Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_019442.1 Length=60523 Score E Sequences producing significant alignments: (Bits) Value seq997 293 9e-75 >seq997 Length=29618 Score = 293 bits (324), Expect = 9e-75 Identities = 371/508 (73%), Gaps = 13/508 (3%) Strand=Plus/Minus Query 29055 CTGCCGTTCTGGCGCTG--ATTGCCGCAGGTGCTTCTGCGCCTGAAATCCTCGACCAGTT 29112 |||| ||||||| |||| |||| || |||||| |||| | | ||| ||||| ||||| Sbjct 20900 CTGCAGTTCTGGGGCTGGTATTG--GCTGGTGCTCCTGCATCCGTAATTCTCGATCAGTT 20843 Query 29113 TCTGGATGAAAAGGAAGGCAACCACACCACGGCATACCGTGATGGTGCGGGTATCTGGAC 29172 |||| ||||||| || || ||| | |||||| ||| ||||||| ||||| ||||| Sbjct 20842 TCTGAATGAAAAAGAGGGTAACAGCCTCACGGCCTACAAAGATGGTGGTGGTATTTGGAC 20783 Query 29173 CATCTGCCGTGGAGCCACCCGGGTGGATGGTAAGCCTGTTATTCCTGGCATGAAGCTGTC 29232 || ||||| || || || ||| ||| |||| || ||| | | |||||||| || | Sbjct 20782 TATTTGCCGCGGCGCAACGATGGTTGATCGTAAACCGGTTGTGCAGGGCATGAAATTGAC 20723 Query 29233 GAAGGGGAAATGCGACCAGGTTAACGCCATTGAGCGTGATAAGGCGCTGGCATGGGTGGA 29292 ||| |||||| | | ||| || || || || || ||||||| ||||||||||| || Sbjct 20722 ACAGGCCAAATGCAATCTGGTGAATGCTATCGAACGCAATAAGGCTCTGGCATGGGTTGA 20663 Query 29293 GAAAAACATCAAAGTGCCACTGACTGAACCCCAGAAAGCGGGTATTGCGTCATTCTGTCC 29352 || || || || || || ||||| |||||||| || || || || |||||||| Sbjct 20662 CCGCAATATTTCGGTACCGCTTACCGAACCGCAGAAAGCTGGAATCGCATCTTTCTGTCC 20603 Query 29353 TTACAACATTGGCCCAGGTAAGTGTTTCCCGTCGACGTTTTATAAACGAATTAATGCAGG 29412 |||||||| || || |||||||| |||||||| ||||| ||||| || || ||||| || Sbjct 20602 GTACAACATCGGGCCGGGTAAGTGCTTCCCGTCAACGTTCTATAAGCGCATCAATGCCGG 20543 Query 29413 AGATCGAAAAGGTGCCTGCGAAGCGATTCGCTGGTGGATTAAGGACGGTGGCAGAGACTG 29472 || || || || ||||| || |||||||||||||||| |||| |||| | ||||| Sbjct 20542 TGACCGCCCCGGGGCATGCGAGGCAATTCGCTGGTGGATTAGAGACGCTGGCCGCGACTG 20483 Query 29473 CCG------TATTCGCTCAAATAA---CTGTTATGGTCAGGTCTCACGGCGTGACCAGGA 29523 ||| || || || || ||| || |||||||| |||||| |||||||| Sbjct 20482 CCGCCTGACTAAAGGCCAGAAGAACGGCTGCTACGGTCAGGTAGAACGGCGAGACCAGGA 20423 Query 29524 GAGCGCGCTGGCGTGCTGGGGAATTGAC 29551 || || ||||||||||||| || ||| Sbjct 20422 AAGTGCTTTGGCGTGCTGGGGGATAGAC 20395 Score = 158 bits (174), Expect = 5e-34 Identities = 239/336 (71%), Gaps = 18/336 (5%) Strand=Plus/Minus Query 29925 AATCATTACCGCGATAACGCCATCACCTACAAAGCGCAGCGCGATAAAAAAGTCAGTGAG 29984 || || || ||||| ||||||||||||||||||| ||||||||||||| | || |||| Sbjct 18185 AACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGATAAA---GCCACTGAG 18129 Query 29985 ---CTGGAGCTGGCAAATGCAACCATTACTGATATGCAGCAGCGCCAGCGTGATGTTGCT 30041 || | ||| || || ||||| | || |||||| ||||||||||||| ||| Sbjct 18128 AAACTCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGATGCCGCT 18069 Query 30042 GCACTTGATGCCAGATACTCGAGGGAATTAGCCGATGCGAGAGCTGAAAATGAAACTCTT 30101 || || ||||||| |||| | | ||| || ||||||| || | | ||| ||| Sbjct 18068 GCGCTGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAGATATCATTGAGCGTCTG 18009 Query 30102 C---GCGCTGACGTTGCCGCTGGTTACCGCAGCCTGCGGATCAACGCCACCTGTCCAGGT 30158 | ||| || | |||| | || | || |||| | ||||||| | |||||| | Sbjct 18008 CATAGCGATGTCATTGCTGGCCGTAAGCGG---CTGCAGCTCAACGCAAACTGTCCCG-- 17954 Query 30159 CCCGTGCGTGAAGCCACCGGCACCGCCCGCGTGGATAATGCAACCGGCCCCCGACTGGCA 30218 || || ||| |||||||||| | || ||| |||| |||||||| |||| | Sbjct 17953 --CGAACGG--AGCGACCGGCACCGGCGGCATGGGCGATGCTTCCGGCCCCAGACTTACT 17898 Query 30219 GACACCGCTGAACGGGATTATTTCACCCTCAGAGAG 30254 ||| ||||||||||||||||||||| ||||||| || Sbjct 17897 GACTCCGCTGAACGGGATTATTTCATCCTCAGAAAG 17862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193547876616580