Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_019445.1 Length=44784 Score E Sequences producing significant alignments: (Bits) Value seq977 168 2e-37 seq955 84.2 6e-12 seq952 84.2 6e-12 >seq977 Length=30988 Score = 168 bits (186), Expect = 2e-37 Identities = 210/288 (73%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 44496 GCGCTGCGACTGAATACAGAATCGCACCAGGAGCGCATTACCGCACTGGATAGCCATCTC 44555 ||| |||| || || | |||||||||||| |||| ||| ||| ||||| ||| || Sbjct 1897 GCGGTGCGGCTCAACGCGGAATCGCACCAGCAGCGGATTGACGCCCTGGACGAGCATATC 1956 Query 44556 AAGCAATTTCGTTTCTTTTGGGATGGCATGCCGATGCAACCGCAGATTGGCGTCAGTTAC 44615 ||||| || || || | ||||| ||||||||| |||| | |||| ||||||| || ||| Sbjct 1957 AAGCAGTTCCGCTTTGTCTGGGACGGCATGCCGCTGCAGCAGCAGGTTGGCGTAAGCTAC 2016 Query 44616 TGCTATGTGCGCTCGCCAGTGAATCATATCTACCTGCTGCTGGGAGAGCTAAATACGGTC 44675 |||||||| || || || || || ||| | || ||| ||||||| ||||| ||| Sbjct 2017 TGCTATGTCCGGTCCCCGGTTAACCATCTTTATCTGGTGCTGGGGGAGCTGGCGGTGGTG 2076 Query 44676 GCCGAACTTTCCATCGTGACCAACGCCCCGGAAAATATGCAGCGTCGCGGGGCAATGTAT 44735 ||||| || || || | || |||||||||| | |||| ||||| || | || Sbjct 2077 GCCGATCTGTCACTCTCCTCTAATCACCCGGAAAATCTTCAGCAGCGCGGTGCCGTCCAT 2136 Query 44736 TTGCAACGCGAATTGAAAGATAAAGTCGCGATGATGAATCGACTACAG 44783 ||||| ||| |||| ||||||||||||||||||| || || ||| Sbjct 2137 TTGCAGCGCAGCCTGAAGGATAAAGTCGCGATGATGAGCCGCCTGCAG 2184 Score = 140 bits (154), Expect = 9e-29 Identities = 245/348 (70%), Gaps = 14/348 (4%) Strand=Plus/Plus Query 42756 CGGTGATTCGACGGAGAGTGTGGATTGCTGAGCTTCTTTTTTGCTCTGATGGTGCTGCCA 42815 ||||| ||||||| || |||||||||| | | ||||| ||||||||| | ||| Sbjct 88 CGGTG--TCGACGGTCAGGCTGGATTGCTGTGACTGGGTTTTGTCCTGATGGTGGTACCA 145 Query 42816 GGCACCGACGGACGAGTAGATAAAACGGCCAAAGAAGAAGATAAAGCTGATGAGCAGTAC 42875 ||| || | || ||||| | || ||||||||||| || | || ||||| ||||||| Sbjct 146 GGCGCCAATCGAAGAGTAAACGAAGCGGCCAAAGAAAAACAGGAAACTGATAAGCAGTAT 205 Query 42876 GATACGGGTCATGCGACTGTTAAATCGGTGTCGTTTTCGCATACTGGTTGCCTGACTCAC 42935 ||| |||||||| || |||||||||| |||||||| ||||||| || |||||||||| Sbjct 206 GATGCGGGTCATTCGGGTGTTAAATCGATGTCGTTTGCGCATACGCGTGACCTGACTCAC 265 Query 42936 AAAAGGTTCCTTGAAGTATGTCCCAAGCTGTGGACGGTACTTGCATTAAGGCACAACAGG 42995 || | || | || | ||| | || || || ||||||||||| | || Sbjct 266 TCTGTTTTTCCTGGA-TAAG-CCCTCCC---GGGCGATAAGGATATTAAGGCACAGCGGG 320 Query 42996 ACAAAATGGTCAATTCTTCGTTATGTAAAAAAGCGTCAGTGGATACATATTTTAATGTTA 43055 | | |||||||||| | | |||||| || ||||| | | ||| || ||||| Sbjct 321 AAGATGGGGTCAATTCTGTGATGTGTAAATAACCGTCAACGTTTGCATTAACTATTGTTA 380 Query 43056 TGGAAGTTAATTTAATT--ATTTACAATGATGATGTAATAATGATGAA 43101 | ||| |||| ||||| |||||| || ||| |||| |||| ||| Sbjct 381 