Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_019541.1 Length=45364 Score E Sequences producing significant alignments: (Bits) Value seq968 329 9e-86 seq997 116 1e-21 >seq968 Length=32144 Score = 329 bits (364), Expect = 9e-86 Identities = 739/1098 (67%), Gaps = 23/1098 (2%) Strand=Plus/Plus Query 36193 GAAAAATGGATTGGTCCATTCATTCTGGACAATGTTGAACGTAGCCGGGTGCTGTGTAAT 36252 ||||| |||||||| ||||| ||||| || ||| |||| || | | | | || ||||| Sbjct 366 GAAAAGTGGATTGGCCCATTTATTCTAGATAATCTTGATCGAAACATGATCGTGAGTAAT 425 Query 36253 TTTGTGGCCACAAATGGACTTTATACCGTTTCTTCAGGTGGGAAT---CAGGCCGCTGTT 36309 ||||||||||| |||||| | ||| || || ||| ||| ||| | | ||| Sbjct 426 TTTGTGGCCACCAATGGATTGTAT-----TTGACCAA-TGGTAATTTTCAGTCACCGGTT 479 Query 36310 AACGTCACGATTGAAGTTGAAGTAACACCGGTAAATGAATCTGGTGCAGCGATTGGTAAT 36369 ||||| || | ||||||||||| || ||||| ||||| | | | ||||| || Sbjct 480 AACGTAACAGTCGAAGTTGAAGTTACTCCGGTGGATGAAAACGATCAGGATATTGGATAT 539 Query 36370 CCGATGCTGAAG-CAGATCATTTTGAAAGGTTCGGCAAAGTCGCGTCAAACCGTTGGCGC 36428 ||||| || ||| ||| | || | ||||| ||||||| | ||| |||| || || Sbjct 540 CCGATTCTTAAGTCAGTTG-TTCTAAAAGGGTCGGCAACTGCCCGTGAAACTGTGGGTAT 598 Query 36429 AACGCTGGATATGGTGACATTTCAAGGTCGCTGTAGTGTCCGTGCACGTCGTTTAACACC 36488 ||||| || ||||| ||||| ||||||| || ||||| |||||| | | | Sbjct 599 GACGCTATCAATTTCAACATTCCAAGGGCGCTGTAAAGTTCGTGCTCGTCGTGTCAATCA 658 Query 36489 AACACCGGCGG--TTACA----ACGGTAGTAGATGAAGTAAAGTGGCAGGCGCTTTATGG 36542 || || || || || || || || || || || ||| ||||| || || Sbjct 659 GACTGATAAGGACTTTCAGGGCACCGTCGTTGACGATGTGAAATGGTCTGCGCTGTACGG 718 Query 36543 TGCTTATCCTTTGCAAAGCACAGTGTATGAACATGAAACGGTTTTTCGTGCGCGCACTTA 36602 || |||| || || | |||| |||||| ||| |||||| |||| || | || || Sbjct 719 GGCACATCCGTTAAAACGGTCAGTCTATGAAAATGGTACGGTTGTTCGCGCAAGAACATA 778 Query 36603 TGCAACCACTGGAGCTTTATCTGTTAAGTCCCGCAAGATCAATTTTGATCTTCAGCGGAT 36662 |||||| | || |||||||| || || || ||| | ||||| ||||||| Sbjct 779 TGCAACTGCGGGTGCTTTATCCGTCAAAGAGCGAAAGCTTAATTTGCTGGTTCAGCGAGA 838 Query 36663 GTTACCGACTTTTAAAAACGGCGCAATGACGACAGAGCTATTTCCAACATCAAGCTTTGC 36722 || ||||||| | |||| || ||||| || || | | | | ||||| |||||||| Sbjct 839 ATTGCCGACTTATGAAAATGGTGCAATTACTACGGCCCGACAAGCGACATCTAGCTTTGC 898 Query 36723 TGATGCATTGGTTTCAATGGCACTGGATGACAAGATAGGCCGCCGTACGATCGACGAAAT 36782 ||||| || |||||| |||| ||| || || || ||| | | || | | Sbjct 899 CGATGCGTTAGTTTCATTGGCCACAGATCCAAAAATTGGACGCATGTCTTTGGATAATCT 958 Query 36783 AGATCTGGAAAATATCTATCGGACTTATAACGATGTAGTTGATTATTTTGGTACACCACT 36842 ||| | || |||||||| ||||||| | || ||||||||||||| || || ||||| Sbjct 959 GGATTTAGATAATATCTACGAGACTTATCATGACATAGTTGATTATTTCGGAACCCCACT 1018 Query 36843 TGCGGCTGAGTTCTGTACTACGATTGATGATACAAACCTGTCTTTTGAAGAGCTGGTCAC 36902 || || ||||||||||||||| |||||||| |||| |||| |||||||| | | || Sbjct 1019 GGCTGCCGAGTTCTGTACTACGCTTGATGATTCAAATGTGTCATTTGAAGAAATTGCCAA 1078 Query 36903 CAATCTTTGTGATGCCGTGTTTTGT-ACTGCATATCGTCAAAATAATAAGCTCAAGCTTT 36961 | || ||| ||||| | || ||||||||| || ||||| | | Sbjct 1079 