Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_019407.1
Length=218929
Score E
Sequences producing significant alignments: (Bits) Value
seq1012 140 5e-28
>seq1012
Length=28740
Score = 140 bits (154), Expect = 5e-28
Identities = 403/604 (67%), Gaps = 37/604 (6%)
Strand=Plus/Plus
Query 84718 CGCAGAGGTTCGACTGGCGGACCTTGAGGCCGAGCTT---CTTCTGCGCCTCGGGGAAGT 84774
|||| ||||||||||| |||||| ||||| || | || |||| | | | |
Sbjct 27667 CGCACAGGTTCGACTGTTTGACCTTCAGGCCCAGGTCACGCTGGTGCGGCGCC---ATCT 27723
Query 84775 GGCGGTTGGAGGTGTCGATGAAGTGGATGTAGGGCTCGCCCGTCTGCATCCGCGTCTCGA 84834
||||||| |||||| |||| | ||||||||||| |||||||| || | ||||
Sbjct 27724 GGCGGTTCACCGTGTCGGAGAAGATCAGATAGGGCTCGCCGGTCTGCATGCGGATGTCGA 27783
Query 84835 TCAGCAGGCGCCACAGTTCGCGCGCCCGCTCGACGCGGATCA---CCTCGCCGGTCTTGG 84891
|||| | |||||| || ||| || |||||| ||| | |||||| |||||
Sbjct 27784 GCAGCTTGGTCCACAG--CGAGCGGGCG-TCGACGGTCTTCAAGACTTCGCCGTCCTTGG 27840
Query 84892 GCGAGCGCAGGGCGAACTCGGTGTCGTCGCGCACCGCGATCATGAACTCGTCGGTGACGT 84951
|||| |||| |||| | | | | |||||| ||||||||||||||||||||
Sbjct 27841 GCGATTTCAGGTCGAAGGTCGCGCCAACCTTCACCGCTTCCATGAACTCGTCGGTGACGT 27900
Query 84952 TGACGGCGTTGTGCAGGTTGGTGATCTTGCGGTTCTGGTCGCCGCCGGTAGGCTTGCGGG 85011
||| | ||| |||||||| | ||||||||| | | |||| | ||| ||||||
Sbjct 27901 TGATGCCGTGATGCAGGTTCAGGGACTTGCGGTT---GAAGTCGCCCGAAGGTTTGCGGA 27957
Query 85012 CCGTGATGAACTCGCGGATTTCCGGGTGGCTGATGTCCAGATAGACGGCGTTGGAGCCCC 85071
| | ||||| ||| |||||||| |||||| || || || ||| || || |
Sbjct 27958 TCTCAAGAAACTCCTCGATCTCCGGGTGATGGATGTCGAGGTACACAGCGGCCGAACCAC 28017
Query 85072 GGCGCGTGCCGCCTTGGCTGACGGCGAGAATCAGGCGATCGTCCACCGC---CATGAACG 85128
||||| |||||| | || || ||| | || ||||| | | ||||| |
Sbjct 28018 GGCGCAGCGAGCCTTGCGAAATCGCCAGGGTCA-GTGA--GTCCATCACGCGGATGAAGG 28074
Query 85129 GGATCACGCC---GGTC--GACTGCGAACCCTTCGAGGTCTTCTCGCCCAGGCCGCGCAG 85183
|||| | ||| |||| | | ||| |||||| ||| ||||| | | ||| |
Sbjct 28075 GGATGATGCCCGAGGTCTTGCCCGCG--CCCTTC---ACCTTTTCGCCGATGGAGCGGAC 28129
Query 85184 GGCGCCGTAGTAGGAGCCGATGCCGCCGCCCATCGACGAGAGCCAGATGACCTCGT--CA 85241
| |||| |||||| ||||||||||||||| | |||| ||| | | | |||| ||
Sbjct 28130 GCCGCCCCAGTAGGTGCCGATGCCGCCGCCGTTGGACGCCAGCGATACGTTTTCGTTCCA 28189
Query 85242 TA-GTGCTCGGAGATCGACTCGCGGCTGTCCTCGATCGCGGTGAGGAAGCAGGAGATCGG 85300
| || || ||| || || | ||||| || ||| | |||||||||||||||||
Sbjct 28190 GACGTTCT-GGATGCCG--TCCAGACTGTCGCTGACGGCGTTCAGGAAGCAGGAGATCGG 28246
Query 85301 CAGG 85304
||||
Sbjct 28247 CAGG 28250
Score = 131 bits (144), Expect = 2e-25
Identities = 125/159 (79%), Gaps = 6/159 (4%)
Strand=Plus/Plus
Query 83162 GAAGTGCTGGATCGAACCCTCGGCCGCGACGATCGACTTCCAGACCGCCTCGGTGTCCAG 83221
|| |||||||| |||||| ||| | | | |||||| ||||||||||||||||||| |
Sbjct 26985 GATGTGCTGGACCGAACCTTCGTGCTCCAGGATCGAGTTCCAGACCGCCTCGGTGTTGAT 27044
Query 83222 GCCCAGTTCGCC---CAGGCGCTTCTTCAGCCAGCGGTTCTTGACGGCGAACGAGCCCGA 83278
|||| ||| | |||||| || ||| || |||||||||| ||||||||||| ||
Sbjct 27045 GCCCTTCTCGTCTAGCAGGCG---CTCCAGATAGGGGTTCTTGACCGCGAACGAGCCGGA 27101
Query 83279 CAGAGTCTTGTGCAGGAAGGTGTTGGCCGGGATCGGCTC 83317
||| ||||||||| || |||||||||||||||||||
Sbjct 27102 CAGGGTCTTGTGCGTATAGATGTTGGCCGGGATCGGCTC 27140
Score = 125 bits (138), Expect = 1e-23
Identities = 202/288 (70%), Gaps = 2/288 (1%)
Strand=Plus/Plus
Query 83514 CTCTCGAACGGGATGTCCAGCATCTGGAGCAGCGAGTGGAAGCCGAGCAGGCCCAGGCCC 83573
|| ||||| | || | || | ||| || | ||||||||||| | ||||||||| |||
Sbjct 27384 CTTTCGAAGGCGACGCCCTGACCCTGCAGGAAGGAGTGGAAGCCCATCAGGCCCAGACCC 27443
Query 83574 ACCGACCGTTCGCGCACGGCGCTGTAGGCGGC-GCGGTGCATCTCGTCCGGCGCGTTGTC 83632
||||| ||||||||| ||| ||| | || || | ||| |||| |||||| |
Sbjct 27444 ACCGAACGTTCGCGCTTGGCCGAATAGACAGCTGCCGA-CATGGCGTCGGGCGCGCGCTG 27502
Query 83633 GATGAACACCTGGAGGCAGTTGTCCAGCATGCGCAGCAGGTCTTCGATGAAGGTCGGGTG 83692
|||||| ||| || |||||||| | |||| |||||| ||||||||| || |
Sbjct 27503 GATGAAGTCCTCCAGCACATTGTCCAGGAACCGCATCAGGTCCTCGATGAAGCGGGGCTC 27562
Query 83693 ATCCCGCCACTCCGGCCACTTCTCGGCGTTGACGCTGGAAAGGCAGCAGACGGCGGTCCG 83752
|| ||||||||| | | ||||||| |||||| || ||||||||||||||||| ||
Sbjct 27563 CTCGCGCCACTCCAGGAAGGTCTCGGCATTGACGGACGACAGGCAGCAGACGGCGGTGCG 27622
Query 83753 CATCTTGCCGAAGATGTCGCGGCCCGAGCCCAGCATGATCTCCGAGCA 83800
| ||| | | ||| ||| | | ||||||||| || | |||
Sbjct 27623 GTCCACGCCCAGGTGGTCCTTGCCGGTGTGCAGCATGATTTCGGCGCA 27670
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 700429092525360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |