Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_019545.1
Length=47355
Score E
Sequences producing significant alignments: (Bits) Value
seq997 625 9e-175
>seq997
Length=29618
Score = 625 bits (692), Expect = 9e-175
Identities = 652/852 (77%), Gaps = 3/852 (0%)
Strand=Plus/Minus
Query 41623 TAGGCCTGAACAACCTGCACCTGCTGCGCCACGGAGAACACCATGGCGCACGAATTACAA 41682
|||||||||||||||| ||||| ||||||||||||| |||||||||| |||||||||
Sbjct 24647 TAGGCCTGAACAACCTATACCTGATGCGCCACGGAGATAACCATGGCGCTAGAATTACAA 24588
Query 41683 CTCATCAAGCAGTCATCTGGAATTCTGATCCCCGCTACGCCGGAGACCAGCGAAATTCTG 41742
|| || || || || ||||| |||||||| |||||||| ||||||||||| || |||
Sbjct 24587 CTTATAAAACACCACTCAGGAATACTGATCCCGGCTACGCCCGAGACCAGCGATATCCTG 24528
Query 41743 CAATCAAAAATTAAACTCGGTGCCGTGCTGGTGGCTGAGTTCCGCCAGGTGAGGAATCCT 41802
||||| |||| ||||| | || || || || |||||| | | ||| | || ||
Sbjct 24527 CAATCTAAAACCCGGCTCGGCGATGTTCTTGTTGCCGAGTTCAGGCGGGTACGAAACCCG 24468
Query 41803 GCATTCCATCGCCGCTTTTTCGCGTTGCTTAATCTTGGGTTTGAATACTGGGAACCCACC 41862
|||||||| || |||||||| ||| | || ||||| || ||||||||||||||||| |||
Sbjct 24467 GCATTCCACCGGCGCTTTTTTGCGCTTCTCAATCTCGGTTTTGAATACTGGGAACCAACC 24408
Query 41863 GGCGGCGCCATTTCTGCCAACGAGCGCAAACTGGTAAACGGTTATGCAAAGTTTCTTGCT 41922
||||| || |||||| ||||||||| || ||| | | ||| || || ||||| || |||
Sbjct 24407 GGCGGGGCTATTTCTAGCAACGAGCGGAAGCTGATTACCGGCTACGCCAAGTTCCTGGCT 24348
Query 41923 GCATATGGCGGGAATGAGGGCGCATTACTGGATGCGGCTGAACAGTATCTGGAACAGATT 41982
||||||||||||| ||||| || | | ||||| || |||||||| ||||||||| ||
Sbjct 24347 TCATATGGCGGGAACGAGGGGGCTCTGATCGATGCTGCCGAACAGTACCTGGAACAGGTT 24288
Query 41983 GCAAACCGCCGGGTAACAAACGGGATTAGCCTGTGTAAATCTTTCGATGCATACCGCGCA 42042
|| | || || || || || || ||||||||||| ||||| |||||||| |||||| ||
Sbjct 24287 GCTTATCGGCGTGTCACGAATGGCATTAGCCTGTGCAAATCCTTCGATGCTTACCGCTCA 24228
Query 42043 TGGGTGACGGTTGAGGCTGGTCACTATGACGCCATCCAGCTACCTGATGGCACCCTCCGC 42102
||||||| |||||||| || |||| ||| ||||| ||||||||||| || || |||
Sbjct 24227 TGGGTGATCGTTGAGGCAGGGCACTTTGATGCCATTCAGCTACCTGACGGAACACTCAAA 24168
Query 42103 AAACATCCCCGCAGCATTGCTTTTTCCAGCATGGATGAGGTCGAATTTCAGCAGTTGTAT 42162
|| ||||| || ||||| | || ||| |||||| ||| |||| || |||||| | |||
Sbjct 24167 AAGCATCCACGTAGCATCTCATTCGCCAACATGGACGAGCTCGAGTTCCAGCAGCTCTAT 24108
Query 42163 AAATCCGCGCTTGATGTGCTCTGGCGGTGGATTTTATCACGTACATTCCGTACTCAGTGC 42222
||| | ||||| ||||| ||||| || ||| | | || ||| ||||||||| || |||
Sbjct 24107 AAAGCTGCGCTCGATGTTCTCTGACGCTGGGTCCTGTCGCGTTCATTCCGTAGTC-GTGA 24049
Query 42223 -GAGGCCGAGAACGCCGCCGCCCAGCTAATGAGCTTTGCGGGGTGATGGCGATGAAATAC 42281
||||| || || | |||||| |||||| | |||||||||||||||| ||||| |
Sbjct 24048 TGAGGCAGAAAATGTCGCCGCGCAGCTACTTGACTTTGCGGGGTGATGG-AATGAAGAAG 23990
Query 42282 TCCTGGTTCCATCATCACGACTGCACAACCGAGCAGGCCGATGAGCTGATGGCTCGGTAT 42341
|||||||||| || ||| |||| ||||| |||||||| || ||| | || ||
Sbjct 23989 ACCTGGTTCCACCACACCGATTGCAGCACCGAACAGGCCGACGAACTGGTTAAGCGTTAC 23930
Query 42342 CGGGCGCGCGGTGTCAAAACTGAGCGTAGCCTCAATCCGGATTACACCACCTGGACAGTT 42401
|||||||| || |||||| ||||| || ||||||||| |||||||| ||
Sbjct 23929 AAAGCGCGCGGCGTTCGGGTTGAGCGCAGCCTTAACCCGGATTACGTGACCTGGACTGTC 23870
Query 42402 AGCGCGTTTCTCCCTACCTCCAGCAAACCGGCCAGGCCGGATAACCGCTGGCGTAACCGG 42461
|| || || || || ||||| | ||||| || | ||||| | ||||||||| ||||||
Sbjct 23869 AGTGCATTCCTTCCGACCTCAAATAAACCAGCGCGCCCGGACAGCCGCTGGCGAAACCGG 23810