GATGATTGAAGAT-AGTTGTTTCATAACGATCTATCGTCAAGGTACCAAGCTTCGCGTGT 1137 Query 36962 ATTTTGAACGTCCAACTGATAACTCGGTAATGCTATTTAACTTCAGGAATATTATTCCTG 37021 |||||| |||| ||| || || || | ||||||||||||||||||||||| Sbjct 1138 TTTTTGAGAAGCCAAGTGACAATTCATCTTTGTTGTTTAACTTCAGGAATATTATTCCAA 1197 Query 37022 ATAGTTACAAGCATGATCTTACCTTTGGCGTGATGGATGACTACGATGGACTGATCTATG 37081 | | | ||| | || ||| ||| | | |||||| | || || | | |||| Sbjct 1198 AGACATTTGAGCCGTCGCGTAACTTCGGCATCACGGATGATTTTGACGGTATTGTTTATG 1257 Query 37082 AATACACGGATCCGGCCGACGATAGTCGTATCAATATCTATCTACCGGATAAAGGGGCCA 37141 | | || ||||| ||||| || | |||||||||||||| | || ||| | | | Sbjct 1258 AGTGGACCGATCCATCCGACAATGGCCGTATCAATATCTACTTGCCTGATCAGAACGTAA 1317 Query 37142 AGAACCCCAAAGAGGTGAAATCTGTAGGTGTGCGTAACAAGTGGCAAGCTCATTTTAATG 37201 ||| || || ||| | ||||| || || ||||||||||||||||| || ||||| |||| Sbjct 1318 TGAATCCAAAGGAGATTAAATCAGTTGGGGTGCGTAACAAGTGGCAGGCGCATTTCAATG 1377 Query 37202 CGTACCGGCTTTGGAACAAGCTTCGCT-TCCAGCGCAAATCCATT-ACCTTTGATGCGGC 37259 | | || |||| ||||| | | || | | ||| |||| | ||||| || || Sbjct 1378 CTCATCGTCTTTACAACAAATTGGTATATCAAACAGAAA--CATTGAAGTTTGAAGCTGC 1435 Query 37260 ACCTGAGTCAGAATTACT 37277 |||||||| |||||||| Sbjct 1436 TCCTGAGTCTGAATTACT 1453 >seq997 Length=29618 Score = 116 bits (128), Expect = 1e-21 Identities = 294/441 (67%), Gaps = 6/441 (1%) Strand=Plus/Minus Query 18488 ACTCGTGGTATGCGAAAGTTTGGTGATAAGTTTGGCCGAATTGGCTTATGGGTGATGAAC 18547 || ||||| |||| |||| || || ||||| ||| | | | | || ||| || Sbjct 9217 ACACGTGGCCTGCGTAAGTACGGCGACAAGTTCAACCGTGTCGTGCTCTTCGTTATGCAC 9158 Query 18548 TCAGATACATATTTCGATATTGTCGATGATGCTATCACTAAGCAAATTTACGGTGAATCT 18607 || | ||| || ||||| || || ||||| || ||| | || |||| |||| ||| | Sbjct 9157 TCCGCTACCTACTTCGACATCGTGGATGAGGCGATCGCCAACAAAATCTACGAAGAAGCG 9098 Query 18608 GAAATCGTTATCTATGGTGGTTTACCAGGAACCTTAGGAAAGCCGGTATTGGTGACGGAT 18667 | | || | || || || || || ||| | || || ||||| |||| || ||| Sbjct 9097 GGCGTAGTGGTTTACGGCGGACAGCCGGGCACCCTGGGTAAACCGGTGCTGGTTACCGAT 9038 Query 18668 GC--TGTAGG-TGATAACGATGCTTTTGGCTTGCAGTATGGTGCTGTAACAGTAACTGAA 18724 | || | | |||| |||| ||| |||| | | || || || || |||||||| Sbjct 9037 ACCATGGACGCTGATG-CGATCCTTG-GGCTGGTGGCCGGG-GCAGTGACTGTAACTGAG 8981 Query 18725 TCACAAGTACCGGGCTTCCGAGCTTATGACATCAATGATGAAGAAAACTTAGCAATCGGT 18784 || || | ||||| ||||| | || |||||||| ||| | |||||| | |||||||| Sbjct 8980 TCTCAGGCTCCGGGGTTCCGTTCATACGACATCAACGATCAGGAAAACCTGGCAATCGGC 8921 Query 18785 ATGCGTGCTGAAGGTGCATTTAACCTAGATATTCTTGGTTATAGTTGGGATACATCGAAA 18844 ||||||||||| | | || | ||| | || ||||| || ||||||| || ||| Sbjct 8920 TACCGTGCTGAAGGCGTGGTGAATGTCGATTTGCTGGGTTACAGCTGGGATATCTCCAAA 8861 Query 18845 GGTGAAAATCCTGACCTTACATTACTTGGTTCAAGCGCTAACTGGATTAAATATGCAACC 18904 ||||| || || ||||| || | | || | | |||||||| || | ||| Sbjct 8860 GGTGATAACCCGGACCTGACCAAAATCGGCACTGCAGGTAACTGGAAGAAGCACTTCACC 8801 Query 18905 AGCAACAAAATGACAGCAGGT 18925 ||||||||| ||| || ||| Sbjct 8800 AGCAACAAATCGACGGCTGGT 8780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145040110035928