Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_019442.1
Length=60523
Score E
Sequences producing significant alignments: (Bits) Value
seq997 293 9e-75
>seq997
Length=29618
Score = 293 bits (324), Expect = 9e-75
Identities = 371/508 (73%), Gaps = 13/508 (3%)
Strand=Plus/Minus
Query 29055 CTGCCGTTCTGGCGCTG--ATTGCCGCAGGTGCTTCTGCGCCTGAAATCCTCGACCAGTT 29112
|||| ||||||| |||| |||| || |||||| |||| | | ||| ||||| |||||
Sbjct 20900 CTGCAGTTCTGGGGCTGGTATTG--GCTGGTGCTCCTGCATCCGTAATTCTCGATCAGTT 20843
Query 29113 TCTGGATGAAAAGGAAGGCAACCACACCACGGCATACCGTGATGGTGCGGGTATCTGGAC 29172
|||| ||||||| || || ||| | |||||| ||| ||||||| ||||| |||||
Sbjct 20842 TCTGAATGAAAAAGAGGGTAACAGCCTCACGGCCTACAAAGATGGTGGTGGTATTTGGAC 20783
Query 29173 CATCTGCCGTGGAGCCACCCGGGTGGATGGTAAGCCTGTTATTCCTGGCATGAAGCTGTC 29232
|| ||||| || || || ||| ||| |||| || ||| | | |||||||| || |
Sbjct 20782 TATTTGCCGCGGCGCAACGATGGTTGATCGTAAACCGGTTGTGCAGGGCATGAAATTGAC 20723
Query 29233 GAAGGGGAAATGCGACCAGGTTAACGCCATTGAGCGTGATAAGGCGCTGGCATGGGTGGA 29292
||| |||||| | | ||| || || || || || ||||||| ||||||||||| ||
Sbjct 20722 ACAGGCCAAATGCAATCTGGTGAATGCTATCGAACGCAATAAGGCTCTGGCATGGGTTGA 20663
Query 29293 GAAAAACATCAAAGTGCCACTGACTGAACCCCAGAAAGCGGGTATTGCGTCATTCTGTCC 29352
|| || || || || || ||||| |||||||| || || || || ||||||||
Sbjct 20662 CCGCAATATTTCGGTACCGCTTACCGAACCGCAGAAAGCTGGAATCGCATCTTTCTGTCC 20603
Query 29353 TTACAACATTGGCCCAGGTAAGTGTTTCCCGTCGACGTTTTATAAACGAATTAATGCAGG 29412
|||||||| || || |||||||| |||||||| ||||| ||||| || || ||||| ||
Sbjct 20602 GTACAACATCGGGCCGGGTAAGTGCTTCCCGTCAACGTTCTATAAGCGCATCAATGCCGG 20543
Query 29413 AGATCGAAAAGGTGCCTGCGAAGCGATTCGCTGGTGGATTAAGGACGGTGGCAGAGACTG 29472
|| || || || ||||| || |||||||||||||||| |||| |||| | |||||
Sbjct 20542 TGACCGCCCCGGGGCATGCGAGGCAATTCGCTGGTGGATTAGAGACGCTGGCCGCGACTG 20483
Query 29473 CCG------TATTCGCTCAAATAA---CTGTTATGGTCAGGTCTCACGGCGTGACCAGGA 29523
||| || || || || ||| || |||||||| |||||| ||||||||
Sbjct 20482 CCGCCTGACTAAAGGCCAGAAGAACGGCTGCTACGGTCAGGTAGAACGGCGAGACCAGGA 20423
Query 29524 GAGCGCGCTGGCGTGCTGGGGAATTGAC 29551
|| || ||||||||||||| || |||
Sbjct 20422 AAGTGCTTTGGCGTGCTGGGGGATAGAC 20395
Score = 158 bits (174), Expect = 5e-34
Identities = 239/336 (71%), Gaps = 18/336 (5%)
Strand=Plus/Minus
Query 29925 AATCATTACCGCGATAACGCCATCACCTACAAAGCGCAGCGCGATAAAAAAGTCAGTGAG 29984
|| || || ||||| ||||||||||||||||||| ||||||||||||| | || ||||
Sbjct 18185 AACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGATAAA---GCCACTGAG 18129
Query 29985 ---CTGGAGCTGGCAAATGCAACCATTACTGATATGCAGCAGCGCCAGCGTGATGTTGCT 30041
|| | ||| || || ||||| | || |||||| ||||||||||||| |||
Sbjct 18128 AAACTCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGATGCCGCT 18069
Query 30042 GCACTTGATGCCAGATACTCGAGGGAATTAGCCGATGCGAGAGCTGAAAATGAAACTCTT 30101
|| || ||||||| |||| | | ||| || ||||||| || | | ||| |||
Sbjct 18068 GCGCTGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAGATATCATTGAGCGTCTG 18009
Query 30102 C---GCGCTGACGTTGCCGCTGGTTACCGCAGCCTGCGGATCAACGCCACCTGTCCAGGT 30158
| ||| || | |||| | || | || |||| | ||||||| | |||||| |
Sbjct 18008 CATAGCGATGTCATTGCTGGCCGTAAGCGG---CTGCAGCTCAACGCAAACTGTCCCG-- 17954
Query 30159 CCCGTGCGTGAAGCCACCGGCACCGCCCGCGTGGATAATGCAACCGGCCCCCGACTGGCA 30218
|| || ||| |||||||||| | || ||| |||| |||||||| |||| |
Sbjct 17953 --CGAACGG--AGCGACCGGCACCGGCGGCATGGGCGATGCTTCCGGCCCCAGACTTACT 17898
Query 30219 GACACCGCTGAACGGGATTATTTCACCCTCAGAGAG 30254
||| ||||||||||||||||||||| ||||||| ||
Sbjct 17897 GACTCCGCTGAACGGGATTATTTCATCCTCAGAAAG 17862
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 193547876616580
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |