTGGGT 79787 ||||||||||||||| |||||||| ||| ||| ||| | | ||| ||||||| Sbjct 29438 CGATCTCTGGAAACGGCTTGATGCCGCCCTGGGCCAGCACCAGATTAAGTGGGAGTGGGT 29497 Query 79788 TAAAGGTCATGCCGGTCATCGCGAGAACGAAATGTGTGACCGTCTGGCG 79836 |||||| || |||||||||| || |||||| |||||| |||||| Sbjct 29498 TAAAGGGCACGCCGGTCATCCGGAAAACGAACGCTGTGACGAACTGGCG 29546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330424775310840