Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_019706.1
Length=42780
Score E
Sequences producing significant alignments: (Bits) Value
seq1547 197 4e-46
seq997 118 3e-22
seq1102 105 2e-18
>seq1547
Length=4346
Score = 197 bits (218), Expect = 4e-46
Identities = 285/398 (72%), Gaps = 3/398 (1%)
Strand=Plus/Minus
Query 19862 GATTGATCGTTTTTAGCGATCAATAACATAATATTGATCTATCCAATCAATTATACCCAC 19921
||||||||||||| |||||||||| || | ||||||||| ||||||||||| ||
Sbjct 596 GATTGATCGTTTTCAGCGATCAATCTTATGAAATTGATCTACAGAATCAATTATATCCCT 537
Query 19922 CAGAATTGTATTGGTATCGTCTAAGATACTGAATTCCTCTGG-ATACTATCAAAATGAGA 19980
|| | | ||| ||| || ||| | ||||| | ||||| ||| | || |||| |
Sbjct 536 TTGATTCATCTTGTTATTGTTTAACCTCTTGAAT-CTTCTGGGATATAACCACTATGAAA 478
Query 19981 AAACTGATTATCTGCATGGCAGGCGCTGTCATGCTTACAGGATGCGCTGGCGTAATTGAG 20040
| ||||| | ||| |||| | |||| |||| | || ||||||||||| || ||
Sbjct 477 TACATGATTCTTTGCCTGGCGGTGGCTGCATTGCTCTCTGGTTGCGCTGGCGTTCTTCAG 418
Query 20041 AAACAGGAACCAGTTTGCAGCGGCACTGCAATCGTTGGCGGTCAGGAAACTACGGTTCAG 20100
|| ||| | || | || | ||| || || | | ||||| ||||| | | || |||
Sbjct 417 AAGCAGCATCCCATATGTACCGGAACGGCCCTGATCGGCGGACAGGAGAACATCGTCCAG 358
Query 20101 ATTTACGGTGTGCGTAAACAAAACAACCAGACGCAGTACCGGGCTGGATATCCTTTCAGC 20160
|||||||| ||||| || |||| || ||||| |||||||| || || || || || | |
Sbjct 357 ATTTACGGAGTGCGGAAGCAAAGTAATCAGACCCAGTACCGCGCCGGTTACCCATTTAAC 298
Query 20161 TGGCGCTGGGTAAGTGCGAATACATTTACCGAAACAACCTGCAAATAACCCACTACGCTT 20220
||| ||||| ||||| || || || | | || |||||| |||| | || | | ||
Sbjct 297 TGGAATTGGGTTAGTGCCAACACGTTCATCAGCACCACCTGCCAATAGCTCATTCTGTTT 238
Query 20221 AAACATAAACCTCGCTCCGGCGGGGtttttttATTGCC 20258
|| | ||||||||||||||||||| ||||||||||||
Sbjct 237 CAAAACAAACCTCGCTCCGGCGGGG-TTTTTTATTGCC 201
>seq997
Length=29618
Score = 118 bits (130), Expect = 3e-22
Identities = 296/453 (65%), Gaps = 24/453 (5%)
Strand=Plus/Minus
Query 40745 ATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCAGCCTGTCA 40804
|||||| || |||||||||| |||| |||| | ||||||||| | | ||| || |
Sbjct 18254 ATGAGCTGATTAACCGCGATCATCTGCGCTGTCGTTATCTGCCTGCTGGTCTTTATGGCT 18195
Query 40805 TGGGCGGTTAATCATTACCGTGATAACGCCATTACCTATAAAGAACAGCGCGATAAGGCC 40864
|||||| |||| || || || || |||||||| ||||| ||||| ||||||||||| |||
Sbjct 18194 TGGGCGATTAACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGATAAAGCC 18135
Query 40865 GC------ATT---------------CATTATCGCTGACATGCAGAAACGTCAACGCAAT 40903
| | | || ||| |||||||||| || || || ||
Sbjct 18134 ACTGAGAAACTCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGAT 18075
Query 40904 GTAGCAGAACTCGACGCCAGATATACAAAGGAGCTTGCTGATGCTAACGCGACTATCGAA 40963
| || | || || |||| ||| || || | |||||||| || | | || ||
Sbjct 18074 GCCGCTGCGCTGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAGATATCATTGAG 18015
Query 40964 AGTCTCCGTGCTGATGTTTCTGCTGGTCGTAAGCGCATGCAAGTCGCCGCCACCTGT--- 41020
|||| | | ||||| |||||| |||||||| |||| || ||| | ||||
Sbjct 18014 CGTCTGCATAGCGATGTCATTGCTGGCCGTAAGCGGCTGCAGCTCAACGCAAACTGTCCC 17955
Query 41021 GCAAAGTCAACGACCGGAGCCAGCAGCATGGGCGATGGAGAAAGCCCAAGACTTACAGCA 41080
|| || | ||||||| || || |||||||||||| |||| |||||||| |
Sbjct 17954 GCGAACGGAGCGACCGGCACCGGCGGCATGGGCGATGCTTCCGGCCCCAGACTTACTGAC 17895
Query 41081 GATGCTGAACTCAATTATTACCGTCTACGAAGTGGAATCGACAGGATAACCGCGCAGGTT 41140
||||||| |||||| | || ||| |||||| || | || ||||||
Sbjct 17894 TCCGCTGAACGGGATTATTTCATCCTCAGAAAGCGAATCGTCACAGTGACGAAGCAGGTC 17835
Query 41141 AACTACCTGCAGGAGTACATCAGGACGCAATGC 41173
||| |||||| | ||||| || || || |||
Sbjct 17834 GGCTATCTGCAGAACTACATAAGCACTCAGTGC 17802
>seq1102
Length=22075
Score = 105 bits (116), Expect = 2e-18
Identities = 61/63 (97%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 22032 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTAAATCAATGAG 22091
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 2274 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATCTAAATCAATAAG 2215
Query 22092 TTA 22094
|||
Sbjct 2214 TTA 2212
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 136771486192376
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |