Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_019538.1 Length=231743 Score E Sequences producing significant alignments: (Bits) Value seq974 111 2e-19 seq900 86.0 9e-12 >seq974 Length=31311 Score = 111 bits (122), Expect = 2e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 119939 GTTATTCTTCAATACAAGCAGTTTCTCAACCTCCAAATGCCACATAGGGTAATTCAGAGT 119998 ||| || |||| || ||||| | || || |||| |||||||||||||| ||| || Sbjct 12 GTTGTTTTTCAGGACCAGCAGGCTTTCCACTTCCAGGTGCCACATAGGGTAGAACAGGGT 71 Query 119999 AGCAGAGCCGCCACGTAGAGCACCTTGCGAACAGCTCTTAACCGCAGTATGGAAGTGCTT 120058 |||| ||||| || | | || || || ||| || ||||| || ||||||||||| Sbjct 72 CGCAGCACCGCCGCGCACGCCGCCCTGAGAGCAGGATTTTACCGCCGTCTGGAAGTGCTT 131 Query 120059 GTAGAATGGGATTACGCCGGTATGGGTTGCTTCGCCGTTGCGAATTGGTGAACCCTCCGC 120118 ||||| ||||| |||||| ||| |||||| ||| |||||| || ||| ||| Sbjct 132 ATAGAACGGGATACAGCCGGTGTGGAATGCTTCACCGCCGCGAATCGGGCTGCCCAGCGC 191 Query 120119 ACGAATAGCACCAGCATTAATACCAATACCAGCACGTTG 120157 ||| || ||| || || || || ||||| ||||| || Sbjct 192 ACGGATGCGACCGGCGTTGATGCCGATACCGGCACGCTG 230 >seq900 Length=38784 Score = 86.0 bits (94), Expect = 9e-12 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 199781 TCGGTGATTAGCGCAG-TTGGTAGCGCGTCTGGTTTGGGACCAGAGGGTCACAGGTTCGA 199839 |||| || |||||||| |||||||||| ||||||||||||||| ||||| |||||||| Sbjct 19461 TCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGGACCAGTGGGTCGGAGGTTCGA 19402 Query 199840 GTCCTGTATCACCGACCAC 199858 |||| | || |||||||| Sbjct 19401 ATCCTCTCTCGCCGACCAC 19383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741432972992720