Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_018846.1 Length=60894 Score E Sequences producing significant alignments: (Bits) Value seq997 304 5e-78 >seq997 Length=29618 Score = 304 bits (336), Expect = 5e-78 Identities = 376/510 (74%), Gaps = 17/510 (3%) Strand=Plus/Minus Query 28528 CTGCCGTTCTGGCGCTG--ATTGCCGCAGGTGCTTCTGCGCCTGAAATCCTCGACCAGTT 28585 |||| ||||||| |||| |||| || |||||| |||| | | ||| ||||| ||||| Sbjct 20900 CTGCAGTTCTGGGGCTGGTATTG--GCTGGTGCTCCTGCATCCGTAATTCTCGATCAGTT 20843 Query 28586 TCTGGATGAAAAGGAAGGCAACCACACCACGGCATACCGTGATGGTGTGGGTATCTGGAC 28645 |||| ||||||| || || ||| | |||||| ||| ||||||| ||||| ||||| Sbjct 20842 TCTGAATGAAAAAGAGGGTAACAGCCTCACGGCCTACAAAGATGGTGGTGGTATTTGGAC 20783 Query 28646 CATCTGCCGTGGTGCCACCCAGGTGGATGGTAAGCTTGTCGTCCCCGGCATGAAGTTGTC 28705 || ||||| || || || ||| ||| |||| | || || | |||||||| ||| | Sbjct 20782 TATTTGCCGCGGCGCAACGATGGTTGATCGTAAACCGGTTGTGCAGGGCATGAAATTGAC 20723 Query 28706 GAAGGAAAAATGCGACCAGGTTAACGCCATTGAACGTGATAAGGCGCTGGCATGGGTGG- 28764 ||| |||||| | | ||| || || || ||||| ||||||| ||||||||||| | Sbjct 20722 ACAGGCCAAATGCAATCTGGTGAATGCTATCGAACGCAATAAGGCTCTGGCATGGGTTGA 20663 Query 28765 -CGAAAAACATCAGAGTGCCACTGACCGAACCTCAGAAAGCGGGGATCGCGTCATTCTGT 28823 || || | || | | || || |||||||| |||||||| || ||||| || |||||| Sbjct 20662 CCGCAATATTTCGG--TACCGCTTACCGAACCGCAGAAAGCTGGAATCGCATCTTTCTGT 20605 Query 28824 CCTTACAACATTGGCCCCGGTAAGTGTTTCCCGTCGACGTTTTATAAACGAATTAATGCA 28883 || |||||||| || || |||||||| |||||||| ||||| ||||| || || ||||| Sbjct 20604 CCGTACAACATCGGGCCGGGTAAGTGCTTCCCGTCAACGTTCTATAAGCGCATCAATGCC 20545 Query 28884 GGCGATCGCAGGGGAGCGTGTGAAGCGATTCGCTGGTGGATTAAGGACGGTGGCAGAGAC 28943 || || ||| || || || || || |||||||||||||||| |||| |||| | ||| Sbjct 20544 GGTGACCGCCCCGGGGCATGCGAGGCAATTCGCTGGTGGATTAGAGACGCTGGCCGCGAC 20485 Query 28944 TGCCG------TATCCGCTCAAATAA---TTGCTACGGTCAGGTATCCCGTCGCGACCAG 28994 ||||| || || || || ||||||||||||||| || || |||||| Sbjct 20484 TGCCGCCTGACTAAAGGCCAGAAGAACGGCTGCTACGGTCAGGTAGAACGGCGAGACCAG 20425 Query 28995 GAGAGTGCGCTGGCATGCTGGGGTATCGAC 29024 || ||||| |||| |||||||| || ||| Sbjct 20424 GAAAGTGCTTTGGCGTGCTGGGGGATAGAC 20395 Score = 116 bits (128), Expect = 1e-21 Identities = 263/400 (66%), Gaps = 24/400 (6%) Strand=Plus/Minus Query 30094 AATCATTACCGTGATAACGCCATCGCTTACAAAGAGCAGCGCGATAAAGCCACAT----- 30148 || || || || || ||||||||| | |||||||||||||||||||||||||| Sbjct 18185 AACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGATAAAGCCACTGAGAAA 18126 Query 30149 ----------------CCATCATCGCAGATATGCAGAAGCGGCAACGTGATGTAGCAGAA 30192 ||| |||| ||| ||||||| || || ||||||| || | Sbjct 18125 CTCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGATGCCGCTGCG 18066 Query 30193 CTTGACGCCAGATACACAAAGGAGCTTGCTGATGCTAATGCGACTATCGAAAGTCTCCGT 30252 || || |||| |||||| || | |||||||| || | | || || |||| | | Sbjct 18065 CTGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAGATATCATTGAGCGTCTGCAT 18006 Query 30253 GCTGATGTTTCTGCTGGGCGTAAGCGCCTGCAAGTCGCCGCCACCTGT---GCAAAGTCA 30309 ||||| |||||| |||||||| ||||| || ||| | |||| || || | Sbjct 18005 AGCGATGTCATTGCTGGCCGTAAGCGGCTGCAGCTCAACGCAAACTGTCCCGCGAACGGA 17946 Query 30310 ACGACCGGAGCCAGCAGCATGGGCGATGGAGAAAGTCCAGGACTTACAGCAGATGCTGAA 30369 ||||||| || || |||||||||||| | || ||||||| | |||||| Sbjct 17945 GCGACCGGCACCGGCGGCATGGGCGATGCTTCCGGCCCCAGACTTACTGACTCCGCTGAA 17886 Query 30370 CTCAATTATTACCGTCTCAGAAGTGGAATCGACAAGATAACTGCGCAGGTTAACTACCTG 30429 | |||||| | ||||||| |||||| || | || |||||| ||| ||| Sbjct 17885 CGGGATTATTTCATCCTCAGAAAGCGAATCGTCACAGTGACGAAGCAGGTCGGCTATCTG 17826 Query 30430 CAGGAATACATCAGGACGCAATGCCTGAAATAAttttttt 30469 ||| | ||||| || || || ||| | |||||| ||||| Sbjct 17825 CAGAACTACATAAGCACTCAGTGCTTAAAATAAAGTTTTT 17786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194735051324768