Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq486 150 3e-31 seq65 138 2e-27 seq216 84.2 4e-11 >seq486 Length=217039 Score = 150 bits (166), Expect = 3e-31 Identities = 380/570 (67%), Gaps = 11/570 (2%) Strand=Plus/Plus Query 213780 GGACACATGAGGCTCCAGTCCCCGTCATCTCTGA-CTCTCTGCATGAACAGGTCCGGGAC 213838 || ||||| |||||||| ||| ||| | ||| | | |||| |||||| || || | || Sbjct 175959 GGGCACATAAGGCTCCACTCCTCGTTGT-TCTCAACCCTCTTCATGAATAGATCTGAGAT 176017 Query 213839 CCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAG 213898 |||||| || |||||| || | | | | || || || | ||| || || Sbjct 176018 CCACAGAGCATAGAACAGCTCTCGCGCGCGCACTTCCTCTTTGCCCGTGTTCTTCTTCAA 176077 Query 213899 ATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGG 213958 ||||| || || || ||||| |||||||||||||| | ||||| ||| |||||||| || Sbjct 176078 GTCTAGGAACTCGAATATGTCAGCGTGCCACGGCTCGAGGTAGACGGCGAAGGCGCCGGG 176137 Query 213959 CC---TCTTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGG 214015 || | ||||||||||||||||| | ||| ||||| | | |||||| | ||| Sbjct 176138 CCGCTTGTTGCCGCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTACACGCGCAGCATGGG 176197 Query 214016 TACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGG-- 214073 |||||||||||||| ||||| || ||||| || || | ||| || || | | Sbjct 176198 CACCAGCCCGTTGGAGACGCCGTTCGTGCCCGCGATGTAGGTGCCTTTCGCTCTGATGCA 176257 Query 214074 TTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACA 214133 || |||| | |||||||| || ||| | ||||| || | || || || ||| | Sbjct 176258 ATGAACATG--AACTCCTATGCCGCCCGCGGATTTGGATATTAATGCACACTGCTTCAGA 176315 Query 214134 GTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGC 214193 || || ||| || | |||||||| || | | | | | ||| || |||||| Sbjct 176316 GTGTCGTAGATACCTTCGATGCTGTCGTCCTTCATGGCGATGAGGAAACATGAGGAGAGC 176375 Query 214194 TGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTA 214253 || || | || | | | | ||| || ||||||||||| || | | |||| | Sbjct 176376 TGAGGGCGGGGGGTGGCGGCCGAGAACAGGGTGGGGCTGGCGTGCGTGAAGTACTTCTCG 176435 Query 214254 GAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGAT-CTGTAGAGC 214312 ||||| || ||||||| | | | | | ||||||| |||||| | | | | Sbjct 176436 GAGAGCAGGTTGTAGGTGGTGATGGCGGCGTCGATGTCGGCGCCGTGGATGCCGATGGAC 176495 Query 214313 GCACCTCATCAGCATGTGCTGGGGCCTCTC 214342 | || ||||||||||||||| |||| ||| Sbjct 176496 AC-CCGCATCAGCATGTGCTGCGGCCGCTC 176524 Score = 134 bits (148), Expect = 3e-26 Identities = 492/758 (65%), Gaps = 42/758 (6%) Strand=Plus/Plus Query 212900 CAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGA 212959 ||||||| ||||||| | |||||| || || || || || || || ||||||| |||||| Sbjct 175094 CAGGTGATGGTTGACCACCTGGAATTCTCCAGAAAGAACTCTTCTTTGGTAAATGTTTGA 175153 Query 212960 AGTGTAGGGCTCGA-TGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCA 213018 |||| | ||||| | || | || ||||| || ||||||||||||||| ||| ||||||| Sbjct 175154 AGTGAATGGCTCAAATGAT-TCATTGTTGCCAAGAATCTGTGCAGTGGAGGCGGTGGGCA 175212 Query 213019 TGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGA--TGAGGCGCCGAAGCTC 213076 |||| |||| || ||| ||||| || || || | ||| | || | ||| | Sbjct 175213 TGGGGGCCAGCAACAGAGAGTTCCGCAGGCCATGTTTCGCGATCTTCTGCTTCAGAGCAC 175272 Query 213077 TGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAA 213136 | ||||||||| ||| || ||| ||| |||||| ||| | ||||| Sbjct 175273 T--CCAGTCCCA-----CAGGTCTGTGGGTGTCTTTC----CCCACATTTCATATTGCAA 175321 Query 213137 GATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAG 213196 || |||| || | || | || || | || ||| | | | |||||| Sbjct 175322 TATTCCTTCACTGGCCGGACAACCAGCATACGTTTCATAAACGCCGAGTTTTTCGGCCAG 175381 Query 213197 CTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTT 213256 || ||| || | | || | || ||||||||||||||||| | |||||||| Sbjct 175382 TTCACAGCTAGCTTCTAAAGCCCCATAATAGATGGTTTCAAATATTTGTTGATTGAGCTT 175441 Query 213257 CTTGGC-------CTCTGGGGACGTGAAGG-GCATCATCATGCGTTGGAACACATCAGCC 213308 || ||| |||| | | ||||| |||||| || | || |||| ||| Sbjct 175442 CTGGGCTCCTTCACTCTCGTAA--GGAAGGCGCATCA--ATAC----AAAAGCATCGGCC 175493 Query 213309 AGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCT-C 213367 || || ||||| || |||||||| |||| ||| |||| ||||||||| | || || Sbjct 175494 AGACCTTGGACGCCAATGCCGATAGGTCGGTGCCTCATGTTAGACTT-TTTCGCTTCTGG 175552 Query 213368 CAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGAC 213427 | ||| || | || ||||| |||||||| ||||| || | |||||| || Sbjct 175553 GACGGGATAGTAATTAACATCGATAATCTTGTTCAGGTTCTCAGTTATGATTTTGGTCAC 175612 Query 213428 ATGGGCCAGGTACTCGTGATTGAACACG---TAGCCCCCGTCCTGCACAAACTCAGGCAG 213484 || || | ||| || | | | || | || |||||| | Sbjct 175613 TTGTTTTAGTTTCTCAAAAT--CATATGTTTTATTTTCGGT----TACAAACATGTTGAC 175666 Query 213485 GGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTC 213544 || || |||| ||||||||| || || || | || ||||||||| | ||||| Sbjct 175667 AGCAATTGACGCCAAGTTGCAAACAGCTACTTCATCAGCAGATGTGTACTCAACAATCTC 175726 Query 213545 GGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGC 213604 ||||| || ||||||||| |||||| |||| |||| || || |||| |||| Sbjct 175727 CGTGCATAGATTGCTGCATTTGATGGTTCCCAAATTCTTTTGATTGCTCTTTCTGTTGCA 175786 Query 213605 AGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTA 213642 | ||| ||||| |||||||| || | || ||||||| Sbjct 175787 TGCATCTTTGTAAAGCATGTATGGAGTTCCAGTCTCTA 175824 >seq65 Length=1244346 Score = 138 bits (152), Expect = 2e-27 Identities = 126/159 (79%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 48421 TGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGC 48480 || |||||| ||||| || |||||||| || ||||| ||||| ||||||||| || || Sbjct 630968 TGAGTACATTTCAGAATGTACATTCTCCATGGCGATTTGGAATCCGTAGAAGCATCTAGC 630909 Query 48481 CTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATC 48540 ||| ||| |||||||| |||||| || |||| || |||||||| || |||||||| Sbjct 630908 TTCAGTCACTTGCACTTCCTGGGAGAACCTTTCCACAAGGTTCTCATTAACAATCCCATC 630849 Query 48541 TGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATG 48579 |||||||||||||| || | ||||||||| | ||||| Sbjct 630848 AGAAGCAGCAAAGAATGCCAAGACATGTTTGATAAAATG 630810 Score = 118 bits (130), Expect = 2e-21 Identities = 132/174 (76%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 48188 AGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAG 48247 || || ||||||| ||| |||| ||| |||||||| || | |||||| |||||||||| Sbjct 631660 AGTCCGGGCATGAGCCCTCTCTTTTTAAGCCAGAAGATGGATGCGAAACTGCCAGAGAAG 631601 Query 48248 AAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCT 48307 ||||||||||| ||||||||||| || | || || ||||| | ||| ||||| || Sbjct 631600 AAGATGCCCTCAACTGCCGCGAATGCTACTATTCTTTCACCGAATGTTGCGGTCTTG-CT 631542 Query 48308 GA-GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTC 48360 | |||||| | ||||||||| ||||||||||| | || || | ||||| Sbjct 631541 GCCGATCCACTGCATCGCCCAGTCAGCCTTCTTCTTTACACAGGGAAGGGTCTC 631488 >seq216 Length=582351 Score = 84.2 bits (92), Expect = 4e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||| | | | ||| |||||||||||||| || | |||||||| ||| Sbjct 237797 TTCACTTTGTCCTCTAACTTTGAGATACGTTCCAGTTTGCGACGTCTGCATTTGGAAGCT 237738 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | ||||| | | | || || ||| ||||| ||||||||| ||||||||| Sbjct 237737 GCGACTCGGTTTCTTTGCCGTTTGCGCTCCAGTTTGATACGTTCCTGGGAGTCCATGTCG 237678 Query 241619 ATCGGAGACTTGGG 241632 || || ||| |||| Sbjct 237677 ATGGGGGACATGGG 237664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931511910376960