Query 42462 GTCTGGGGGTGA 42473
| |||||||||
Sbjct 23809 ATGTGGGGGTGA 23798
Score = 437 bits (484), Expect = 3e-118
Identities = 409/520 (79%), Gaps = 0/520 (0%)
Strand=Plus/Minus
Query 44774 CAAAGTTAAGTGCTGCCGTTCTGGGGCTGGTGCTTGCCGGTGCGTCTGCGTCAGTGATTC 44833
||||| | ||| |||| |||||||||||||| | || ||||| |||| || || ||||
Sbjct 20912 CAAAGCTGAGTACTGCAGTTCTGGGGCTGGTATTGGCTGGTGCTCCTGCATCCGTAATTC 20853
Query 44834 TCGACCAGTTTCTGGACGAAAAAGAAGGCAACCACACCACGGCATACCGAGATGGCTCCG 44893
|||| ||||||||| | |||||||| || ||| | |||||| ||| |||||| |
Sbjct 20852 TCGATCAGTTTCTGAATGAAAAAGAGGGTAACAGCCTCACGGCCTACAAAGATGGTGGTG 20793
Query 44894 GCATATGGACCATCTGTCGCGGTGCCACAAAGGTGGACGGTAAACCCGTTGTTCGGGGCA 44953
| || ||||| || || ||||| || || | ||| || ||||||| ||||| | |||||
Sbjct 20792 GTATTTGGACTATTTGCCGCGGCGCAACGATGGTTGATCGTAAACCGGTTGTGCAGGGCA 20733
Query 44954 TGACGCTGTCAAAGGCGAAATGCGACCAGGTTAACGCTATTGAACGTGACAGGGCGCTGG 45013
||| || || |||| |||||| | | ||| || ||||| ||||| | | ||| ||||
Sbjct 20732 TGAAATTGACACAGGCCAAATGCAATCTGGTGAATGCTATCGAACGCAATAAGGCTCTGG 20673
Query 45014 CGTGGGTGGAGCGCAATATTAAAGTGCCGCTGACGGAACCACAGAAAGCAGGTATTGCTT 45073
| ||||| || ||||||||| || ||||| || ||||| |||||||| || || || |
Sbjct 20672 CATGGGTTGACCGCAATATTTCGGTACCGCTTACCGAACCGCAGAAAGCTGGAATCGCAT 20613
Query 45074 CTTTCTGCCCTTACAACATCGGCCCAGGAAAATGTTTCCCGTCTACGTTCTATAAGCGAA 45133
||||||| || ||||||||||| || || || || |||||||| |||||||||||||| |
Sbjct 20612 CTTTCTGTCCGTACAACATCGGGCCGGGTAAGTGCTTCCCGTCAACGTTCTATAAGCGCA 20553
Query 45134 TTAATGCTGGCGACCGTAAAGGAGCCTGTGAAGCTATTCGCTGGTGGATTAAAGACGGTG 45193
| ||||| || ||||| || || || || || |||||||||||||||| ||||| ||
Sbjct 20552 TCAATGCCGGTGACCGCCCCGGGGCATGCGAGGCAATTCGCTGGTGGATTAGAGACGCTG 20493
Query 45194 GCCGCGATTGTCGTCTGACCAAAGGCCAGAAAAATGGGTGCTATGGTCAGGTAGAGCGAC 45253
||||||| || || ||||| ||||||||||| || || ||||| ||||||||||| || |
Sbjct 20492 GCCGCGACTGCCGCCTGACTAAAGGCCAGAAGAACGGCTGCTACGGTCAGGTAGAACGGC 20433
Query 45254 GAGACCAGGAAAGCGCGTTGGCGTGCTGGGGGATTGACCA 45293
||||||||||||| || ||||||||||||||||| |||||
Sbjct 20432 GAGACCAGGAAAGTGCTTTGGCGTGCTGGGGGATAGACCA 20393
Score = 91.5 bits (100), Expect = 4e-14
Identities = 56/60 (93%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 5 CAGGTCTGACAATAAAGCAAGAGGCTTTCTGTCAGGCATACATCGAAACGGGTAATGCTT 64
||||||||||||| |||||||||||||||| || |||| |||||||||||||||||||||
Sbjct 16839 CAGGTCTGACAATTAAGCAAGAGGCTTTCTTTCTGGCACACATCGAAACGGGTAATGCTT 16780
Score = 89.7 bits (98), Expect = 2e-13
Identities = 115/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 45768 ACCACTACCACGGTAACGCCGTGAAATACAAAGAGCAGCGCGATACCGTTACTCATAAGC 45827
||||||| | || |||||| | | ||||||||||||||||||| | ||| | || |
Sbjct 18184 ACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGATAAAGCCACTGAGAAAC 18125
Query 45828 TGGCGCTGGCGAACGCGACAATTACCGACATGACGAAGCGTCAGCATGATGTTGCTGCGC 45887
| | ||| ||||| || || | |||||| || || |||| ||||| |||||||
Sbjct 18124 TCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGATGCCGCTGCGC 18065
Query 45888 TCGACGCCAGATACACGAAGGAATTAGCTGATGCGAAAG 45926
| || |||| |||||| ||| |||||||||||||
Sbjct 18064 TGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAG 18026
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 151411174305476
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |