Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_019398.1 Length=178193 Score E Sequences producing significant alignments: (Bits) Value seq974 212 7e-50 seq962 194 2e-44 seq236 168 8e-37 seq754 82.4 9e-11 >seq974 Length=31311 Score = 212 bits (234), Expect = 7e-50 Identities = 263/359 (73%), Gaps = 6/359 (2%) Strand=Plus/Minus Query 40720 CCTACGCCTATTATGGCGGGTGTGCGTACTCCTACGCGTCAGTTCTCCAGTTGTGTTGTA 40779 |||||||| || ||| | || ||||| || || || ||||||||| | || || | Sbjct 356 CCTACGCCAATCATGTCTGGCGTGCGCACCCCAACCCGTCAGTTCAGCTCCTGCGTACTG 297 Query 40780 ATCGAATCGGGTGATTCTCTGGGTTCTCTGAACGCTGTTACGTCC---GCGATCGTGAAG 40836 ||||| | ||||| |||| ||| | ||||| |||||| || |||||||| Sbjct 296 ATCGAGTGTGGTGACAGCCTGGATTCCATCAACGCC---ACGTCCAGCGCCATCGTGAAA 240 Query 40837 TATATCTCTCAACGTGCTGGTATTGGTGTCAACGCCGGACACATTCGCGCTATGGGTTCA 40896 || | || || ||||| ||||| || |||||||||| | ||| || || |||| Sbjct 239 TACGTTTCCCAGCGTGCCGGTATCGGCATCAACGCCGGTCGCATCCGTGCGCTGGGCAGC 180 Query 40897 AAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTTATCCCGTTCTGGAAACACATTCAG 40956 || || || ||||||||| | || || ||| ||||||||||| || ||| | ||| Sbjct 179 CCGATTCGCGGCGGTGAAGCATTCCACACCGGCTGTATCCCGTTCTATAAGCACTTCCAG 120 Query 40957 ACGGCGGTTAAATCCTGTTCCCAGGGCGGTGTTCGTGGTGGTGCAGCAACCCTGTATTAT 41016 |||||||| |||||||| || |||||||| || || || ||||| || ||||||| || Sbjct 119 ACGGCGGTAAAATCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCTGCGACCCTGTTCTAC 60 Query 41017 CCGATCTGGCATCTTGAAGTTGAAAACCTGTTGGTTCTGAAAAATAACCGTGGCGTTGA 41075 || || ||||| || ||||| |||| |||| |||| |||||||| |||||||| ||||| Sbjct 59 CCTATGTGGCACCTGGAAGTGGAAAGCCTGCTGGTCCTGAAAAACAACCGTGGTGTTGA 1 >seq962 Length=32987 Score = 194 bits (214), Expect = 2e-44 Identities = 1003/1580 (63%), Gaps = 67/1580 (4%) Strand=Plus/Minus Query 153310 CAACGAGAACGCGAACAAAGACGCAAGGGTATTCCCTACACAGCGCGATCTGCTGGCTGG 153369 ||| || ||||| ||||||||| | || |||| || ||||||||||||||||| || Sbjct 25741 CAATGAAAACGCCAACAAAGACAGTAAAGTGATCCCCACCCAGCGCGATCTGCTGGCCGG 25682 Query 153370 TATCGTAGCGAAACACTTCGCACGTAACCACATTCTGCCAAAACACATTGTAGAAGCGCA 153429 |||||| || ||||||| || ||| | ||| | ||||| | | || |||||| Sbjct 25681 TATCGTCGCCAAACACTATGCCCGTCAGCACCTGCTGCCGCGCGATGTGGTCTCAGCGCA 25622 Query 153430 TGATTCTGGTGATATCCATTATCATGATCTGGATTACAGCCCGTTCACGCC-ATACACAA 153488 || ||||| ||||| ||||| ||||| || || |||||| || || ||| Sbjct 25621 CGAGCGCGGTGAGATCCACTATCACGATCTCGACTATTCACCGTTCTTCCCGATGTTCAA 