Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_018855.1 Length=169158 Score E Sequences producing significant alignments: (Bits) Value seq236 181 1e-40 seq637 140 4e-28 seq895 82.4 8e-11 >seq236 Length=545527 Score = 181 bits (200), Expect = 1e-40 Identities = 152/185 (82%), Gaps = 1/185 (1%) Strand=Plus/Plus Query 43722 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 43781 |||||||| ||||| ||||| ||||| ||||| || ||||| ||| || || ||| || Sbjct 30716 GGTGGTCAGCACCTTAACGTAAACGTACTGCGCCGCGAAACGCTGATGGACGCGGTTGAG 30775 Query 43782 CATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 43841 || || |||||||| |||||||||||||| || || || |||||||| || ||||| ||| Sbjct 30776 CACCCAGAAAAATACCCGCAGCTGACCATTCGCGTGTCTGGTTATGCGGTACGCTTCAAC 30835 Query 43842 TCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGGACATTTACCGAGAGTCTATAA 43901 |||||||| || ||||||||||||||||||||||| || || ||||| || || || ||| Sbjct 30836 TCTCTGACCCCAGAACAGCAGCGCGACGTTATCGCGCGTACCTTTACTGAAAGCCTGTAA 30895 Query 43902 TGGCT 43906 |||| Sbjct 30896 -GGCT 30899 >seq637 Length=122170 Score = 140 bits (154), Expect = 4e-28 Identities = 131/167 (78%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 43722 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 43781 |||||||| ||||||||||| ||||| || ||||||| ||| ||||| | | Sbjct 107285 GGTGGTCAGCACCTGAACGTGAACGTAATGAACCGTGAAATGCTGCTCGATGCGATGGAA 107226 Query 43782 CATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 43841 ||||| || |||||||| |||||||||||||||||||| || || ||||| || |||||| Sbjct 107225 CATCCTGAGAAATATCCTCAGCTGACCATCCGTGTATCTGGCTACGCAGTACGTTTTAAC 107166 Query 43842 TCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGGACATTTAC 43888 || |||||| |||||||||| ||||||||| | || || || || Sbjct 107165 TCCCTGACTAAAGAACAGCAGCAGGACGTTATCACCCGTACTTTCAC 107119 >seq895 Length=39754 Score = 82.4 bits (90), Expect = 8e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 43722 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 43781 || || || ||||||||||||||||| || || || | || ||||| || | Sbjct 12046 GGCGGGCAGCACCTGAACGTTAACGTGATGAACCGGGAGATGCTCCTCGATGCCATTGCG 11987 Query 43782 CATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 43841 ||||| || || || ||| | ||||||||||| || || || ||||| || || ||||| Sbjct 11986 CATCCCGAGAACTACCCGAACCTGACCATCCGCGTCTCGGGCTATGCGGTGCGGTTTAAT 11927 Query 43842 TCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGGACATTTACC 43889 | ||||| | || ||||||| || || || | || || |||||| Sbjct 11926 GCCCTGACGCGCGAGCAGCAGCAGGATGTGATTTCGCGAACGTTTACC 11879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541165464092320