Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq486 154 3e-32
seq65 100 5e-16
>seq486
Length=217039
Score = 154 bits (170), Expect = 3e-32
Identities = 320/474 (68%), Gaps = 8/474 (2%)
Strand=Plus/Plus
Query 221999 GGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATC 222058
|| ||||| || ||||| | || ||||| | ||||||| |||||| || || | ||||
Sbjct 175959 GGGCACATAAGGCTCCACTCCTCGTTGTTCTCAACCCTCTTCATGAATAGATCTGAGATC 176018
Query 222059 CACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGA 222118
||||| || | || || |||| | ||| ||||| ||| |||| ||| |||
Sbjct 176019 CACAGAGCATAGAACAGCTCTCGCGCGCGCACTTCCTCTTTGCCCGTGTTCTTCTTCAAG 176078
Query 222119 TCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGT 222178
|| | ||||| || |||||||||||||||||||| || |||||||| | ||||||||
Sbjct 176079 TCTAGGAACTCGAATATGTCAGCGTGCCACGGCTCGAGGTAGACGGCGAAGGCGCCGGGC 176138
Query 222179 CGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGT 222238
||||||||||| ||||| ||||| | | || |||| | | ||| || | ||
Sbjct 176139 CGCTTGTTGCCGCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTACACGCGCAGCATGGGC 176198
Query 222239 ACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTA 222298
||||| |||||||| ||||| |||||| ||||| | || || || | | |
Sbjct 176199 ACCAGCCCGTTGGAGACGCCGTTCGTGCCCGCGATGTAGGTGCCTTTCGCTCTGATG-CA 176257
Query 222299 CTGGCAGACATG----CCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAG 222354
|| ||||| || || || || ||| ||| || || | || || ||| ||
Sbjct 176258 ATG---AACATGAACTCCTATGCCGCCCGCGGATTTGGATATTAATGCACACTGCTTCAG 176314
Query 222355 AGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACAT 222414
|||||| ||| || || || ||| ||||| | | | || ||||| || || |
Sbjct 176315 AGTGTCGTAGATACCTTCGATGCTGTCGTCCTTCATGGCGATGAGGAAACATGAGGAGAG 176374
Query 222415 CTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTA 222468
||||| || || ||| ||||| ||||| |||||||| || |||||
Sbjct 176375 CTGAGGGCGGGGGGTGGCGGCCGAGAACAGGGTGGGGCTGGCGTGCGTGAAGTA 176428
Score = 107 bits (118), Expect = 4e-18
Identities = 116/151 (77%), Gaps = 2/151 (1%)
Strand=Plus/Plus
Query 221107 CATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGA 221166
|| ||| | ||| ||||| ||||| ||||| || || || || || ||||| | ||| ||
Sbjct 175094 CAGGTGATGGTTGACCACCTGGAATTCTCCAGAAAGAACTCTTCTTTGGTAAATGTTTGA 175153
Query 221167 AGTGAACGGTTCGA-TGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCA 221225
|||||| || || | || | || |||||||| || ||||| || ||| |||||||||||
Sbjct 175154 AGTGAATGGCTCAAATGAT-TCATTGTTGCCAAGAATCTGTGCAGTGGAGGCGGTGGGCA 175212
Query 221226 TGGGTGCCACCAGCAGACTGTTGCGCAGTCC 221256
|||| |||| || |||| ||| ||||| ||
Sbjct 175213 TGGGGGCCAGCAACAGAGAGTTCCGCAGGCC 175243
>seq65
Length=1244346
Score = 100 bits (110), Expect = 5e-16
Identities = 120/158 (76%), Gaps = 4/158 (3%)
Strand=Plus/Plus
Query 25581 GCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAA 25640
||||||| |||| | || |||||||||||||| || |||||||| || || || |||||
Sbjct 630809 GCATTTTATCAAACATGTCTTGGCATTCTTTGCTGCTTCTGATGGGATTGTTAATGAGAA 630868
Query 25641 TC-TGTGCGAGAGATTCACCAGGGAAGTGC-AGTACGTGGAGGCCAAGTGTTTCTACGGT 25698
| |||| || || ||| || |||||||| ||| | || || | || ||||||||
Sbjct 630869 CCTTGTG-GAAAGGTTCTCCCAGGAAGTGCAAGTGACT-GAAGCTAGATGCTTCTACGGA 630926
Query 25699 TTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTA 25736
||||| || ||||| || ||||| || ||||| ||||
Sbjct 630927 TTCCAAATCGCCATGGAGAATGTACATTCTGAAATGTA 630964
Score = 86.0 bits (94), Expect = 1e-11
Identities = 133/190 (70%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 25819 AAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAG 25878
|||| |||||| ||||| ||| |||||||| |||| ||| ||| || || || ||
Sbjct 631506 AAGAAGAAGGCTGACTGGGCGATGCAGTGGATCGGCAGCAAGACCGCAACATTCGGTGAA 631565
Query 25879 CGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATC 25938
| | ||||| || || || || ||||||||||| ||| || || || |||||
Sbjct 631566 AGAATAGTAGCATTCGCGGCAGTTGAGGGCATCTTCTTCTCTGGCAGTTTCGCATCCATC 631625
Query 25939 TTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGC 25998
|||||||| || ||| ||| ||||||||| ||| ||| ||| || | ||| |
Sbjct 631626 TTCTGGCTTAAAAAGAGAGGGCTCATGCCCGGACTGACCTTCAGCAATGAATTGATCTCC 631685
Query 25999 AGGGACGAGG 26008
|| || ||||
Sbjct 631686 AGAGATGAGG 631695
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928823970655360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |