Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_019501.1 Length=39646 Score E Sequences producing significant alignments: (Bits) Value seq813 163 7e-36 seq997 147 6e-31 >seq813 Length=55966 Score = 163 bits (180), Expect = 7e-36 Identities = 243/345 (70%), Gaps = 0/345 (0%) Strand=Plus/Plus Query 4173 GCCACCAAGCATTTGCATGGTTCCACCAACGCCCACGATGACTTCGGTAGTGAACCTATC 4232 ||| || ||||| |||||||| || |||||| || | |||||||| ||| || | || Sbjct 13439 GCCGCCCAGCATCTGCATGGTACCGCCAACGTTTACCACAACTTCGGTGGTGTACTTCTC 13498 Query 4233 CTGTCCGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTTCCTTCAAGATAAACCTCAGA 4292 ||| ||||| |||||| | || |||| || ||||| | ||| |||| ||| Sbjct 13499 AGCGCCGGACTGATCGGTCCATTTACGGGTGCGCAGTTGGCCTTCGATATAGACCTGAGA 13558 Query 4293 GCCTTTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACGCGGTG 4352 ||||| |||||||| || | ||||| |||||||||||| || || ||||||||||| Sbjct 13559 ACCTTTACGCAGATACTCACCGGCAACTTCTGCCAGTTTGCCAAACAGCACCACGCGGTG 13618 Query 4353 CCACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGC 4412 ||| || |||||||| || ||| || || ||||||||||| ||| || ||||| Sbjct 13619 CCATTCAGTCTGCTCTTTCATCTCACCGGTCGCTTTATCACGCCAGGATTCGGAAGTAGC 13678 Query 4413 AACTGTAAGGTTTGCAAATGCCGTTCCTGATGGTGAATATCTGATTTCTGGATCATGCCC 4472 | |||| ||| |||| ||| || || || | | ||| || || || || Sbjct 13679 CAGCGTAATGTTGGCAACTGCGCCACCACTCGGCATGTAGCGTACTTCCGGGTCCTGGCC 13738 Query 4473 AAGGCGACCAATAATGATCACCTTATTTACGCCTCTGCTTGCCAT 4517 || ||| | | |||||||| |||||||||||||| ||||| Sbjct 13739 CAGATTACCGACGAGAATCACCTTGTTTACGCCTCTGCTGGCCAT 13783 >seq997 Length=29618 Score = 147 bits (162), Expect = 6e-31 Identities = 311/469 (66%), Gaps = 24/469 (5%) Strand=Plus/Minus Query 17242 ATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 17301 |||||| || | |||||||| |||| |||| | ||||||||| | | |||| || | Sbjct 18254 ATGAGCTGATTAACCGCGATCATCTGCGCTGTCGTTATCTGCCTGCTGGTCTTTATGGCT 18195 Query 17302 TGGGCTGTTAATCATTACCGTGATAACGCCATGACCTACAAAGAACAGCGCGACAAAGCC 17361 ||||| |||| || || || || |||||||| ||||||||||| |||||||| |||||| Sbjct 18194 TGGGCGATTAACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGATAAAGCC 18135 Query 17362 AC---------------------ATCCATCATCGCTGACATGCAGAAGCATCAACGTGAT 17400 || ||| |||| |||||||||| | || |||||| Sbjct 18134 ACTGAGAAACTCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGAT 18075 Query 17401 GTAGCAGAACTCGACGCAAGATACACAAAGGAGCTTGCTGATGCTAACGCGACTATCGAA 17460 | || | || || || | |||||| || | |||||||| || | | || || Sbjct 18074 GCCGCTGCGCTGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAGATATCATTGAG 18015 Query 17461 AGCCTCCGTGCTGATGTTTCTGCTGGTCGTAAGCGCCTGCAAGTCGCCGCCACCTGT--- 17517 | || | | ||||| |||||| |||||||| ||||| || ||| | |||| Sbjct 18014 CGTCTGCATAGCGATGTCATTGCTGGCCGTAAGCGGCTGCAGCTCAACGCAAACTGTCCC 17955 Query 17518 GCAAAGTCAACGACCGGAGCCAGCGGCATGGGCCATGGAGAAAGCCCAAGACTTACAGCA 17577 || || | ||||||| || ||||||||||| ||| |||| |||||||| | Sbjct 17954 GCGAACGGAGCGACCGGCACCGGCGGCATGGGCGATGCTTCCGGCCCCAGACTTACTGAC 17895 Query 17578 GATGCTGAACTCAATTATTACCGTCTCCGAAGTGGAATCGACAGGATAACCGCGCAGGTT 17637 ||||||| |||||| | ||| ||| |||||| || | || |||||| Sbjct 17894 TCCGCTGAACGGGATTATTTCATCCTCAGAAAGCGAATCGTCACAGTGACGAAGCAGGTC 17835 Query 17638 AACTACCTGCAGGAGTACATCAGGACGCAATGCCTGAAATAAttttttt 17686 ||| |||||| | ||||| || || || ||| | |||||| ||||| Sbjct 17834 GGCTATCTGCAGAACTACATAAGCACTCAGTGCTTAAAATAAAGTTTTT 17786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126742899843424