Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_019488.1 Length=34117 Score E Sequences producing significant alignments: (Bits) Value seq1001 376 5e-100 >seq1001 Length=29257 Score = 376 bits (416), Expect = 5e-100 Identities = 917/1372 (67%), Gaps = 77/1372 (6%) Strand=Plus/Plus Query 27137 GAAATCAACGAGGGCACCCGACCTATTACCACGGTGAGCACTGCCATCGTGGGCATGGTC 27196 || || ||||| ||||| || | ||| |||| || || |||||| | ||||||||| Sbjct 6731 GAGATTAACGATGGCACGCGCACCATTTCCACCGTTTCGACGGCCATCATCGGCATGGTC 6790 Query 27197 TGCACCGGCGATGATGCTGATGCGTCCGTGTTCCCCCTCAATAAGCCGGTCCTGCTGACT 27256 ||||| | | |||||||| || |||||| | || ||||||| ||| | | Sbjct 6791 TGCACGGCCAGCGATGCTGACGCAAAGACATTCCCCTTAAACGAGCCGGTACTGATTAAC 6850 Query 27257 GATGTGCTCACCGCCAGCGGTAAAGCGGGGGAGTCCGGCACGCTGGCCCGCTCGCTGGAC 27316 |||| || || | ||||||||| || | ||||||||||| || ||| | Sbjct 6851 AGCGTGCAAACGGCTATCGGTAAAGCCGGTAAAAAAGGCACGCTGGCAAAATCCCTGCAG 6910 Query 27317 GCGATTGCAGATCAGGCAAAACCCGTGACTGTCGTTGTGCGTGTGGCGCAGGGCG----- 27371 || || || || ||| ||||| || | ||| || ||||| || | | || | Sbjct 6911 GCCATCGCCGACCAGTGCAAACCGGTCATTGTGGTGGTGCGCGTTCCAGAAGGTGTCGAC 6970 Query 27372 --------AAACC--GAAGCGG---------AAACCACCTCCAATATTATCGGCGGCGTA 27412 | ||| ||||||| |||||| ||||| || |||||| Sbjct 6971 GACCCGGCAGACCCGGAAGCGGCGCAGAAAGAAACCATTTCCAACATCATCGGC------ 7024 Query 27413 ACTTCCGACGGTAA--GAAAA-----CGGGCATGAAAGCGCTACTGTCGGCGCA----GT 27461 || |||||| || | ||| ||||| |||||||||| | ||||| | || Sbjct 7025 ACGACCGACGAAAACGGCAAATACACCGGGC-TGAAAGCGCTGTTAACGGCGAAAACCGT 7083 Query 27462 CGCAGCTCGGTGTCAAGCCGTGCATTCTTGGGGTGCCGGGACATGACACTCAGGCCGTTG 27521 | | ||| || |||||| ||||||| || |||||||| | || || |||| || | Sbjct 7084 CAC----CGGCGTTAAGCCGCGCATTCTCGGCGTGCCGGGGCTGGATACGCAGGAAGTGG 7139 Query 27522 CTACTGAACT-GC-TGGGCGTGGCGCAAAGCTTGCGCGGGTTTGCCTACCTTGCTGCTAA 27579 | || | || || | | || | | ||| |||||| ||| | |||| | || Sbjct 7140 CGACCGCGCTTGCGTCAACCTGCC--AGAGCCTGCGCGCGTTCGGCTACGTAAGCGCGTG 7197 Query 27580 TGGCTGCAAAACGGTGGAGGAAGCTATTGCCTATCGCGAGAATTTCAGTCAGCGCGAGGG 27639 |||||||| || | || || || || || ||||||||||| ||||||||| Sbjct 7198 GGGCTGCAAGACCATTTCCGACGCCATCAAATACCGTGAGAATTTCAGCCAGCGCGAGCT 7257 Query 27640 AATGCTGATCTGGCCTGACTTCATCAACTTTGACACCGTGCTGAAAGCAGACGCGACGGC 27699 ||| | || |||||||| | | |||||| | ||| | | || | || Sbjct 7258 GATGGTCATTCACCCTGACTTTCTGGCATGGGACACCACGGCGAACGAAACCGATATTGC 7317 Query 27700 TTACGCCTCCGCCCGTGCGCTCGGCCTGCGTGCCAAAATCGACGAGCAGATCGGCTGGCA 27759 | || ||||||| |||||||||||||| |||||||||||| || ||| ||| ||||| Sbjct 7318 ATGGGCGACCGCCCGCGCGCTCGGCCTGCGCGCCAAAATCGACCAGGAGACCGGATGGCA 7377 Query 27760 TAAAACCCTGTCCAATGTGGGTGTGAACGGTGTCACCGGCATTTCCGCTGATGTGTTCTG 27819 ||||| ||||| || || || ||||| || ||||||||| | ||| || | || Sbjct 7378 CAAAACGCTGTCTAACGTTGGCGTGAATGGCGTCACCGGCGTCAGCGCCTCGGTCTCATG 7437 Query 27820 GGATCTGCAGGACCCGGCAACCGATGCGGGACTGCTGAACAAAAATGACGTCACCACATT 27879 |||| ||||||| | ||| ||||| || |||||||| | | || || || | Sbjct 7438 GGATTTGCAGGAGCAGGCTACCGACGCCAACCTGCTGAATCAGGCCGGGGTGACAACGCT 7497 Query 27880 GATCCGCAAAGACGGCTTCCGCTTCTGGGGTTCCCGT---TGTCTCAGTGACGATCCGCT 27936 |||||||| |||||||| |||||||| |||| || ||| |||||||| | Sbjct 7498 AATCCGCAACGACGGCTTTAAGTTCTGGGGCAACCGTACCTG-CTC--GGACGATCCTTT 7554 Query 27937 GTTTGCTTTTGAGAACTACACCCGTACGGCGCAGGTGCTGGCTGACACTATGGCGGAGGC 27996 || | ||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||| Sbjct 7555 ATTCGTGTTTGAAAACTACACCCGCACGGCGCAGGTGCTGGCCGACACGATGGCGGAGGC 7614 Query 27997 GCACATGTGGGCGGTGGA-TGGCGTGCTTAATCCG--TCGCTGGCCCGCGACATTATTGA 28053 |||| ||||||| |||| || | | |||| |||| |||||||||| | | Sbjct 7615 GCACGCGTGGGCGATGGACAAGCCCGTT---TCCGCAACGCTTATCCGCGACATTGTCGC 7671 Query 28054 AGGACTACGCGCCAAGATGCGCAGTCTGGTCAACCAGGGATACCTGATTGGTGGTGACTG 28113 || | ||||| | ||| ||| || | || || | ||| || || Sbjct 7672 CGGTATCAATGCCAAATTCCGCGAGCTGAAAAATAACGGCTATATCGTTGACGGGTCATG 7731 Query 28114 CTGGCTGGA---TGAGTCTGTTAACGATAAAGACGCCCTTAAAGCCGGGAAACTGACCAT 28170 |||| || ||||| ||| || |||| ||||||||||| ||| || Sbjct 7732 CTGGTACGACCCGGAGTC---AAACACCGTGGAAACCCTGAAAGCCGGGAAGCTGTATAT 7788 Query 28171 CGATTATGACTACACGCCGGTGCCTCCGCTTGAAAACCTGATGCTGCGCCAGCGCATCAC 28230 |||||| |||||||| || || || ||||| |||||||||| ||||||||||||||||| Sbjct 7789 CGATTACGACTACACCCCCGTCCCGCCGCTGGAAAACCTGACCCTGCGCCAGCGCATCAC 7848 Query 28231 CGATCGTTACCTGGTCGA-TTTTGCCAGCCGTGTC-GCTGCATAAGGGG----GAATCAT 28284 |||| || |||| || | | || || ||| | || ||||| | ||| ||| Sbjct 7849 CGATACCTATCTGGCTGACCTGTCAGAGTCG-GTCAACAGC-TAAGGAGCTCAGAA-CAT 7905 Query 28285 GGCTTTACCACGCAAGTTAAAACACCTGAACCTGTTCAACGACGGGAACAACTGGCAGGG 28344 ||| ||||||||||| | ||| ||||||| |||| |||||||| || || ||| Sbjct 7906 GGCGTTACCACGCAAACTGAAATACCTGAATATGTTTAACGACGGCCTCAGCTACATGGG 7965 Query 28345 GATCGTTGAGTCTCTGACCCTGCCGAAATTTACCCGCAAGTTTGAGAAGTATCGCGGCGG 28404 ||||||| || | |||||||| || | ||||||||| ||||||| || |||||||| Sbjct 7966 CGTCGTTGAATCCGTCACCCTGCCAAAGCTGACCCGCAAGCTTGAGAAATACCGCGGCGG 8025 Query 28405 CGGTATGCCGGGCGCAGTGGATGTGGACATGGGGCTGGATGACGGTGCACTG 28456 ||| ||||||||| | ||| | ||| | || || || |||| || ||| Sbjct 8026 CGGGATGCCGGGCTCGGTGTCGATTGACCTCGGTCTCGACGACGACGCGCTG 8077 Score = 183 bits (202), Expect = 7e-42 Identities = 448/674 (66%), Gaps = 10/674 (1%) Strand=Plus/Plus Query 22639 CTTTATCCGGGGCCGGAAGCGGAGCCTGTTATGGCGGCGGCAAAAGCCAGCCTGCAGAAG 22698 ||||| || || || ||| |||||||| | || || ||||| | |||||| | Sbjct 3381 CTTTACCCCGGTCCCGAAAGCGAGCCTGTGCTCAGTGCTGCGAAAGCAAAGCTGCAGGCG 3440 Query 22699 TACATCGCCAGTCAGACGAGGCTGGGACGTGATATCCGCCGCAGCGCCATTTATGCCGCG 22758 || ||| || ||| |||| || || ||||||||| ||||||||||||||| Sbjct 3441 TATATCACCGCGCAGCACCGGCTCGGGCGCGATATCCGCAAATCGGCCATTTATGCCGCG 3500 Query 22759 CTGCACGTGGAGGGCGTCCAGCGTGTGGAGCTAACGTCCCCTCTGGAGGATGTGGTGCTG 22818 || || || |||||||| ||||| || ||||| | || ||| || | || || Sbjct 3501 CTCCATGTTGAGGGCGTGCAGCGCGTCGAGCTGGCCGAACCGGTGGCCGACATCGTTCTC 3560 Query 22819 GATAAGACGCAGGCGGCATCCTGTACTGAATGGAGCGTTACCAACGGGGGCACGGATGAA 22878 ||| | || || ||| ||| || | || | ||| |||| ||||||| |||||| Sbjct 3561 GATGACACACAAGCGTCATGGTGCAGCGACTACGCCGTCACCATAGGGGGCAACGATGAA 3620 Query 22879 TAGT------CTGTTGCCGCCGGGTTCGTCGCCGCTTGAGC-GCCGACTGGCGCAGACCT 22931 | | ||| ||||| ||| ||||| ||||||||| | || | ||||| ||| Sbjct 3621 TGATACCCGCCTGCTGCCGGTGGGCTCGTCACCGCTTGAGGTGGCGGC-GGCGCGCGCCT 3679 Query 22932 GCAGCGGGATTTCCGATCTGCAGGTATCGCTGCGTGATTTGTGGAACCCGGCAACCTGCC 22991 || | |||| || | || |||||||| | | |||| || | ||||| Sbjct 3680 GCGCTGAGATTGAAAATACCCCCGTTCCGCTGCGTCGTCTCTGGAGTCCTGACGACTGCC 3739 Query 22992 CGATCAGAT-TCCTGCCTTATCTGGCCTGGGCGTTTTCTGTTGACCGCTGGGATGAGAGC 23050 || || || | ||||| | ||||| ||||||||||| |||||||||||||| |||| | Sbjct 3740 CGG-CAAATCTGCTGCCGTGGCTGGCGTGGGCGTTTTCCGTTGACCGCTGGGACGAGAAC 3798 Query 23051 TGGACAGAAAGCGTCAAGCGCCGCGTTGTGCAGGACGCTTTTTATATCCATCAGCACAAG 23110 ||| | || | ||||| || | | | || | | ||||||| |||||| Sbjct 3799 TGGCCGGAGGCCACAAAGCGGGATGTGATCCGCGCGGCGTGGTTTATCCATGCGCACAAA 3858 Query 23111 GGGACAACCCGCGCCGTGCGGCGCGTGGTGGAGCCGTTCGGCTTCCTGATCCGCATCATT 23170 || || | | || ||||| |||||||||||||| |||||| |||||| | | Sbjct 3859 GGAACGATTGGGGCAGTGCGCCGCGTGGTGGAGCCCCTCGGCTACCTGATTAACGTGTCG 3918 Query 23171 GAGTGGTGGCAGACCGGCGAAACGCCGGGAACGTTCCGTCTGGATATTGGCGTACAGGAT 23230 ||||||||| | ||| ||| | || || ||||| || || ||||| || || || Sbjct 3919 GAGTGGTGGGAAACCAACGACCCACCCGGCACGTTTCGCCTCGATATCGGTGTGTTAGAG 3978 Query 23231 CATGGTATCACCGAAGACACCTATCTGGAGCTTGAGCGCCTGATAAGCGATGCCAAACCA 23290 || |||||||| || | ||| ||| | ||||| || || |||||| || ||| Sbjct 3979 ACCGGCATCACCGAGGAAATGTATTACGAGATGGAGCGGCTCATTGCCGATGCAAAGCCA 4038 Query 23291 TGCAGCCGTCATCT 23304 ||| || ||||| Sbjct 4039 GCCAGTCGCCATCT 4052 Score = 86.0 bits (94), Expect = 1e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 21741 CGACGGGAATACGGTTCGCTGCTGTCCGCGCTGATTGACCAGCCGCAGAACCCGGCACTG 21800 || || |||||||| ||||| ||||| | |||||||||||||||||| |||||| ||| Sbjct 2450 CGTCGCGAATACGGCTCGCTTCTGTCGCAGATGATTGACCAGCCGCAGACCCCGGCCCTG 2509 Query 21801 CGCCTGCAGATTATG 21815 |||| |||||||||| Sbjct 2510 CGCCGGCAGATTATG 2524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109050476766412