Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_019529.1 Length=111506 Score E Sequences producing significant alignments: (Bits) Value seq962 197 1e-45 seq955 98.7 7e-16 seq952 98.7 7e-16 >seq962 Length=32987 Score = 197 bits (218), Expect = 1e-45 Identities = 288/399 (72%), Gaps = 6/399 (2%) Strand=Plus/Minus Query 28559 GAAGGAGTAACTGACAAAGGTTACTTAACAAACTCATTCCACTTAGACGTACTGAAGAAG 28618 ||||| || || || |||||||||| || ||| |||||| | ||||| ||||||| Sbjct 24390 GAAGGCGTGACCGATAAAGGTTACTACACCAACAGCTTCCACCTCGACGTGGAGAAGAAG 24331 Query 28619 GTAAACCCGTATGATAAAATCGACTTTGAAGCGCAAT-TCATCCCATACAGCTCCGGTGG 28677 ||||||||||| || || ||||||||||||||| | || || || | | ||| || Sbjct 24330 GTAAACCCGTACGACAAGATCGACTTTGAAGCGGCGTATCCGCCGAT-CGCCAACGGCGG 24272 Query 28678 TCATATCTGCTACGGGGAATTCCCTAATATGCGCCACAATATTGAAGCACTCGAAAATGT 28737 ||||||||||| || | ||| || || | ||||| | | || || ||| | || Sbjct 24271 CTTCATCTGCTACGGCGAGTACCCGAACATTCAGCACAACCTGAAGGCGCTGGAAGACGT 24212 Query 28738 GTGGGATTACGCCTA-CACCAAAGTCCCATACTACGGCACCAACACACCAATTGATGAAT 28796 |||||||||| ||| || || || ||||| |||||||||||||| || || || |||| Sbjct 24211 GTGGGATTACAGCTATCAGCAT-GTGCCATATTACGGCACCAACACGCCCATCGACGAAT 24153 Query 28797 GCTATAGCTGCGGATTCAAAGGTGAGTTCAATTGTACAAGCAAAGGTTTTGAGTGTCCTA 28856 |||| ||||| || | || |||||| | ||||| |||||||| ||| || || | Sbjct 24152 GCTACGAGTGCGGCTTTACCGGCGAGTTCGAGTGTACCAGCAAAGGCTTTACCTGCCCGA 24093 Query 28857 ACTGCGGAAACCACGACCCAG-AGAAATGCTCTGTCACCAGACGAGTGTGTGGCTACCTA 28915 | ||||| ||||||||| | | | || || || ||| | || ||||| ||||| || Sbjct 24092 AATGCGGTAACCACGACGCGGCACGCGTG-TCGGTAACCCGCCGCGTGTGCGGCTATCTC 24034 Query 28916 GGTAATCCTGGTACTCGTCCATTCAATGCAGGTAAACAG 28954 |||| || | | | ||||| || || || ||||| ||| Sbjct 24033 GGTAGCCCGGATGCGCGTCCGTTTAACGCCGGTAAGCAG 23995 >seq955 Length=33606 Score = 98.7 bits (108), Expect = 7e-16 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 45235 TGCGCCCTTAGCTCAGCTGGATAGAGCACGTCCCTTCTAAGGATGTGGTCGTAGGTTCGA 45294 |||||||||||||||| ||||||||||| ||||||||| |||||||||||||| Sbjct 1505 TGCGCCCTTAGCTCAGTTGGATAGAGCAACGGCCTTCTAAGCCGTAGGTCGTAGGTTCGA 1446 Query 45295 ATCCTACAGGGCGTGCCAT 45313 ||||||||||||||||||| Sbjct 1445 ATCCTACAGGGCGTGCCAT 1427 >seq952 Length=33737 Score = 98.7 bits (108), Expect = 7e-16 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 45235 TGCGCCCTTAGCTCAGCTGGATAGAGCACGTCCCTTCTAAGGATGTGGTCGTAGGTTCGA 45294 |||||||||||||||| ||||||||||| ||||||||| |||||||||||||| Sbjct 12144 TGCGCCCTTAGCTCAGTTGGATAGAGCAACGGCCTTCTAAGCCGTAGGTCGTAGGTTCGA 12085 Query 45295 ATCCTACAGGGCGTGCCAT 45313 ||||||||||||||||||| Sbjct 12084 ATCCTACAGGGCGTGCCAT 12066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356686601099878