Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_019545.1 Length=47355 Score E Sequences producing significant alignments: (Bits) Value seq997 625 9e-175 >seq997 Length=29618 Score = 625 bits (692), Expect = 9e-175 Identities = 652/852 (77%), Gaps = 3/852 (0%) Strand=Plus/Minus Query 41623 TAGGCCTGAACAACCTGCACCTGCTGCGCCACGGAGAACACCATGGCGCACGAATTACAA 41682 |||||||||||||||| ||||| ||||||||||||| |||||||||| ||||||||| Sbjct 24647 TAGGCCTGAACAACCTATACCTGATGCGCCACGGAGATAACCATGGCGCTAGAATTACAA 24588 Query 41683 CTCATCAAGCAGTCATCTGGAATTCTGATCCCCGCTACGCCGGAGACCAGCGAAATTCTG 41742 || || || || || ||||| |||||||| |||||||| ||||||||||| || ||| Sbjct 24587 CTTATAAAACACCACTCAGGAATACTGATCCCGGCTACGCCCGAGACCAGCGATATCCTG 24528 Query 41743 CAATCAAAAATTAAACTCGGTGCCGTGCTGGTGGCTGAGTTCCGCCAGGTGAGGAATCCT 41802 ||||| |||| ||||| | || || || || |||||| | | ||| | || || Sbjct 24527 CAATCTAAAACCCGGCTCGGCGATGTTCTTGTTGCCGAGTTCAGGCGGGTACGAAACCCG 24468 Query 41803 GCATTCCATCGCCGCTTTTTCGCGTTGCTTAATCTTGGGTTTGAATACTGGGAACCCACC 41862 |||||||| || |||||||| ||| | || ||||| || ||||||||||||||||| ||| Sbjct 24467 GCATTCCACCGGCGCTTTTTTGCGCTTCTCAATCTCGGTTTTGAATACTGGGAACCAACC 24408 Query 41863 GGCGGCGCCATTTCTGCCAACGAGCGCAAACTGGTAAACGGTTATGCAAAGTTTCTTGCT 41922 ||||| || |||||| ||||||||| || ||| | | ||| || || ||||| || ||| Sbjct 24407 GGCGGGGCTATTTCTAGCAACGAGCGGAAGCTGATTACCGGCTACGCCAAGTTCCTGGCT 24348 Query 41923 GCATATGGCGGGAATGAGGGCGCATTACTGGATGCGGCTGAACAGTATCTGGAACAGATT 41982 ||||||||||||| ||||| || | | ||||| || |||||||| ||||||||| || Sbjct 24347 TCATATGGCGGGAACGAGGGGGCTCTGATCGATGCTGCCGAACAGTACCTGGAACAGGTT 24288 Query 41983 GCAAACCGCCGGGTAACAAACGGGATTAGCCTGTGTAAATCTTTCGATGCATACCGCGCA 42042 || | || || || || || || ||||||||||| ||||| |||||||| |||||| || Sbjct 24287 GCTTATCGGCGTGTCACGAATGGCATTAGCCTGTGCAAATCCTTCGATGCTTACCGCTCA 24228 Query 42043 TGGGTGACGGTTGAGGCTGGTCACTATGACGCCATCCAGCTACCTGATGGCACCCTCCGC 42102 ||||||| |||||||| || |||| ||| ||||| ||||||||||| || || ||| Sbjct 24227 TGGGTGATCGTTGAGGCAGGGCACTTTGATGCCATTCAGCTACCTGACGGAACACTCAAA 24168 Query 42103 AAACATCCCCGCAGCATTGCTTTTTCCAGCATGGATGAGGTCGAATTTCAGCAGTTGTAT 42162 || ||||| || ||||| | || ||| |||||| ||| |||| || |||||| | ||| Sbjct 24167 AAGCATCCACGTAGCATCTCATTCGCCAACATGGACGAGCTCGAGTTCCAGCAGCTCTAT 24108 Query 42163 AAATCCGCGCTTGATGTGCTCTGGCGGTGGATTTTATCACGTACATTCCGTACTCAGTGC 42222 ||| | ||||| ||||| ||||| || ||| | | || ||| ||||||||| || ||| Sbjct 24107 AAAGCTGCGCTCGATGTTCTCTGACGCTGGGTCCTGTCGCGTTCATTCCGTAGTC-GTGA 24049 Query 42223 -GAGGCCGAGAACGCCGCCGCCCAGCTAATGAGCTTTGCGGGGTGATGGCGATGAAATAC 42281 ||||| || || | |||||| |||||| | |||||||||||||||| ||||| | Sbjct 24048 TGAGGCAGAAAATGTCGCCGCGCAGCTACTTGACTTTGCGGGGTGATGG-AATGAAGAAG 23990 Query 42282 TCCTGGTTCCATCATCACGACTGCACAACCGAGCAGGCCGATGAGCTGATGGCTCGGTAT 42341 |||||||||| || ||| |||| ||||| |||||||| || ||| | || || Sbjct 23989 ACCTGGTTCCACCACACCGATTGCAGCACCGAACAGGCCGACGAACTGGTTAAGCGTTAC 23930 Query 42342 CGGGCGCGCGGTGTCAAAACTGAGCGTAGCCTCAATCCGGATTACACCACCTGGACAGTT 42401 |||||||| || |||||| ||||| || ||||||||| |||||||| || Sbjct 23929 AAAGCGCGCGGCGTTCGGGTTGAGCGCAGCCTTAACCCGGATTACGTGACCTGGACTGTC 23870 Query 42402 AGCGCGTTTCTCCCTACCTCCAGCAAACCGGCCAGGCCGGATAACCGCTGGCGTAACCGG 42461 || || || || || ||||| | ||||| || | ||||| | ||||||||| |||||| Sbjct 23869 