TTGAAATTAA--TAATTGCATTTACCATATTGA--TAAT-ATGAAGAA 423 Score = 116 bits (128), Expect = 1e-21 Identities = 304/454 (67%), Gaps = 16/454 (4%) Strand=Plus/Plus Query 43977 CCGTTAAATGAAAAAAGCACAATTTTTAGCACCAATTATACCTTGTCATTATTGCTGCCC 44036 ||| |||||||||| ||| | || || | ||| || |||||| |||| | || |||| Sbjct 1314 CCGATAAATGAAAACAGCTCCATCTTCACCACTAACTATACCCTGTCGCTGCTGATGCCG 1373 Query 44037 CTGATGATGTGGGGAGCGATGCGCTATGGTTATAAGCTGATTTCTCTGCTCTGG---GCG 44093 ||||| | ||||| |||||||| | ||| |||||||||||||| ||| ||||| || Sbjct 1374 GTGATGCTCTGGGGCGCGATGCGTTTTGGCTATAAGCTGATTTCGCTGATCTGGACCCCG 1433 Query 44094 GTCGTGTTGATGATCAGCATCCACAGCTATCAAAATTACATTCCCATTTATC-CTGGCTA 44152 | || || || || ||| ||| | | | || | ||||| | | | | || || Sbjct 1434 ATACTGCTGGTG-TC--CATTCACTATTTTTACCGCTATA-TCCCAGTGAACGCGGGGTA 1489 Query 44153 TACCACGCAGCTGACCATAACCTCCTCCAGTTATCTGGTATTCTCTTTTATTGTCAATTA 44212 | |||||| | || ||||| |||||||| ||||| || || ||| | || | ||| Sbjct 1490 CGATATTCAGCTGGCGATCACCTCTTCCAGTTACCTGGTCTTTTCGTTTGTGGTGATTTA 1549 Query 44213 TATGGCTGTACTGGCAACCCGTCAGAGAGCGGTAGTCAGACGCATTCAGCGGCTTGCGTA 44272 |||| | | ||||| ||||| ||| | ||||| || || | | |||| || Sbjct 1550 TATGTCGATGCTGGCGACCCGGCAGCGCGCGGTGAACAAACACGCCCGCAGGCTGGCACT 1609 Query 44273 TGTGGACCCGGTGGTTCATCTGCCAAATGTTCGCGCCCTGAATCGCGCG---TTGCG-TG 44328 | || ||||| || ||| |||| || | || || ||| ||||||| | ||| | Sbjct 1610 GCTCGATCCGGTTGTCCATATGCCTAACCTGCGGGCGCTG--TCGCGCGATCTGGCGAAG 1667 Query 44329 ATGCCCTCTGGTCTGCGCTTTGTTATTTACGCATCCCTGGCATGGAAATGCTGGTTAAGA 44388 | || ||||| ||||| || | ||||| || | ||||||| |||| | Sbjct 1668 AATCC--GTGGTCGGCGCTATGCCTGCTGCGCATTCCGGAGCTGGAAATTCTGGGCCGAA 1725 Query 44389 ACTATGGCATCATGCTGCGGATTCAATACAAGCA 44422 | || ||| | |||||| ||||| ||||| || Sbjct 1726 ATTACGGCGTGCAGCTGCGTATTCAGTACAAACA 1759 >seq955 Length=33606 Score = 84.2 bits (92), Expect = 6e-12 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 14430 TGCAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTGTCCAACTGAGCTA 14489 || ||||||||||||| ||||| || ||||||||||| |||||||| ||||||||||||| Sbjct 1438 TGTAGGATTCGAACCTACGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAACTGAGCTA 1497 Query 14490 A 14490 | Sbjct 1498 A 1498 >seq952 Length=33737 Score = 84.2 bits (92), Expect = 6e-12 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 14430 TGCAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTGTCCAACTGAGCTA 14489 || ||||||||||||| ||||| || ||||||||||| |||||||| ||||||||||||| Sbjct 12077 TGTAGGATTCGAACCTACGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAACTGAGCTA 12136 Query 14490 A 14490 | Sbjct 12137 A 12137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143184149575688