25562 Query 153489 ACTGCTGTCTGGTGGATTTGAAAGGTATGCTGGCTAATGGCTTCAAGATGGGTAACGCAG 153548 ||| ||| | || ||||||| |||||| | | || || || ||||||||||| | Sbjct 25561 -CTGTATGCTGATTGACCTGAAAGGCATGCTGACCCACGGGTTTAAAATGGGTAACGCCG 25503 Query 153549 ACATCGAACCCCCGAAATCAATCGGTGTTGCGACTGCTCTTATGGCACAGATCACCGCAC 153608 | || ||||| || ||||| ||| || ||||| | | ||||||||| | ||| | Sbjct 25502 AGATTGAACCGCCAAAATCCATCTCCACCGCCACTGCGGTCACGGCACAGATTATCGCCC 25443 Query 153609 AGATTGCCTCTCACCAGTACGGCGGGACAACCTTTGCTAACGTTGATAAAGTGCTGGCTC 153668 || | ||| ||| |||||||| || ||| || | |||| |||||||||| | Sbjct 25442 AGGTCGCCAGCCACATTTACGGCGGCACCACCATTAACCGCATTGACGAAGTGCTGGCCC 25383 Query 153669 CATATGT----TCAAATGACATATGATAAGCACTTTAAAGATGCCAAAAAGTATCAAATC 153724 | | ||| ||| || | |||||| ||| ||| || ||| || ||| Sbjct 25382 CGTTTGTGACCGCAAGCTTCA----ACAAGCACCGCAAAACGGCCGAAGAGTGGCAGATC 25327 Query 153725 CCTCGTGATGTTCAGTAT--GCAATAGATAAAACTGA-AAAGGATGTTTTCGACGCGTTT 153781 || | | ||| ||| | | ||||| |||| || | | |||||||| Sbjct 25326 CCGGACGCCGACGGCTATGCGCACTCG--CGCACTGAGAAAGAGTGCTAT-GACGCGTTC 25270 Query 153782 CAGTCATATGAATACGAAGTAAACACCCTGCATACTGCGAACGGTCAAACCCCGTTTGTT 153841 ||||| || || || || || ||||||||||| || ||||| || || |||||||| Sbjct 25269 CAGTCGCTGGAGTATGAGGTGAATACCCTGCATACCGCCAACGGCCAGACGCCGTTTGTG 25210 Query 153842 ACAATTACGTTCGGTACTGGTCAATCCCGATGTGAA---CGCATGATCCAGAAAGCGATT 153898 || || ||| | |||| || || | || ||| || |||||||| | | || Sbjct 25209 AC-CTTCGGTTTTGGCCTGGGCA--CCAGCTGGGAATCGCGTTTGATCCAGCAGTCCATC 25153 Query 153899 CTGAAAAACCGTATTCGCGGCCTGGGTAAAGAGGGTATCACTCCGGTATTCCCGAAACTG 153958 ||| |||||||| |||||| ||||| | | | || |||| |||||||||||| Sbjct 25152 CTGCGCAACCGTATCTCCGGCCTCGGTAAGAACCGCAAAACGGCGGTGTTCCCGAAACTG 25093 Query 153959 GTTATGTTCATGGAAAAAGGAATCAACCTTGATCCAGAGGATCGCAACTATGACATCAAA 154018 || | ||| | || | |||| | | |||| || || ||||||||| Sbjct 25092 GTATTCGCCATCCGCGACGGGCTGAACCACAAAGTTGGCGATCCGAATTACGACATCAAA 25033 Query 154019 CAACTTGCCCTGGAATGTGCTTCTAAACGCATGTACCCAGATATCATTA-----GTTCAG 154073 || || || ||||| || || || ||||||||||| ||||| | | | |||| Sbjct 25032 CAGCTGGCGCTGGAGTGCGCGAGCAAGCGCATGTACCCGGATATTCTGAACTACGATCAG 24973 Query 154074 CTAACAACCGTGCTATTACTGGTTCTAGCGTTCCTGTATCTCCTATGGGTTGTCGCAGTT 154133 | || | | || || | | || | | | || |||||||| ||||| | Sbjct 24972 GTCGTAAAAG-----TAACCGGGT----CATT--TAAAACGCCAATGGGTTGCCGCAGCT 24924 Query 154134 TCCTTAGCGTGTGGCATGATGATAACGGTAATGAAATTCTTGATGGACGTAATAACCTGG 154193 |||| |||| | | ||||| ||||| | | || | || || ||||| ||||| | Sbjct 24923 TCCTCGGCGTATACGAAGATGAAAACGGCGAGCAGATCCACGACGGGCGTAACAACCTCG 24864 Query 154194 GTGTGGTGACAATCAACCTCCCGCGTATTGCTCTTGAAGCACANNNNNNNNNNNNNNNNN 154253 | || | | | ||||| ||||| || || || || || || Sbjct 24863 GCGTCATCAGCCTGAACCTGCCGCGCATCGCGCTGGAGGC-CAAAGGCAATGAAGCTGAA 24805 Query 154254 NNNNNNCTTTTTGGCGTATTCTTGATGATCGTCTG-GGTTTGTGCTTTGAAGCCCTGATG 154312 || ||| | || ||||| || ||| | | | || | || |||||| Sbjct 24804 --------TTCTGGACACTGCTGGATGAACGCCTGCAGCTGGCGC-GCAAGGCGCTGATG 24754 Query 154313 ACTCGAATTGATAGTCTACGTGGTGTTAAAGCCAGTGTTGCGCCTATCCTGTACACAGAA 154372 || || || | | || || || |||||| | || ||||||||||| || | ||| Sbjct 24753 ACCCGTATCGCCCGCCTTGAAGGGGTAAAAGCCCGCGTGGCGCCTATCCTCTATATGGAA 24694 Query 154373 GGTGCTTTTGGTGTCCGACTGAAACCGGATGATGAAAT-TCTGGAACTGTTCAAAAATGG 154431 || || | || || || |||||| |||| ||||| | ||| || | |||||||| || Sbjct 24693 GGGGCCTGCGGCGTGCGCCTGAAAGCGGACGATGACGTCTCT-GAGATCTTCAAAAACGG 24635 Query 154432 GCGTAGTTCTATCAGTCTGGGTTATATTGGACTGCACGAAA-CGCTGTTG--ATGTTTGG 154488 || || || ||||| ||||| || | || |||| | | || ||| ||| Sbjct 24634 CCGCGCGTCGATTTCGCTGGGCTATATCGGCATCCATGAAACCATTAATGCCCTGTCTGG 24575 Query 154489 CTCAGGCCAGCATCCATTCGATCGTATCG-GCTCCCAGAAATTAG---GTCGATTGATCA 154544 | ||| |||| | || | || ||| | |||| | | |||||| ||| Sbjct 24574 C---GGCACGCATATGTATGACAGCGACGCGCTACGTGAAAAAGGCGTGGCGATTGTTCA 24518 Query 154545 TTGAATATCTCCGCGCTGCAACCGAAGCATGGAAGAAGAAAACTGGTTTTGGATTCAGTC 154604 | || |||| ||| || ||||| || |||| || | || ||||| | Sbjct 24517 GCG----CCTGCGCGATGCCGTGGACCAGTGGAAAGAGGAAACCGGCTACGGTTTCAGCC 24462 Query 154605 TGTATTCAACCCC-AGCGGAATCGCTCTGCCATCGCTTCTGTAAGCTGGACTTTGAGAAG 154663 |||| ||||| |||| | | || ||| | |||||||| |||||| | || Sbjct 24461 TGTACAGTACCCCAAGCGAGAAC-CTGTGCGACCGCTTCTGCCGTCTGGACACCGCCGAG 24403 Query 154664 TTCGGAAGCGTCAAGGGGATCACGGATAAAGGCTGGTACACAAACAGTTTCCACCTTGAC 154723 ||||| | ||| | || | || |||||||| | ||||| ||||| |||||||| ||| Sbjct 24402 TTCGGCATCGTGGAAGGCGTGACCGATAAAGGTTACTACACCAACAGCTTCCACCTCGAC 24343 Query 154724 GTTGATCGCAAGGTGACACCGTTCGAGAAAATCGACTATGAAGCCGATTATCATTACATC 154783 || || ||||| | |||| ||| || ||||||| |||||| | |||| ||| Sbjct 24342 GTGGAGAAGAAGGTAAACCCGTACGACAAGATCGACTTTGAAGCGGCGTATCCGCCGATC 24283 Query 154784 GCTACTGCTGGTCATATCAGTTATGTTGAATTCCCTGATATGAAAAACAACCTGCAAGCC 154843 || | | || ||| | || | || | ||| | || | |||||||| | || Sbjct 24282 GCCAACGGCGGCTTCATCTGCTACGGCGAGTACCCGAACATTCAGCACAACCTGAAGGCG 24223 Query 154844 CTGGAAAAAGTCTGGGATTA 154863 |||||| | || |||||||| Sbjct 24222 CTGGAAGACGTGTGGGATTA 24203 >seq236 Length=545527 Score = 168 bits (186), Expect = 8e-37 Identities = 149/186 (80%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 51000 GTGGAAGGTGGACAACACTTAAACGTAAACGTGTTGCGCCGCGAAACTCTGGAAGATGCT 51059 ||||||||||| || ||| | ||||||||||| ||||||||||||| ||| || || Sbjct 30710 GTGGAAGGTGGTCAGCACCTTAACGTAAACGTACTGCGCCGCGAAACGCTGATGGACGCG 30769 Query 51060 GTGAAGCATCCAGAAAAATACCCACAGTTAACGATCCGTGTGTCCGGCTATGCAGTGCGT 51119 || |||| |||||||||||||| ||| | || || || ||||| || ||||| || || Sbjct 30770 GTTGAGCACCCAGAAAAATACCCGCAGCTGACCATTCGCGTGTCTGGTTATGCGGTACGC 30829 Query 51120 TTCAATTCACTGACTCCTGAACAACAGCGCGACGTTATCGCCCGAACCTTTACAGAGAGT 51179 ||||| || ||||| || ||||| ||||||||||||||||| || |||||||| || || Sbjct 30830 TTCAACTCTCTGACCCCAGAACAGCAGCGCGACGTTATCGCGCGTACCTTTACTGAAAGC 30889 Query 51180 CTATAA 51185 || ||| Sbjct 30890 CTGTAA 30895 >seq754 Length=71200 Score = 82.4 bits (90), Expect = 9e-11 Identities = 200/303 (66%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 39580 TTGACCAGATTGCAAAAATCATCGAACAACTGAAAACCACACCAGACGATCGCGGGATCA 39639 |||||||||| | | | || | || ||||||| | |||||| ||| | |||| Sbjct 66341 TTGACCAGATCACCACCGTGATGAACCAGCTGAAAAACGATCCAGACTCGCGCCGAATCA 66400 Query 39640 TCGTTTCCGCATGGAACCCTGTTGATCTGGATGATATGGCTCTGCGTCCGTGTCACTGTT 39699 | |||||||| |||||| | || ||||| | ||||| ||| ||||| ||| | Sbjct 66401 TTGTTTCCGCCTGGAACGTCGGCGAGCTGGACAAAATGGCGCTGGCACCGTGCCACGCGT 66460 Query 39700 TCTTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTTCAGTTG 39759 ||||||||||| ||| |||| || || || ||| || |||||||| || Sbjct 66461 TCTTCCAGTTCTACGTCGCTGACGGAAAGCTCTCCTGCCAGCTCTACCAGCGTTCCTGTG 66520 Query 39760 ATGTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTACGCTCTCCTGACGCATATTATCG 39819 |||| ||| | || ||||||| || || ||| ||| || || | ||||| || | Sbjct 66521 ATGTGTTCCTCGGCCTGCCGTTTAACATTGCCAGCTATGCGCTGTTAGTCCATATGATGG 66580 Query 39820 CTGATATTTGCGGGTATGAAGTGGGCGATCTGGTTTGGACTGGCGGTGATGTCCATATCT 39879 | | || | |||||||| ||| | || ||||| || || || |||| ||| Sbjct 66581 CGCAGCAGTGTGACCTGGAAGTGGGGGATTTTGTCTGGACCGGTGGGGACACCCATCTCT 66640 Query 39880 ACA 39882 ||| Sbjct 66641 ACA 66643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570076815740720