Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_019706.1 Length=42780 Score E Sequences producing significant alignments: (Bits) Value seq1547 197 4e-46 seq997 118 3e-22 seq1102 105 2e-18 >seq1547 Length=4346 Score = 197 bits (218), Expect = 4e-46 Identities = 285/398 (72%), Gaps = 3/398 (1%) Strand=Plus/Minus Query 19862 GATTGATCGTTTTTAGCGATCAATAACATAATATTGATCTATCCAATCAATTATACCCAC 19921 ||||||||||||| |||||||||| || | ||||||||| ||||||||||| || Sbjct 596 GATTGATCGTTTTCAGCGATCAATCTTATGAAATTGATCTACAGAATCAATTATATCCCT 537 Query 19922 CAGAATTGTATTGGTATCGTCTAAGATACTGAATTCCTCTGG-ATACTATCAAAATGAGA 19980 || | | ||| ||| || ||| | ||||| | ||||| ||| | || |||| | Sbjct 536 TTGATTCATCTTGTTATTGTTTAACCTCTTGAAT-CTTCTGGGATATAACCACTATGAAA 478 Query 19981 AAACTGATTATCTGCATGGCAGGCGCTGTCATGCTTACAGGATGCGCTGGCGTAATTGAG 20040 | ||||| | ||| |||| | |||| |||| | || ||||||||||| || || Sbjct 477 TACATGATTCTTTGCCTGGCGGTGGCTGCATTGCTCTCTGGTTGCGCTGGCGTTCTTCAG 418 Query 20041 AAACAGGAACCAGTTTGCAGCGGCACTGCAATCGTTGGCGGTCAGGAAACTACGGTTCAG 20100 || ||| | || | || | ||| || || | | ||||| ||||| | | || ||| Sbjct 417 AAGCAGCATCCCATATGTACCGGAACGGCCCTGATCGGCGGACAGGAGAACATCGTCCAG 358 Query 20101 ATTTACGGTGTGCGTAAACAAAACAACCAGACGCAGTACCGGGCTGGATATCCTTTCAGC 20160 |||||||| ||||| || |||| || ||||| |||||||| || || || || || | | Sbjct 357 ATTTACGGAGTGCGGAAGCAAAGTAATCAGACCCAGTACCGCGCCGGTTACCCATTTAAC 298 Query 20161 TGGCGCTGGGTAAGTGCGAATACATTTACCGAAACAACCTGCAAATAACCCACTACGCTT 20220 ||| ||||| ||||| || || || | | || |||||| |||| | || | | || Sbjct 297 TGGAATTGGGTTAGTGCCAACACGTTCATCAGCACCACCTGCCAATAGCTCATTCTGTTT 238 Query 20221 AAACATAAACCTCGCTCCGGCGGGGtttttttATTGCC 20258 || | ||||||||||||||||||| |||||||||||| Sbjct 237 CAAAACAAACCTCGCTCCGGCGGGG-TTTTTTATTGCC 201 >seq997 Length=29618 Score = 118 bits (130), Expect = 3e-22 Identities = 296/453 (65%), Gaps = 24/453 (5%) Strand=Plus/Minus Query 40745 ATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCAGCCTGTCA 40804 |||||| || |||||||||| |||| |||| | ||||||||| | | ||| || | Sbjct 18254 ATGAGCTGATTAACCGCGATCATCTGCGCTGTCGTTATCTGCCTGCTGGTCTTTATGGCT 18195 Query 40805 TGGGCGGTTAATCATTACCGTGATAACGCCATTACCTATAAAGAACAGCGCGATAAGGCC 40864 |||||| |||| || || || || |||||||| ||||| ||||| ||||||||||| ||| Sbjct 18194 TGGGCGATTAACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGATAAAGCC 18135 Query 40865 GC------ATT---------------CATTATCGCTGACATGCAGAAACGTCAACGCAAT 40903 | | | || ||| |||||||||| || || || || Sbjct 18134 ACTGAGAAACTCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGAT 18075 Query 40904 GTAGCAGAACTCGACGCCAGATATACAAAGGAGCTTGCTGATGCTAACGCGACTATCGAA 40963 | || | || || |||| ||| || || | |||||||| || | | || || Sbjct 18074 GCCGCTGCGCTGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAGATATCATTGAG 18015 Query 40964 AGTCTCCGTGCTGATGTTTCTGCTGGTCGTAAGCGCATGCAAGTCGCCGCCACCTGT--- 41020 |||| | | ||||| |||||| |||||||| |||| || ||| | |||| Sbjct 18014 CGTCTGCATAGCGATGTCATTGCTGGCCGTAAGCGGCTGCAGCTCAACGCAAACTGTCCC 17955 Query 41021 GCAAAGTCAACGACCGGAGCCAGCAGCATGGGCGATGGAGAAAGCCCAAGACTTACAGCA 41080 || || | ||||||| || || |||||||||||| |||| |||||||| | Sbjct 17954 GCGAACGGAGCGACCGGCACCGGCGGCATGGGCGATGCTTCCGGCCCCAGACTTACTGAC 17895 Query 41081 GATGCTGAACTCAATTATTACCGTCTACGAAGTGGAATCGACAGGATAACCGCGCAGGTT 41140 ||||||| |||||| | || ||| |||||| || | || |||||| Sbjct 17894 TCCGCTGAACGGGATTATTTCATCCTCAGAAAGCGAATCGTCACAGTGACGAAGCAGGTC 17835 Query 41141 AACTACCTGCAGGAGTACATCAGGACGCAATGC 41173 ||| |||||| | ||||| || || || ||| Sbjct 17834 GGCTATCTGCAGAACTACATAAGCACTCAGTGC 17802 >seq1102 Length=22075 Score = 105 bits (116), Expect = 2e-18 Identities = 61/63 (97%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 22032 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTAAATCAATGAG 22091 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 2274 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATCTAAATCAATAAG 2215 Query 22092 TTA 22094 ||| Sbjct 2214 TTA 2212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136771486192376