AGTGCATTCCTTCCGACCTCAAATAAACCAGCGCGCCCGGACAGCCGCTGGCGAAACCGG 23810 Query 42462 GTCTGGGGGTGA 42473 | ||||||||| Sbjct 23809 ATGTGGGGGTGA 23798 Score = 437 bits (484), Expect = 3e-118 Identities = 409/520 (79%), Gaps = 0/520 (0%) Strand=Plus/Minus Query 44774 CAAAGTTAAGTGCTGCCGTTCTGGGGCTGGTGCTTGCCGGTGCGTCTGCGTCAGTGATTC 44833 ||||| | ||| |||| |||||||||||||| | || ||||| |||| || || |||| Sbjct 20912 CAAAGCTGAGTACTGCAGTTCTGGGGCTGGTATTGGCTGGTGCTCCTGCATCCGTAATTC 20853 Query 44834 TCGACCAGTTTCTGGACGAAAAAGAAGGCAACCACACCACGGCATACCGAGATGGCTCCG 44893 |||| ||||||||| | |||||||| || ||| | |||||| ||| |||||| | Sbjct 20852 TCGATCAGTTTCTGAATGAAAAAGAGGGTAACAGCCTCACGGCCTACAAAGATGGTGGTG 20793 Query 44894 GCATATGGACCATCTGTCGCGGTGCCACAAAGGTGGACGGTAAACCCGTTGTTCGGGGCA 44953 | || ||||| || || ||||| || || | ||| || ||||||| ||||| | ||||| Sbjct 20792 GTATTTGGACTATTTGCCGCGGCGCAACGATGGTTGATCGTAAACCGGTTGTGCAGGGCA 20733 Query 44954 TGACGCTGTCAAAGGCGAAATGCGACCAGGTTAACGCTATTGAACGTGACAGGGCGCTGG 45013 ||| || || |||| |||||| | | ||| || ||||| ||||| | | ||| |||| Sbjct 20732 TGAAATTGACACAGGCCAAATGCAATCTGGTGAATGCTATCGAACGCAATAAGGCTCTGG 20673 Query 45014 CGTGGGTGGAGCGCAATATTAAAGTGCCGCTGACGGAACCACAGAAAGCAGGTATTGCTT 45073 | ||||| || ||||||||| || ||||| || ||||| |||||||| || || || | Sbjct 20672 CATGGGTTGACCGCAATATTTCGGTACCGCTTACCGAACCGCAGAAAGCTGGAATCGCAT 20613 Query 45074 CTTTCTGCCCTTACAACATCGGCCCAGGAAAATGTTTCCCGTCTACGTTCTATAAGCGAA 45133 ||||||| || ||||||||||| || || || || |||||||| |||||||||||||| | Sbjct 20612 CTTTCTGTCCGTACAACATCGGGCCGGGTAAGTGCTTCCCGTCAACGTTCTATAAGCGCA 20553 Query 45134 TTAATGCTGGCGACCGTAAAGGAGCCTGTGAAGCTATTCGCTGGTGGATTAAAGACGGTG 45193 | ||||| || ||||| || || || || || |||||||||||||||| ||||| || Sbjct 20552 TCAATGCCGGTGACCGCCCCGGGGCATGCGAGGCAATTCGCTGGTGGATTAGAGACGCTG 20493 Query 45194 GCCGCGATTGTCGTCTGACCAAAGGCCAGAAAAATGGGTGCTATGGTCAGGTAGAGCGAC 45253 ||||||| || || ||||| ||||||||||| || || ||||| ||||||||||| || | Sbjct 20492 GCCGCGACTGCCGCCTGACTAAAGGCCAGAAGAACGGCTGCTACGGTCAGGTAGAACGGC 20433 Query 45254 GAGACCAGGAAAGCGCGTTGGCGTGCTGGGGGATTGACCA 45293 ||||||||||||| || ||||||||||||||||| ||||| Sbjct 20432 GAGACCAGGAAAGTGCTTTGGCGTGCTGGGGGATAGACCA 20393 Score = 91.5 bits (100), Expect = 4e-14 Identities = 56/60 (93%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 5 CAGGTCTGACAATAAAGCAAGAGGCTTTCTGTCAGGCATACATCGAAACGGGTAATGCTT 64 ||||||||||||| |||||||||||||||| || |||| ||||||||||||||||||||| Sbjct 16839 CAGGTCTGACAATTAAGCAAGAGGCTTTCTTTCTGGCACACATCGAAACGGGTAATGCTT 16780 Score = 89.7 bits (98), Expect = 2e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 45768 ACCACTACCACGGTAACGCCGTGAAATACAAAGAGCAGCGCGATACCGTTACTCATAAGC 45827 ||||||| | || |||||| | | ||||||||||||||||||| | ||| | || | Sbjct 18184 ACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGATAAAGCCACTGAGAAAC 18125 Query 45828 TGGCGCTGGCGAACGCGACAATTACCGACATGACGAAGCGTCAGCATGATGTTGCTGCGC 45887 | | ||| ||||| || || | |||||| || || |||| ||||| ||||||| Sbjct 18124 TCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGATGCCGCTGCGC 18065 Query 45888 TCGACGCCAGATACACGAAGGAATTAGCTGATGCGAAAG 45926 | || |||| |||||| ||| ||||||||||||| Sbjct 18064 TGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAG 18026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151411174305476