Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_019716.1 Length=44510 Score E Sequences producing significant alignments: (Bits) Value seq997 316 6e-82 seq960 89.7 1e-13 >seq997 Length=29618 Score = 316 bits (350), Expect = 6e-82 Identities = 381/514 (74%), Gaps = 13/514 (3%) Strand=Plus/Minus Query 42754 CTGCTGTTCTGGCGCTG--ATTGCTGCAGGCGCGTCTGCTCCTCAAATCCTTGACCAGTT 42811 |||| ||||||| |||| |||| || || || |||| | ||| || || ||||| Sbjct 20900 CTGCAGTTCTGGGGCTGGTATTG--GCTGGTGCTCCTGCATCCGTAATTCTCGATCAGTT 20843 Query 42812 TCTTGATGAAAAAGAGGGTAACCACACTACGGCATACCGCGATGGTTCCGGTATATGGAC 42871 ||| ||||||||||||||||| | ||||| ||| |||||| ||||| ||||| Sbjct 20842 TCTGAATGAAAAAGAGGGTAACAGCCTCACGGCCTACAAAGATGGTGGTGGTATTTGGAC 20783 Query 42872 CATCTGTCGTGGTGCCACAATGGTGGATGGTAAGCCCGTCATACCGGGAATGAAGCTGTC 42931 || || || || || || ||||| ||| |||| || || | | ||| ||||| || | Sbjct 20782 TATTTGCCGCGGCGCAACGATGGTTGATCGTAAACCGGTTGTGCAGGGCATGAAATTGAC 20723 Query 42932 GAAGGAAAAATGCGACCAGGTTAACGCTATTGAACGTGATAAGGCGCTGGCATGGGTGGA 42991 ||| |||||| | | ||| || ||||| ||||| ||||||| ||||||||||| || Sbjct 20722 ACAGGCCAAATGCAATCTGGTGAATGCTATCGAACGCAATAAGGCTCTGGCATGGGTTGA 20663 Query 42992 GCGCAATATTAAAGTACCACTGACCGAACCACAGAAAGCGGGTATAGCGTCATTTTGTCC 43051 ||||||||| ||||| || |||||||| |||||||| || || || || || ||||| Sbjct 20662 CCGCAATATTTCGGTACCGCTTACCGAACCGCAGAAAGCTGGAATCGCATCTTTCTGTCC 20603 Query 43052 CTATAACATTGGCCCCGGTAAGTGTTTCCCGTCGACGTTTTATAAGCGGCTGAATGCCGG 43111 || ||||| || || |||||||| |||||||| ||||| |||||||| | |||||||| Sbjct 20602 GTACAACATCGGGCCGGGTAAGTGCTTCCCGTCAACGTTCTATAAGCGCATCAATGCCGG 20543 Query 43112 TGATCGTAAGGGTGCATGTGAGGCGATTCGCTGGTGGATAAAAGATGGTGGGCGCGATTG 43171 ||| || || ||||| ||||| |||||||||||||| | ||| | ||| ||||| || Sbjct 20542 TGACCGCCCCGGGGCATGCGAGGCAATTCGCTGGTGGATTAGAGACGCTGGCCGCGACTG 20483 Query 43172 CCGCAT-----ACGTTCA-AATAA---CTGCTATGGACAGGTTATTCGTCGTGACCAGGA 43222 |||| | | | || || || |||||| || ||||| || || |||||||| Sbjct 20482 CCGCCTGACTAAAGGCCAGAAGAACGGCTGCTACGGTCAGGTAGAACGGCGAGACCAGGA 20423 Query 43223 AAGCGCATTAGCCTGTTGGGGGATAGATGAGTGA 43256 ||| || || || || ||||||||||| ||||| Sbjct 20422 AAGTGCTTTGGCGTGCTGGGGGATAGACCAGTGA 20389 Score = 134 bits (148), Expect = 4e-27 Identities = 169/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 43254 TGAGCAGAGTCGCCGCGATTATTTATGCTCTGGTTATCTGCATCATCGTCTGCCTGTCGT 43313 ||||| || | ||||||| || | ||| | ||||||||| | | |||| || | | Sbjct 18253 TGAGCTGATTAACCGCGATCATCTGCGCTGTCGTTATCTGCCTGCTGGTCTTTATGGCTT 18194 Query 43314 GGGCGGTCAATCATTACCGTGATAACGCCATCGCCTACAAAGAACAGCGTGATAAAAAAG 43373 ||||| | || || || || || ||||||||| |||||||||| ||||| |||||| | Sbjct 18193 GGGCGATTAACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGATAAA---G 18137 Query 43374 TCAGTGAG---CTGAAGCAGGCGACCGCCACCATTACTGACATGCAGCAACGCCAGCGTG 43430 || |||| || | ||||| | ||||||||| | ||||||||| |||||||||| Sbjct 18136 CCACTGAGAAACTCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTG 18077 Query 43431 CTGCTGATGTACTCGATGCTAAATACACGAAGGAGTTGGCTGATGCGAAAG 43481 ||| | || || ||||| |||||||| || |||||||||||||| Sbjct 18076 ATGCCGCTGCGCTGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAG 18026 >seq960 Length=33163 Score = 89.7 bits (98), Expect = 1e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 15709 TACAGCGGTATCTGGGACGGAACGTTTAAGCCAGCATACAGCAACAACATGGCCTGGTGT 15768 |||||||| | |||||||| || || ||| | || | | | ||||| ||||||| | Sbjct 13079 TACAGCGGCGTGTGGGACGGCACCTTCAAGTCGGCCTGGACCGACAACCCGGCCTGGA-T 13137 Query 15769 CTG-TGGGATATGCTGACCCACCCGCGCTACGGCATGGGTAAACGTCTTGGTGCGGCAGA 15827 || | || ||||| |||| ||| || ||| | || | | || || || | Sbjct 13138 CTACTACGACCTGCTGCTGCACCAGCGTTATGGCCTCGGGCACCTGCTCAACGCCGCCCA 13197 Query 15828 TGTGGATAAATGGGCGCTGTATGTCATCGGCCAGTGTTGCGACCAGTCGGTGCCGGACGG 15887 ||||| || |||| |||||| ||||||||||| ||||||||| ||||| | || || Sbjct 13198 GGTGGACAAGTGGGAGCTGTACCGCATCGGCCAGTACTGCGACCAGCCGGTGTCCGATGG 13257 Query 15888 TTTTGGCGGCACGGAGCCGCGCATCACCTGTAA 15920 |||||||| ||||||||| | ||||| || Sbjct 13258 CAAGGGCGGCACCGAGCCGCGCTTTACCTGCAA 13290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142307368254816