Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_019411.1 Length=219216 Score E Sequences producing significant alignments: (Bits) Value seq1012 140 5e-28 >seq1012 Length=28740 Score = 140 bits (154), Expect = 5e-28 Identities = 403/604 (67%), Gaps = 37/604 (6%) Strand=Plus/Plus Query 85284 CGCAGAGGTTCGACTGGCGGACCTTGAGGCCGAGCTT---CTTCTGCGCCTCGGGGAAGT 85340 |||| ||||||||||| |||||| ||||| || | || |||| | | | | Sbjct 27667 CGCACAGGTTCGACTGTTTGACCTTCAGGCCCAGGTCACGCTGGTGCGGCGCC---ATCT 27723 Query 85341 GGCGGTTGGAGGTGTCGATGAAGTGGATGTAGGGCTCGCCCGTCTGCATCCGCGTCTCGA 85400 ||||||| |||||| |||| | ||||||||||| |||||||| || | |||| Sbjct 27724 GGCGGTTCACCGTGTCGGAGAAGATCAGATAGGGCTCGCCGGTCTGCATGCGGATGTCGA 27783 Query 85401 TCAGCAGGCGCCACAGTTCGCGCGCCCGCTCGACGCGGATCA---CCTCGCCGGTCTTGG 85457 |||| | |||||| || ||| || |||||| ||| | |||||| ||||| Sbjct 27784 GCAGCTTGGTCCACAG--CGAGCGGGCG-TCGACGGTCTTCAAGACTTCGCCGTCCTTGG 27840 Query 85458 GCGAGCGCAGGGCGAACTCGGTGTCGTCGCGCACCGCGATCATGAACTCGTCGGTGACGT 85517 |||| |||| |||| | | | | |||||| |||||||||||||||||||| Sbjct 27841 GCGATTTCAGGTCGAAGGTCGCGCCAACCTTCACCGCTTCCATGAACTCGTCGGTGACGT 27900 Query 85518 TGACGGCGTTGTGCAGGTTGGTGATCTTGCGGTTCTGGTCGCCGCCGGTAGGCTTGCGGG 85577 ||| | ||| |||||||| | ||||||||| | | |||| | ||| |||||| Sbjct 27901 TGATGCCGTGATGCAGGTTCAGGGACTTGCGGTT---GAAGTCGCCCGAAGGTTTGCGGA 27957 Query 85578 CCGTGATGAACTCGCGGATTTCCGGGTGGCTGATGTCCAGATAGACGGCGTTGGAGCCCC 85637 | | ||||| ||| |||||||| |||||| || || || ||| || || | Sbjct 27958 TCTCAAGAAACTCCTCGATCTCCGGGTGATGGATGTCGAGGTACACAGCGGCCGAACCAC 28017 Query 85638 GGCGCGTGCCGCCTTGGCTGACGGCGAGAATCAGGCGATCGTCCACCGC---CATGAACG 85694 ||||| |||||| | || || ||| | || ||||| | | ||||| | Sbjct 28018 GGCGCAGCGAGCCTTGCGAAATCGCCAGGGTCA-GTGA--GTCCATCACGCGGATGAAGG 28074 Query 85695 GGATCACGCC---GGTC--GACTGCGAACCCTTCGAGGTCTTCTCGCCCAGGCCGCGCAG 85749 |||| | ||| |||| | | ||| |||||| ||| ||||| | | ||| | Sbjct 28075 GGATGATGCCCGAGGTCTTGCCCGCG--CCCTTC---ACCTTTTCGCCGATGGAGCGGAC 28129 Query 85750 GGCGCCGTAGTAGGAGCCGATGCCGCCGCCCATCGACGAGAGCCAGATGACCTCGT--CA 85807 | |||| |||||| ||||||||||||||| | |||| ||| | | | |||| || Sbjct 28130 GCCGCCCCAGTAGGTGCCGATGCCGCCGCCGTTGGACGCCAGCGATACGTTTTCGTTCCA 28189 Query 85808 TA-GTGCTCGGAGATCGACTCGCGGCTGTCCTCGATCGCGGTGAGGAAGCAGGAGATCGG 85866 | || || ||| || || | ||||| || ||| | ||||||||||||||||| Sbjct 28190 GACGTTCT-GGATGCCG--TCCAGACTGTCGCTGACGGCGTTCAGGAAGCAGGAGATCGG 28246 Query 85867 CAGG 85870 |||| Sbjct 28247 CAGG 28250 Score = 131 bits (144), Expect = 2e-25 Identities = 125/159 (79%), Gaps = 6/159 (4%) Strand=Plus/Plus Query 83728 GAAGTGCTGGATCGACCCCTCGGCCGCGACGATCGACTTCCAGACCGCCTCGGTGTCCAG 83787 || |||||||| ||| || ||| | | | |||||| ||||||||||||||||||| | Sbjct 26985 GATGTGCTGGACCGAACCTTCGTGCTCCAGGATCGAGTTCCAGACCGCCTCGGTGTTGAT 27044 Query 83788 GCCCAGTTCGCC---CAGGCGCTTCTTCAGCCAGCGGTTCTTGACGGCGAACGAGCCCGA 83844 |||| ||| | |||||| || ||| || |||||||||| ||||||||||| || Sbjct 27045 GCCCTTCTCGTCTAGCAGGCG---CTCCAGATAGGGGTTCTTGACCGCGAACGAGCCGGA 27101 Query 83845 CAGGGTCTTGTGCAGGAAGGTGTTGGCCGGGATCGGCTC 83883 ||||||||||||| || ||||||||||||||||||| Sbjct 27102 CAGGGTCTTGTGCGTATAGATGTTGGCCGGGATCGGCTC 27140 Score = 125 bits (138), Expect = 1e-23 Identities = 202/288 (70%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 84080 CTCTCGAACGGGATGTCCAGCATCTGGAGCAGCGAGTGGAAGCCGAGCAGGCCCAGGCCC 84139 || ||||| | || | || | ||| || | ||||||||||| | ||||||||| ||| Sbjct 27384 CTTTCGAAGGCGACGCCCTGACCCTGCAGGAAGGAGTGGAAGCCCATCAGGCCCAGACCC 27443 Query 84140 ACCGACCGTTCGCGCACGGCGCTGTAGGCGGC-GCGGTGCATCTCGTCCGGCGCGTTGTC 84198 ||||| ||||||||| ||| ||| | || || | ||| |||| |||||| | Sbjct 27444 ACCGAACGTTCGCGCTTGGCCGAATAGACAGCTGCCGA-CATGGCGTCGGGCGCGCGCTG 27502 Query 84199 GATGAACACCTGGAGGCAGTTGTCCAGCATGCGCAGCAGGTCTTCGATGAAGGTCGGGTG 84258 |||||| ||| || |||||||| | |||| |||||| ||||||||| || | Sbjct 27503 GATGAAGTCCTCCAGCACATTGTCCAGGAACCGCATCAGGTCCTCGATGAAGCGGGGCTC 27562 Query 84259 ATCCCGCCACTCCGGCCACTTCTCGGCGTTGACGCTGGAGAGGCAGCAGACGGCGGTCCG 84318 || ||||||||| | | ||||||| |||||| || ||||||||||||||||| || Sbjct 27563 CTCGCGCCACTCCAGGAAGGTCTCGGCATTGACGGACGACAGGCAGCAGACGGCGGTGCG 27622 Query 84319 CATCTTGCCGAAGATGTCGCGGCCCGAGCCCAGCATGATCTCCGAGCA 84366 | ||| | | ||| ||| | | ||||||||| || | ||| Sbjct 27623 GTCCACGCCCAGGTGGTCCTTGCCGGTGTGCAGCATGATTTCGGCGCA 27670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 701347471930240