Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_019501.1
Length=39646
Score E
Sequences producing significant alignments: (Bits) Value
seq813 163 7e-36
seq997 147 6e-31
>seq813
Length=55966
Score = 163 bits (180), Expect = 7e-36
Identities = 243/345 (70%), Gaps = 0/345 (0%)
Strand=Plus/Plus
Query 4173 GCCACCAAGCATTTGCATGGTTCCACCAACGCCCACGATGACTTCGGTAGTGAACCTATC 4232
||| || ||||| |||||||| || |||||| || | |||||||| ||| || | ||
Sbjct 13439 GCCGCCCAGCATCTGCATGGTACCGCCAACGTTTACCACAACTTCGGTGGTGTACTTCTC 13498
Query 4233 CTGTCCGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTTCCTTCAAGATAAACCTCAGA 4292
||| ||||| |||||| | || |||| || ||||| | ||| |||| |||
Sbjct 13499 AGCGCCGGACTGATCGGTCCATTTACGGGTGCGCAGTTGGCCTTCGATATAGACCTGAGA 13558
Query 4293 GCCTTTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACGCGGTG 4352
||||| |||||||| || | ||||| |||||||||||| || || |||||||||||
Sbjct 13559 ACCTTTACGCAGATACTCACCGGCAACTTCTGCCAGTTTGCCAAACAGCACCACGCGGTG 13618
Query 4353 CCACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGC 4412
||| || |||||||| || ||| || || ||||||||||| ||| || |||||
Sbjct 13619 CCATTCAGTCTGCTCTTTCATCTCACCGGTCGCTTTATCACGCCAGGATTCGGAAGTAGC 13678
Query 4413 AACTGTAAGGTTTGCAAATGCCGTTCCTGATGGTGAATATCTGATTTCTGGATCATGCCC 4472
| |||| ||| |||| ||| || || || | | ||| || || || ||
Sbjct 13679 CAGCGTAATGTTGGCAACTGCGCCACCACTCGGCATGTAGCGTACTTCCGGGTCCTGGCC 13738
Query 4473 AAGGCGACCAATAATGATCACCTTATTTACGCCTCTGCTTGCCAT 4517
|| ||| | | |||||||| |||||||||||||| |||||
Sbjct 13739 CAGATTACCGACGAGAATCACCTTGTTTACGCCTCTGCTGGCCAT 13783
>seq997
Length=29618
Score = 147 bits (162), Expect = 6e-31
Identities = 311/469 (66%), Gaps = 24/469 (5%)
Strand=Plus/Minus
Query 17242 ATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 17301
|||||| || | |||||||| |||| |||| | ||||||||| | | |||| || |
Sbjct 18254 ATGAGCTGATTAACCGCGATCATCTGCGCTGTCGTTATCTGCCTGCTGGTCTTTATGGCT 18195
Query 17302 TGGGCTGTTAATCATTACCGTGATAACGCCATGACCTACAAAGAACAGCGCGACAAAGCC 17361
||||| |||| || || || || |||||||| ||||||||||| |||||||| ||||||
Sbjct 18194 TGGGCGATTAACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGATAAAGCC 18135
Query 17362 AC---------------------ATCCATCATCGCTGACATGCAGAAGCATCAACGTGAT 17400
|| ||| |||| |||||||||| | || ||||||
Sbjct 18134 ACTGAGAAACTCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGAT 18075
Query 17401 GTAGCAGAACTCGACGCAAGATACACAAAGGAGCTTGCTGATGCTAACGCGACTATCGAA 17460
| || | || || || | |||||| || | |||||||| || | | || ||
Sbjct 18074 GCCGCTGCGCTGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAGATATCATTGAG 18015
Query 17461 AGCCTCCGTGCTGATGTTTCTGCTGGTCGTAAGCGCCTGCAAGTCGCCGCCACCTGT--- 17517
| || | | ||||| |||||| |||||||| ||||| || ||| | ||||
Sbjct 18014 CGTCTGCATAGCGATGTCATTGCTGGCCGTAAGCGGCTGCAGCTCAACGCAAACTGTCCC 17955
Query 17518 GCAAAGTCAACGACCGGAGCCAGCGGCATGGGCCATGGAGAAAGCCCAAGACTTACAGCA 17577
|| || | ||||||| || ||||||||||| ||| |||| |||||||| |
Sbjct 17954 GCGAACGGAGCGACCGGCACCGGCGGCATGGGCGATGCTTCCGGCCCCAGACTTACTGAC 17895
Query 17578 GATGCTGAACTCAATTATTACCGTCTCCGAAGTGGAATCGACAGGATAACCGCGCAGGTT 17637
||||||| |||||| | ||| ||| |||||| || | || ||||||
Sbjct 17894 TCCGCTGAACGGGATTATTTCATCCTCAGAAAGCGAATCGTCACAGTGACGAAGCAGGTC 17835
Query 17638 AACTACCTGCAGGAGTACATCAGGACGCAATGCCTGAAATAAttttttt 17686
||| |||||| | ||||| || || || ||| | |||||| |||||
Sbjct 17834 GGCTATCTGCAGAACTACATAAGCACTCAGTGCTTAAAATAAAGTTTTT 17786
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 126742899843424
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |