Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_019544.1 Length=49335 Score E Sequences producing significant alignments: (Bits) Value seq754 297 6e-76 >seq754 Length=71200 Score = 297 bits (328), Expect = 6e-76 Identities = 544/793 (69%), Gaps = 8/793 (1%) Strand=Plus/Plus Query 45433 AACTATGAAACAATATCTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTGGAGAAAGA 45492 ||| |||||||| ||||| || ||| || || | | | || | ||| | |||| | Sbjct 66012 AACCATGAAACAGTATCTTGAATTGATGAAAAAAGTGCTCGATGAGGGCACGCCGAAAAA 66071 Query 45493 AGATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCA 45552 || || || || || || || | || | || |||| ||| ||||||| || || || Sbjct 66072 CGACCGTACCGGCACCGGTACGCTCTCCATTTTTGGCCACCAGATGCGCTTCAATTTACA 66131 Query 45553 GGACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACT 45612 ||| || ||||| || |||||||| || | ||| | |||||||||||| ||||||| Sbjct 66132 GGAAGGCTTCCCTCTGGTGACGACTAAGCGCTGCCATCTGCGCTCGATCATTCATGAACT 66191 Query 45613 GCTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGAT 45672 ||||||||| | |||||||||| || ||| ||| |||| || || || | || Sbjct 66192 GCTCTGGTTCCTGCAAGGCGATACCAACGTTGCGTATCTGCACGAAAACAACGTCTCCAT 66251 Query 45673 TTGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCG 45732 |||||||| ||||| |||||||||||| | || ||||| | |||||| ||| ||||| Sbjct 66252 CTGGGACGAATGGGCAGATGAAAACGGCAACCTGGGCCCGGTTTACGGCAAGCAGTGGCG 66311 Query 45733 GTCGTGGAAAGGGGCTGACGGGAAAACGGTCGACCAAATTGCGGCGGTCTTTAAGGAAAT 45792 | ||| | | |||| || | ||||| || | | || | || | | Sbjct 66312 CGCATGGCCAACGCCTGATGGCCGCCATATTGACCAGATCACCACCGTGATGAACCAGCT 66371 Query 45793 CAAGCGCAACCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAACGTGGCAAAGTTGGG 45852 || | | || ||||||| || | |||| ||| |||||||| | || ||| Sbjct 66372 GAAAAACGATCCAGACTCGCGCCGAATCATTGTTTCCGCCTGGAACGTCGGCGAGCTGGA 66431 Query 45853 GGAAATGAAGTTGCCCCCATGTCATTACGC---CTTTCAGTTTTACGTCGCGAATGGCCG 45909 ||||| | || | || || || ||| ||| ||||| |||||||| | || Sbjct 66432 CAAAATGGCGCTGGCACCGTGCCA---CGCGTTCTTCCAGTTCTACGTCGCTGACGGAAA 66488 Query 45910 GTTGTCATGCATGTGGCAACAGCGTTC-TGTCGATACATTTCTAGGATTGCCGTTTAACA 45968 | | || ||| | | |||||||| ||| ||| || || || |||||||||||| Sbjct 66489 GCTCTCCTGCCAGCTCTACCAGCGTTCCTGT-GATGTGTTCCTCGGCCTGCCGTTTAACA 66547 Query 45969 TCGCTAGCTATGCGCTGTTGACACATATGGTTGCCCAACAATGCGACCTCGATGTCGGCG 46028 | || |||||||||||||| |||||| | || || || || ||||| || || || | Sbjct 66548 TTGCCAGCTATGCGCTGTTAGTCCATATGATGGCGCAGCAGTGTGACCTGGAAGTGGGGG 66607 Query 46029 AACTCATTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACAAGCGAAAC 46088 | | | | ||||| || ||| |||| | |||| || ||| |||| || | | | Sbjct 66608 ATTTTGTCTGGACCGGTGGGGACACCCATCTCTACAGCAACCATATGGAGCAGACCCATC 66667 Query 46089 TGCAGCTGACGCGCGAGCCGCGCCCGCTGCCGAAGCTCGTGATCAAACGGAAGCCGCCGT 46148 | |||||||| ||||| |||||| |||||||||||||| | ||||| || || ||| ||| Sbjct 66668 TCCAGCTGACCCGCGAACCGCGCGCGCTGCCGAAGCTCATCATCAAGCGCAAACCGGCGT 66727 Query 46149 CTATCTTTGACTATGAATACGAGGATTTTGAATTTGTCGGCTATGACCCGCACCCGGCGA 46208 | ||||||||||| | ||| |||||||| ||| ||||| ||||||||||| | | Sbjct 66728 CAATCTTTGACTACCGCTTCGATGATTTTGAGATTGAGGGCTACGACCCGCACCCTGGCA 66787 Query 46209 TTAAGGCTCCTGT 46221 | || || || || Sbjct 66788 TCAAAGCGCCCGT 66800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157747039324916