Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq486 154 3e-32 seq65 100 5e-16 >seq486 Length=217039 Score = 154 bits (170), Expect = 3e-32 Identities = 320/474 (68%), Gaps = 8/474 (2%) Strand=Plus/Plus Query 221999 GGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATC 222058 || ||||| || ||||| | || ||||| | ||||||| |||||| || || | |||| Sbjct 175959 GGGCACATAAGGCTCCACTCCTCGTTGTTCTCAACCCTCTTCATGAATAGATCTGAGATC 176018 Query 222059 CACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGA 222118 ||||| || | || || |||| | ||| ||||| ||| |||| ||| ||| Sbjct 176019 CACAGAGCATAGAACAGCTCTCGCGCGCGCACTTCCTCTTTGCCCGTGTTCTTCTTCAAG 176078 Query 222119 TCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGT 222178 || | ||||| || |||||||||||||||||||| || |||||||| | |||||||| Sbjct 176079 TCTAGGAACTCGAATATGTCAGCGTGCCACGGCTCGAGGTAGACGGCGAAGGCGCCGGGC 176138 Query 222179 CGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGT 222238 ||||||||||| ||||| ||||| | | || |||| | | ||| || | || Sbjct 176139 CGCTTGTTGCCGCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTACACGCGCAGCATGGGC 176198 Query 222239 ACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTA 222298 ||||| |||||||| ||||| |||||| ||||| | || || || | | | Sbjct 176199 ACCAGCCCGTTGGAGACGCCGTTCGTGCCCGCGATGTAGGTGCCTTTCGCTCTGATG-CA 176257 Query 222299 CTGGCAGACATG----CCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAG 222354 || ||||| || || || || ||| ||| || || | || || ||| || Sbjct 176258 ATG---AACATGAACTCCTATGCCGCCCGCGGATTTGGATATTAATGCACACTGCTTCAG 176314 Query 222355 AGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACAT 222414 |||||| ||| || || || ||| ||||| | | | || ||||| || || | Sbjct 176315 AGTGTCGTAGATACCTTCGATGCTGTCGTCCTTCATGGCGATGAGGAAACATGAGGAGAG 176374 Query 222415 CTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTA 222468 ||||| || || ||| ||||| ||||| |||||||| || ||||| Sbjct 176375 CTGAGGGCGGGGGGTGGCGGCCGAGAACAGGGTGGGGCTGGCGTGCGTGAAGTA 176428 Score = 107 bits (118), Expect = 4e-18 Identities = 116/151 (77%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 221107 CATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGA 221166 || ||| | ||| ||||| ||||| ||||| || || || || || ||||| | ||| || Sbjct 175094 CAGGTGATGGTTGACCACCTGGAATTCTCCAGAAAGAACTCTTCTTTGGTAAATGTTTGA 175153 Query 221167 AGTGAACGGTTCGA-TGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCA 221225 |||||| || || | || | || |||||||| || ||||| || ||| ||||||||||| Sbjct 175154 AGTGAATGGCTCAAATGAT-TCATTGTTGCCAAGAATCTGTGCAGTGGAGGCGGTGGGCA 175212 Query 221226 TGGGTGCCACCAGCAGACTGTTGCGCAGTCC 221256 |||| |||| || |||| ||| ||||| || Sbjct 175213 TGGGGGCCAGCAACAGAGAGTTCCGCAGGCC 175243 >seq65 Length=1244346 Score = 100 bits (110), Expect = 5e-16 Identities = 120/158 (76%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 25581 GCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAA 25640 ||||||| |||| | || |||||||||||||| || |||||||| || || || ||||| Sbjct 630809 GCATTTTATCAAACATGTCTTGGCATTCTTTGCTGCTTCTGATGGGATTGTTAATGAGAA 630868 Query 25641 TC-TGTGCGAGAGATTCACCAGGGAAGTGC-AGTACGTGGAGGCCAAGTGTTTCTACGGT 25698 | |||| || || ||| || |||||||| ||| | || || | || |||||||| Sbjct 630869 CCTTGTG-GAAAGGTTCTCCCAGGAAGTGCAAGTGACT-GAAGCTAGATGCTTCTACGGA 630926 Query 25699 TTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTA 25736 ||||| || ||||| || ||||| || ||||| |||| Sbjct 630927 TTCCAAATCGCCATGGAGAATGTACATTCTGAAATGTA 630964 Score = 86.0 bits (94), Expect = 1e-11 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 25819 AAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAG 25878 |||| |||||| ||||| ||| |||||||| |||| ||| ||| || || || || Sbjct 631506 AAGAAGAAGGCTGACTGGGCGATGCAGTGGATCGGCAGCAAGACCGCAACATTCGGTGAA 631565 Query 25879 CGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATC 25938 | | ||||| || || || || ||||||||||| ||| || || || ||||| Sbjct 631566 AGAATAGTAGCATTCGCGGCAGTTGAGGGCATCTTCTTCTCTGGCAGTTTCGCATCCATC 631625 Query 25939 TTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGC 25998 |||||||| || ||| ||| ||||||||| ||| ||| ||| || | ||| | Sbjct 631626 TTCTGGCTTAAAAAGAGAGGGCTCATGCCCGGACTGACCTTCAGCAATGAATTGATCTCC 631685 Query 25999 AGGGACGAGG 26008 || || |||| Sbjct 631686 AGAGATGAGG 631695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928823970655360