Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_018855.1
Length=169158
Score E
Sequences producing significant alignments: (Bits) Value
seq236 181 1e-40
seq637 140 4e-28
seq895 82.4 8e-11
>seq236
Length=545527
Score = 181 bits (200), Expect = 1e-40
Identities = 152/185 (82%), Gaps = 1/185 (1%)
Strand=Plus/Plus
Query 43722 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 43781
|||||||| ||||| ||||| ||||| ||||| || ||||| ||| || || ||| ||
Sbjct 30716 GGTGGTCAGCACCTTAACGTAAACGTACTGCGCCGCGAAACGCTGATGGACGCGGTTGAG 30775
Query 43782 CATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 43841
|| || |||||||| |||||||||||||| || || || |||||||| || ||||| |||
Sbjct 30776 CACCCAGAAAAATACCCGCAGCTGACCATTCGCGTGTCTGGTTATGCGGTACGCTTCAAC 30835
Query 43842 TCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGGACATTTACCGAGAGTCTATAA 43901
|||||||| || ||||||||||||||||||||||| || || ||||| || || || |||
Sbjct 30836 TCTCTGACCCCAGAACAGCAGCGCGACGTTATCGCGCGTACCTTTACTGAAAGCCTGTAA 30895
Query 43902 TGGCT 43906
||||
Sbjct 30896 -GGCT 30899
>seq637
Length=122170
Score = 140 bits (154), Expect = 4e-28
Identities = 131/167 (78%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 43722 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 43781
|||||||| ||||||||||| ||||| || ||||||| ||| ||||| | |
Sbjct 107285 GGTGGTCAGCACCTGAACGTGAACGTAATGAACCGTGAAATGCTGCTCGATGCGATGGAA 107226
Query 43782 CATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 43841
||||| || |||||||| |||||||||||||||||||| || || ||||| || ||||||
Sbjct 107225 CATCCTGAGAAATATCCTCAGCTGACCATCCGTGTATCTGGCTACGCAGTACGTTTTAAC 107166
Query 43842 TCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGGACATTTAC 43888
|| |||||| |||||||||| ||||||||| | || || || ||
Sbjct 107165 TCCCTGACTAAAGAACAGCAGCAGGACGTTATCACCCGTACTTTCAC 107119
>seq895
Length=39754
Score = 82.4 bits (90), Expect = 8e-11
Identities = 119/168 (71%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 43722 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 43781
|| || || ||||||||||||||||| || || || | || ||||| || |
Sbjct 12046 GGCGGGCAGCACCTGAACGTTAACGTGATGAACCGGGAGATGCTCCTCGATGCCATTGCG 11987
Query 43782 CATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 43841
||||| || || || ||| | ||||||||||| || || || ||||| || || |||||
Sbjct 11986 CATCCCGAGAACTACCCGAACCTGACCATCCGCGTCTCGGGCTATGCGGTGCGGTTTAAT 11927
Query 43842 TCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGGACATTTACC 43889
| ||||| | || ||||||| || || || | || || ||||||
Sbjct 11926 GCCCTGACGCGCGAGCAGCAGCAGGATGTGATTTCGCGAACGTTTACC 11879
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 541165464092320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |