Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_019408.1 Length=223720 Score E Sequences producing significant alignments: (Bits) Value seq1012 131 2e-25 >seq1012 Length=28740 Score = 131 bits (144), Expect = 2e-25 Identities = 397/599 (66%), Gaps = 27/599 (5%) Strand=Plus/Plus Query 86106 CGCAGAGGTTCGACTGGCGAACGCTCAGGCCAAGCTTCTTCTGCCGGTCCGGGAAGTGGC 86165 |||| ||||||||||| || ||||||| || | ||| | || | |||| Sbjct 27667 CGCACAGGTTCGACTGTTTGACCTTCAGGCCCAGGTCACGCTGGTGCGGCGCCATCTGGC 27726 Query 86166 GGTTGGAGGTGTCGATGAAGTGGATGTAGGGCTCGCCCGTCTGCACGCGCGTCTCGATCA 86225 |||| |||||| |||| | ||||||||||| ||||||| ||| | |||| || Sbjct 27727 GGTTCACCGTGTCGGAGAAGATCAGATAGGGCTCGCCGGTCTGCATGCGGATGTCGAGCA 27786 Query 86226 GCAGGCGCCACAGGTCGCGCGCCCGTTCCATGCGGATCA---CCTCGCCCGTCTTGGGCG 86282 || | |||||| || ||| ||| | | | ||| | ||||| |||||||| Sbjct 27787 GCTTGGTCCACAG--CGAGCGGGCGT-CGACGGTCTTCAAGACTTCGCCGTCCTTGGGCG 27843 Query 86283 AGCGCAGGGCGAAGTCGGTGTCGTCGCGCACCGCGATCATGAACTCGTCGGTGACGTTGA 86342 | |||| ||||| | | | | |||||| ||||||||||||||||||||||| Sbjct 27844 ATTTCAGGTCGAAGGTCGCGCCAACCTTCACCGCTTCCATGAACTCGTCGGTGACGTTGA 27903 Query 86343 CCGCATTGTGCAGGTTGGTGATCTTGCGGTTGTGGTCCCCGCCCGTCGGCTTGCGCGCGG 86402 | | |||||||| | |||||||||| || |||||| || ||||| | Sbjct 27904 TGCCGTGATGCAGGTTCAGGGACTTGCGGTTGAAGT---CGCCCGAAGGTTTGCG-GATC 27959 Query 86403 TGATG-AACTCGCGGATTTCGGGGTGGTGGATGTCCAGGTAGACGGCGTTGGAGCCCCGG 86461 | | | ||||| ||| || ||||| |||||||| ||||| || ||| || || ||| Sbjct 27960 TCAAGAAACTCCTCGATCTCCGGGTGATGGATGTCGAGGTACACAGCGGCCGAACCACGG 28019 Query 86462 CGCGTACCGCCCTGGCTGACGGCCAGGATCAGGCGGTCGTCCACCGCCATGAACGGGATG 86521 ||| ||| || | |||||| |||| ||| ||| ||||| |||||| Sbjct 28020 CGCAGCGAGCCTTGCGAAATCGCCAGGGTCAGTGAGTCCATCACGCGGATGAAGGGGATG 28079 Query 86522 ACGCC---GGTC--GACTGCGAACCCTTGGAGGTCTTCTCGCCCAGGCCGCGCAGGGCGC 86576 | ||| |||| | | ||| ||||| ||| ||||| | | ||| | | ||| Sbjct 28080 ATGCCCGAGGTCTTGCCCGCG--CCCTT---CACCTTTTCGCCGATGGAGCGGACGCCGC 28134 Query 86577 CGTAATAGGAGCCGATGCCGCCGCCCATCGACGACAGCCAGATGACCTCGT--CATA-GT 86633 | | |||| ||||||||||||||| | |||| |||| | | | |||| || | || Sbjct 28135 CCCAGTAGGTGCCGATGCCGCCGCCGTTGGACGCCAGCGATACGTTTTCGTTCCAGACGT 28194 Query 86634 GCTCGGAGATCGACTCGCGGCTGTCCTCGATCGCGGTGAGGAAGCAGGAGATCGGCAGG 86692 || ||| || || | ||||| || ||| | ||||||||||||||||||||| Sbjct 28195 TCT-GGATGCCG--TCCAGACTGTCGCTGACGGCGTTCAGGAAGCAGGAGATCGGCAGG 28250 Score = 118 bits (130), Expect = 2e-21 Identities = 239/350 (68%), Gaps = 10/350 (3%) Strand=Plus/Plus Query 84838 GTCGGCCTTGCGGCGCATGTGGCGGAAGATGGTCTTATTGAGCGTCTCGGCCGCCATGCT 84897 |||||||| |||||||| || ||| | | | | || || || |||| ||| Sbjct 27326 GTCGGCCTCGCGGCGCAGATGCTTGAACAGGCGCATGTTCCACGACTTGGCCATGGCGCT 27385 Query 84898 CTCGAACGGGATGTCGAGCGACTGGAGCAGCGAGTGGAAGCCCAGCAGGCCCAGGCCCAC 84957 ||||| | || | | | ||| || | ||||||||||||| ||||||||| ||||| Sbjct 27386 TTCGAAGGCGACGCCCTGACCCTGCAGGAAGGAGTGGAAGCCCATCAGGCCCAGACCCAC 27445 Query 84958 CGAGCGCTCGCGCACGGCGCTGTAGGAGGC--CCGGTGCATCTCGTCCGGCGCGTTGTCG 85015 ||| || |||||| ||| ||| || ||| ||| |||| |||||| | | Sbjct 27446 CGAACGTTCGCGCTTGGCCGAATAGACAGCTGCCG--ACATGGCGTCGGGCGCGCGCTGG 27503 Query 85016 ATGAACACCTGGAGGCAGTTGTCCAGCATGCGCATCAGGTCTTCGATGAAGGTCGGGTGA 85075 ||||| ||| || |||||||| | ||||||||||| ||||||||| |||| | Sbjct 27504 ATGAAGTCCTCCAGCACATTGTCCAGGAACCGCATCAGGTCCTCGATGAAG--CGGG-GC 27560 Query 85076 TCCT---TCCATTCGACCCACTTTTCGGCGTTGACGCTCGACAGGCAGCAGACGGCCGTG 85132 |||| ||| || | | | ||||| |||||| |||||||||||||||||| ||| Sbjct 27561 TCCTCGCGCCACTCCAGGAAGGTCTCGGCATTGACGGACGACAGGCAGCAGACGGCGGTG 27620 Query 85133 CGCATCTTGCCGAACACGTCGCGGCCGGTGCCCAGCATGATCTCCGAGCA 85182 || | ||| | ||| ||||||| ||||||||| || | ||| Sbjct 27621 CGGTCCACGCCCAGGTGGTCCTTGCCGGTGTGCAGCATGATTTCGGCGCA 27670 Score = 93.3 bits (102), Expect = 6e-14 Identities = 220/338 (65%), Gaps = 41/338 (12%) Strand=Plus/Plus Query 84363 TGGCGTCGTGCGGGTGGAAGACGTTCAGGGACTGGCCCTGGCAGATGTCCTCCGTCCGCC 84422 || ||||| ||| ||| | |||||| |||||| |||||||||| ||| || || Sbjct 26843 TGACGTCGCCGGGGATGAACAGGTTCAGCGACTGGGCCTGGCAGATTTCCGGCGCGCGGT 26902 Query 84423 CGACGGCCAGCCGCACGACCCAGCGCTGGTCGAGTTCCATCGCCGTCTTGTAGACGCGCT 84482 || ||||||| || |||||||||||||| ||||| | || |||||| | |||| || Sbjct 26903 CGGCGGCCAGTTCGACCACCCAGCGCTGGTCCAGTTCGAAGGCGGTCTTGAACACGCCCT 26962 Query 84483 TCTTGTGGTCCAGGACCGCCGGGTCGACTTCGATGCCCAGGGCCTCGAAGAACTCGACCG 84542 || ||| ||||| | |||| | || Sbjct 26963 TC---------------------TCGTCTTCGTT---CAGGTCGTC-------------- 26984 Query 84543 AGAAGTGCTGGATCGAGCCCTCGTTGGCGACGATGGTCTTCCAGACCTCATCGGTGTCGG 84602 || |||||||| ||| || |||| | | ||| | ||||||||| | ||||||| | Sbjct 26985 -GATGTGCTGGACCGAACCTTCGTGCTCCAGGATCGAGTTCCAGACCGCCTCGGTGTTGA 27043 Query 84603 CGCCCAGGCTCGCCAGCCACGCGC-GCAGCCAGCGGTTCTTGACCTGGAACGAACCCGAG 84661 |||| |||| | || |||| ||| || ||||||||||| |||||| || || Sbjct 27044 TGCCC-TTCTCGTCTAGCAGGCGCTCCAGATAGGGGTTCTTGACCGCGAACGAGCCGGAC 27102 Query 84662 AGGGTCTTGTGCAGGAAGGTGTTGGCGCGGTTGGGCTC 84699 |||||||||||| || ||||||| || | ||||| Sbjct 27103 AGGGTCTTGTGCGTATAGATGTTGGCCGGGATCGGCTC 27140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715759948723200