Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_018846.1
Length=60894
Score E
Sequences producing significant alignments: (Bits) Value
seq997 304 5e-78
>seq997
Length=29618
Score = 304 bits (336), Expect = 5e-78
Identities = 376/510 (74%), Gaps = 17/510 (3%)
Strand=Plus/Minus
Query 28528 CTGCCGTTCTGGCGCTG--ATTGCCGCAGGTGCTTCTGCGCCTGAAATCCTCGACCAGTT 28585
|||| ||||||| |||| |||| || |||||| |||| | | ||| ||||| |||||
Sbjct 20900 CTGCAGTTCTGGGGCTGGTATTG--GCTGGTGCTCCTGCATCCGTAATTCTCGATCAGTT 20843
Query 28586 TCTGGATGAAAAGGAAGGCAACCACACCACGGCATACCGTGATGGTGTGGGTATCTGGAC 28645
|||| ||||||| || || ||| | |||||| ||| ||||||| ||||| |||||
Sbjct 20842 TCTGAATGAAAAAGAGGGTAACAGCCTCACGGCCTACAAAGATGGTGGTGGTATTTGGAC 20783
Query 28646 CATCTGCCGTGGTGCCACCCAGGTGGATGGTAAGCTTGTCGTCCCCGGCATGAAGTTGTC 28705
|| ||||| || || || ||| ||| |||| | || || | |||||||| ||| |
Sbjct 20782 TATTTGCCGCGGCGCAACGATGGTTGATCGTAAACCGGTTGTGCAGGGCATGAAATTGAC 20723
Query 28706 GAAGGAAAAATGCGACCAGGTTAACGCCATTGAACGTGATAAGGCGCTGGCATGGGTGG- 28764
||| |||||| | | ||| || || || ||||| ||||||| ||||||||||| |
Sbjct 20722 ACAGGCCAAATGCAATCTGGTGAATGCTATCGAACGCAATAAGGCTCTGGCATGGGTTGA 20663
Query 28765 -CGAAAAACATCAGAGTGCCACTGACCGAACCTCAGAAAGCGGGGATCGCGTCATTCTGT 28823
|| || | || | | || || |||||||| |||||||| || ||||| || ||||||
Sbjct 20662 CCGCAATATTTCGG--TACCGCTTACCGAACCGCAGAAAGCTGGAATCGCATCTTTCTGT 20605
Query 28824 CCTTACAACATTGGCCCCGGTAAGTGTTTCCCGTCGACGTTTTATAAACGAATTAATGCA 28883
|| |||||||| || || |||||||| |||||||| ||||| ||||| || || |||||
Sbjct 20604 CCGTACAACATCGGGCCGGGTAAGTGCTTCCCGTCAACGTTCTATAAGCGCATCAATGCC 20545
Query 28884 GGCGATCGCAGGGGAGCGTGTGAAGCGATTCGCTGGTGGATTAAGGACGGTGGCAGAGAC 28943
|| || ||| || || || || || |||||||||||||||| |||| |||| | |||
Sbjct 20544 GGTGACCGCCCCGGGGCATGCGAGGCAATTCGCTGGTGGATTAGAGACGCTGGCCGCGAC 20485
Query 28944 TGCCG------TATCCGCTCAAATAA---TTGCTACGGTCAGGTATCCCGTCGCGACCAG 28994
||||| || || || || ||||||||||||||| || || ||||||
Sbjct 20484 TGCCGCCTGACTAAAGGCCAGAAGAACGGCTGCTACGGTCAGGTAGAACGGCGAGACCAG 20425
Query 28995 GAGAGTGCGCTGGCATGCTGGGGTATCGAC 29024
|| ||||| |||| |||||||| || |||
Sbjct 20424 GAAAGTGCTTTGGCGTGCTGGGGGATAGAC 20395
Score = 116 bits (128), Expect = 1e-21
Identities = 263/400 (66%), Gaps = 24/400 (6%)
Strand=Plus/Minus
Query 30094 AATCATTACCGTGATAACGCCATCGCTTACAAAGAGCAGCGCGATAAAGCCACAT----- 30148
|| || || || || ||||||||| | ||||||||||||||||||||||||||
Sbjct 18185 AACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGATAAAGCCACTGAGAAA 18126
Query 30149 ----------------CCATCATCGCAGATATGCAGAAGCGGCAACGTGATGTAGCAGAA 30192
||| |||| ||| ||||||| || || ||||||| || |
Sbjct 18125 CTCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGATGCCGCTGCG 18066
Query 30193 CTTGACGCCAGATACACAAAGGAGCTTGCTGATGCTAATGCGACTATCGAAAGTCTCCGT 30252
|| || |||| |||||| || | |||||||| || | | || || |||| | |
Sbjct 18065 CTGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAGATATCATTGAGCGTCTGCAT 18006
Query 30253 GCTGATGTTTCTGCTGGGCGTAAGCGCCTGCAAGTCGCCGCCACCTGT---GCAAAGTCA 30309
||||| |||||| |||||||| ||||| || ||| | |||| || || |
Sbjct 18005 AGCGATGTCATTGCTGGCCGTAAGCGGCTGCAGCTCAACGCAAACTGTCCCGCGAACGGA 17946
Query 30310 ACGACCGGAGCCAGCAGCATGGGCGATGGAGAAAGTCCAGGACTTACAGCAGATGCTGAA 30369
||||||| || || |||||||||||| | || ||||||| | ||||||
Sbjct 17945 GCGACCGGCACCGGCGGCATGGGCGATGCTTCCGGCCCCAGACTTACTGACTCCGCTGAA 17886
Query 30370 CTCAATTATTACCGTCTCAGAAGTGGAATCGACAAGATAACTGCGCAGGTTAACTACCTG 30429
| |||||| | ||||||| |||||| || | || |||||| ||| |||
Sbjct 17885 CGGGATTATTTCATCCTCAGAAAGCGAATCGTCACAGTGACGAAGCAGGTCGGCTATCTG 17826
Query 30430 CAGGAATACATCAGGACGCAATGCCTGAAATAAttttttt 30469
||| | ||||| || || || ||| | |||||| |||||
Sbjct 17825 CAGAACTACATAAGCACTCAGTGCTTAAAATAAAGTTTTT 17786
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 194735051324768
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |