Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_019768.1 Length=41468 Score E Sequences producing significant alignments: (Bits) Value seq1547 1635 0.0 seq997 468 1e-127 >seq1547 Length=4346 Score = 1635 bits (1812), Expect = 0.0 Identities = 1533/1939 (79%), Gaps = 15/1939 (1%) Strand=Plus/Minus Query 14941 AAACGACGTCTGGTTATGAGCGCAGCCACCGTATCGATTTACCGCAGGCTGGCAGCACCT 15000 |||| || ||||||||||| |||||||||||||| |||||||| ||||| |||||||||| Sbjct 4346 AAACCACCTCTGGTTATGAACGCAGCCACCGTATTGATTTACCTCAGGCGGGCAGCACCT 4287 Query 15001 GGACAATACGTCTGCGTAAGATTACCTCTGACGCCAACAGCGCGAAGATCGGCGACACGA 15060 |||| || | ||||| || ||||| | || ||||| ||||||||||| |||||||||| Sbjct 4286 GGACCATCAGGCTGCGCAAAATTACAGCCGATGCCAATAGCGCGAAGATTGGCGACACGA 4227 Query 15061 TGATGCTGCAGAGCTTCACCGAGGTGATTGACGCCAAACTGCGCTACCCGAACACCGCGC 15120 ||| |||||| ||||||||||| || || ||||||||||| ||||| ||||||||||||| Sbjct 4226 TGACGCTGCAAAGCTTCACCGAAGTAATCGACGCCAAACTTCGCTATCCGAACACCGCGC 4167 Query 15121 TGCTCTACGTCGAATTCGACTCAAGCCAGTTCAACGGCTCTATTCCTCAAATTTCATGCG 15180 | || ||| ||||||| || || ||||||||||| ||||| ||||| |||||||| |||| Sbjct 4166 TACTGTACATCGAATTTGATTCGAGCCAGTTCAATGGCTCAATTCCGCAAATTTCCTGCG 4107 Query 15181 AACCGCGCGGCCGCGTTATCCGCGTTCCAGATACCTACGACCCTGAAACCCGCACTTATA 15240 | || ||||| || ||||| || || || |||||||| ||||| ||||| || || || | Sbjct 4106 AGCCTCGCGGACGTGTTATTCGTGTGCCCGATACCTATGACCCGGAAACACGAACGTACA 4047 Query 15241 GCGGTACATGGACCGGTGCGTTTAAGTGGGCATGGACGGATAACCCTGCGTGGATTTTTT 15300 |||| || ||||| || || ||||||||||||||||||||||||||||||||||| |||| Sbjct 4046 GCGGCACCTGGACGGGCGCATTTAAGTGGGCATGGACGGATAACCCTGCGTGGATATTTT 3987 Query 15301 ACGACCTGGTTGTTTCTGACCGGTTCGGCCTTGGGCACCGTTTGACCGCTGCGAATATTG 15360 |||| ||||| || ||||||| ||||||||||| | || | || || || || || | Sbjct 3986 ACGATCTGGTGGTCACTGACCGCTTCGGCCTTGGTAATCGGCTAACGGCAGCCAACATCG 3927 Query 15361 ATAAATGGACGCTTTATCAGGTTGCTCAGTATTGTGATCAGATGGTACCAGACGGCAAAG 15420 | |||||||| ||||||||||| ||||| ||||||||||| |||||| || || || | Sbjct 3926 ACAAATGGACTCTTTATCAGGTCGCTCAATATTGTGATCAATCGGTACCGGATGGTAAGG 3867 Query 15421 GGGGCAACGGTACAGAACCACGTTATACCTGCAACGTGTACATTCAGGACCGGAACGACG 15480 | |||| ||| || ||||||||||| ||||||||||| |||||||| || || || |||| Sbjct 3866 GCGGCAGCGGAACTGAACCACGTTACACCTGCAACGTATACATTCAAGATCGAAATGACG 3807 Query 15481 CCTACACAGTCCTGCGTGATTTTGCCGCTATCTTCCGTGGCATGACCTACTGGGGCGGGG 15540 | ||||| |||||||| ||||||||||| || || || ||||||||||||||||| | | Sbjct 3806 CTTACACCGTCCTGCGAGATTTTGCCGCCATTTTTCGAGGCATGACCTACTGGGGAGACG 3747 Query 15541 ATCAGATTGTGGCCCTGGCTGACATGCCGCGCGATGTTGATTACAGCTATACGCGCGCTA 15600 | |||||||| ||||| || |||||||| | ||||| |||| | ||| |||| ||||| Sbjct 3746 ACCAGATTGTTGCCCTTGCAGACATGCCCAGAGATGTCGATTTTACCTACACGCACGCTA 3687 Query 15601 ACGTTGTTGGCGGTCGCTTCACCTATTCGAGCAGCACCACGAAAAGCCGCTACACCACAG 15660 |||| || | ||| || ||||| || ||||| || ||||| |||||||| | | Sbjct 3686 ACGTAGTCGACGGCAAATTTGTGTATTCCAGTAGCACAACTAAAAGTCGCTACACAAACG 3627 Query 15661 CGCTGGTTTCATGGTCAGACCCGGGTAACGCTTATGCCGACGCGATGGAGCCGGTATTTG 15720 | || || || ||||| || |||| || | ||||| || || |||||||| || || | Sbjct 3626 CTCTTGTATCCTGGTCTGATCCGGCAAATGGCTATGCTGATGCAATGGAGCCAGTCTTCG 3567 Query 15721 AGCAGGCGCTGGTGGCGCGGTACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCA 15780 | |||| |||||||||||| || || ||||| ||||| || || || |||||||| |||| Sbjct 3566 AACAGGAGCTGGTGGCGCGCTATGGTTTCAACCAGCTCGAGATCACCGCCATCGGTTGCA 3507 Query 15781 CCAGGCAGTCAGAGGCGAACCGAAAGGGGCGCTGGGGTATTCTCACCAATAACAAGGATC 15840 || ||||||| ||||| ||| | || ||||||||||| || || ||||| || || ||| Sbjct 3506 CCCGGCAGTCTGAGGCTAACAGGAAAGGGCGCTGGGGGATCCTGACCAACAATAAAGATA 3447 Query 15841 GCGTTGTTTCGTTTGATGTCGGGCTGGACGGAAACATTCCGCAGCCGGGCTACATCATCG 15900 | |||| ||||||| || || |||||||| || ||||| |||||||||||||| || | Sbjct 3446 GGATTGTAACGTTTGACGTTGGTCTGGACGGTAATATTCCTCAGCCGGGCTACATAATTG 3387 Query 15901 CCGTGGCAGA-CGAGCTGCTTTCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAAC 15959 | || | || ||| | ||||| |||| | | | ||||| || | ||| ||||| Sbjct 3386 CTGTTTCTGATCGAAAT-CTTTCAGGAAGAGATTTAGGCGGTCGATTATCCGCGGTTAAT 3328 Query 15960 GGTCGCGTTATCAAACTTGACCGCGTAGCTGATGCAGCACCAGGTGATCGCCTTATTCTC 16019 || || ||| ||||||||||||| ||| | ||| | ||||| | | || | Sbjct 3327 GGGCGTGTTCTCAAACTTGACCGGGTACCAAGTGCTAAGGCCGGTGACAGGATAATGGTA 3268 Query 16020 AACCTACCTTCCGGAGCGTCGCAGAGCAGGACCATTCAGGCCGTGAACGGGGAATCAGTC 16079 ||||| || || || | || | | || |||||| || || ||| ||| ||| Sbjct 3267 AACCTGCCATCGGGTATCACTCAATCCCGAACGATTCAGTCCCTGTCCGGTGAAATGGTC 3208 Query 16080 ACAGTCACCACGGCATACAGTGAGACGCCACAGGCCGAAGCTGTTTGGGTGGTTGAATCT 16139 || || ||||| || | || ||| ||||||||||| ||||| ||||| |||||||| Sbjct 3207 ACCGTGACCACCGCTTTTAGCGAGCTTCCACAGGCCGAGGCTGTATGGGTTATTGAATCT 3148 Query 16140 GACGAGCTTTACGCGCAGCAGTATCGTGTTGTCAGCGTCTCCGACAACGGTGATGGCACT 16199 || || || || ||||||||||| | || | || ||| |||| ||| ||| || ||| Sbjct 3147 GATGAACTCTATGCGCAGCAGTACAGGGTAATTAGTGTCACCGATAACAATGACGGGACT 3088 Query 16200 TTCTCAATCACCGGCGCATGGCACGACCCGGATAAATATGCCCGCATCGATACCGGAGCC 16259 | | ||||| || ||| ||||| |||||||||| | ||||| |||||||||||| Sbjct 3087 TATACCATCACGGGGGCAAATCACGATCCGGATAAATTCGATCGCATTGATACCGGAGCC 3028 Query 16260 ATCATTGACCAGCGGCCGGTGAGCGTGATCCCGCCTGGTAACCAGTCGCCGCCTGCGAAC 16319 || |||||||||||||||||||||||||||||||| || ||||||||||||||||| ||| Sbjct 3027 ATGATTGACCAGCGGCCGGTGAGCGTGATCCCGCCGGGCAACCAGTCGCCGCCTGCAAAC 2968 Query 16320 ATCGTGATCAGCTCGTTTTCCGTGGTTCAGCAAAATATCAGCGTCGAAACAATGCGCGTG 16379 |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 2967 ATCGTGATCAGCTCGTTTTCCGTGGTGCAGCAAAATATCAGCGTCGAAACGATGCGCGTG 2908 Query 16380 AGCTGGGACCAGGCGCAGAACGCTATCGCCTATGAAGCGCAATGGCGCCGCAACGACGGG 16439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2907 AGCTGGGACCAGGCGCAGAACGCTATCGCCTATGAAGCGCAATGGCGCCGCAACGAGGGG 2848 Query 16440 AACTGGGTTAACGTGCCGCGCACCTCCACCACGTCATTCGACGTCCCGGGGATTTATGCC 16499 |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| || Sbjct 2847 AACTGGGTTAACGTGCCGCGCAGCTCCACCACGTCATTCGACGTTACGGGGATTTATTCC 2788 Query 16500 GGGCGCTACCTGGTGCGGGTGCGCGCAATCAATGCCGCAGAAATTTCATCCGGATGGGGC 16559 ||||| ||||||||||| ||||| || ||||| || || |||||||| ||||||||||| Sbjct 2787 GGGCGGTACCTGGTGCGCGTGCGTGCTATCAACGCAGCGGAAATTTCTTCCGGATGGGGA 2728 Query 16560 TATTCAGAAGAGAAAACGCTGACGGGTAAAGTGGGCAATCCACCGAAGCCTGTTGGCTTT 16619 |||||||||||||| ||| |||| || ||||||||||||||||| ||||| || || || Sbjct 2727 TATTCAGAAGAGAAGACGTTGACCGGCAAAGTGGGCAATCCACCTAAGCCAGTAGGATTC 2668 Query 16620 ATCGCCTCTG--AAAACGTGGTGTTCGGTATCGAGCTGAACTGGGGATTCCCGGCGAATA 16677 | |||| | | | | ||| || || || |||||||| |||||||| || | Sbjct 2667 ACCGCCACGGGCATTAACTGG-----GGGATTCGTCTTAACTGGGGTTTCCCGGCAAACA 2613 Query 16678 CCGACGACACGCTGAAGACGGAAATTCAGTACA-GCCTGACCGGTACTGAAGACGATGCC 16736 ||| ||| ||||| || |||||||||||||||| | || | ||| | ||| || Sbjct 2612 CCGGCGATACGCTAAAAACGGAAATTCAGTACACAGCAAACAGTGACTTTTCA-GAT-CC 2555 Query 16737 ATGC-TGCTGGCCGATGTGCCTTA-CCCGCAGCGCAAATATCAGCAGATGGGCCTTAAGG 16794 || | |||| | || |||||||| || | ||| |||| ||| | |||||||| | Sbjct 2554 ATTCTTGCTCTCAGACGTGCCTTATCCATCTGCG-GAATACACCCAGCTCGGCCTTAAAG 2496 Query 16795 CTGGGCAGATTTTCTGGTACCGCGCGCAGCTGGTTGACCGCAGCGGTAACGAGTCAGGTT 16854 | |||||| |||||||||||||| ||||| || ||| | | ||||||||||| || | Sbjct 2495 CAGGGCAGGAATTCTGGTACCGCGCACAGCTTGTCGACAGAACGGGTAACGAGTCCGGGT 2436 Query 16855 ATACCGGCTGGGTTCGTGG 16873 |||||| |||| | || || Sbjct 2435 ATACCGACTGGATCCGGGG 2417 Score = 185 bits (204), Expect = 2e-42 Identities = 228/308 (74%), Gaps = 3/308 (1%) Strand=Plus/Minus Query 19019 TGAATACCTCTGG-ATACTATCAAAATGAAAAGGCTAATTATCTGCATAGCGGGCGCTTT 19077 ||||| | ||||| ||| | || |||||| | ||| | ||| | |||| ||| Sbjct 507 TGAAT-CTTCTGGGATATAACCACTATGAAATACATGATTCTTTGCCTGGCGGTGGCTGC 449 Query 19078 AATGCTGTCTGGTTGCGCTGGTGTACTTGAGAAACAGAAACCGATTTGCAGCGGCACGGC 19137 | |||| |||||||||||||| || ||| |||| ||| | || || || | ||| ||||| Sbjct 448 ATTGCTCTCTGGTTGCGCTGGCGTTCTTCAGAAGCAGCATCCCATATGTACCGGAACGGC 389 Query 19138 ATATATGGGTGGCCATGAGAATACCGTTATGATTTACGCCGTTCGAAAGCAAAACAACCA 19197 || || || || ||||| | ||| |||||||| || || ||||||| || || Sbjct 388 CCTGATCGGCGGACAGGAGAACATCGTCCAGATTTACGGAGTGCGGAAGCAAAGTAATCA 329 Query 19198 GACGCAATACCGGGCCGGATATCCCTTTAACTGGCGCTGGGTAAGTGCGAACACATTCAC 19257 ||| || ||||| ||||| || || ||||||||| ||||| ||||| ||||| |||| Sbjct 328 GACCCAGTACCGCGCCGGTTACCCATTTAACTGGAATTGGGTTAGTGCCAACACGTTCAT 269 Query 19258 AAGCACGACATGTAAATAACTCATGAT-TTTCAATGCAAACCTCGCCTCGGCGGGGTTTT 19316 ||||| || || |||| ||||| | |||||| |||||||||| |||||||||||| Sbjct 268 CAGCACCACCTGCCAATAGCTCATTCTGTTTCAAAACAAACCTCGCTCCGGCGGGGTTTT 209 Query 19317 TTATTGCC 19324 |||||||| Sbjct 208 TTATTGCC 201 Score = 156 bits (172), Expect = 1e-33 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 17766 TTCATCCAGGACGGCACTATCAGCAACGCAAAGATTGGTAATTTTATCCAGTCGAACAAT 17825 || || ||||| ||||| |||| ||| || || || || | || |||||||| || || Sbjct 1846 TTTATTCAGGATGGCACGATCACCAATGCCAAAATCGGCGACTTCATCCAGTCCAATAAC 1787 Query 17826 TATGTTGCTGGTTCTGCTGGCTGGAAGCTTGATAAAGGGGGGACGTTTGAGAACTACGGT 17885 || |||||||| |||| || |||| ||| |||||| || || || |||||||||||| Sbjct 1786 TACGTTGCTGGGTCTGTCGGATGGAGGCTGGATAAATCAGGAACATTCGAGAACTACGGT 1727 Query 17886 TCGACTGCTGGTGAGGGAGCCATGAAACTGACAAATCAGACGATCAGCGTCAAAGATGGC 17945 ||||| | ||| |||||||||||||||| |||||| ||||| ||||| || || | | Sbjct 1726 TCGACAGTTGGAGAGGGAGCCATGAAACAGACAAACCAGACAATCAGTGTGCGTGACGCC 1667 Query 17946 AGTAATGTTCTTAGGGTGCAGGTTGGCCGATTAACGGGA 17984 | ||||| | ||||||||| | || || | |||||| Sbjct 1666 AACAATGTGTTGAGGGTGCAGATCGGGAGAATCACGGGA 1628 >seq997 Length=29618 Score = 468 bits (518), Expect = 1e-127 Identities = 575/785 (73%), Gaps = 3/785 (0%) Strand=Plus/Minus Query 11961 AAGCAACATTCATCCAGGCATTTAAACCATGAGCTTAAACGCAGATTATCAGAAGCTGGA 12020 ||||||| |||| ||||||| ||||||| | | | ||||||||| || || Sbjct 785 AAGCAACCTTCAAACAGGCATACGCACCATGA---TTACTGAAGATTATCAACGCCTCGA 729 Query 12021 ATCCGGAAACGATGTTCGTCTGATTGAGGTGGACGGTTCTTCCTTTGGGCTAACGGACGT 12080 | | || || | | ||||| ||||||| ||||||||| | ||||| || ||||| Sbjct 728 ACCGGGTAAAAAAATACGTCTTCTTGAGGTAGACGGTTCTGCGTTTGGTCTGGACGACGT 669 Query 12081 TCTCCGCTTTCACAATTACAGCATTCCCCACACAGAAGCGGAAATCATCGCCGCTGGTGG 12140 ||| ||||||||| ||| | | | || || || | || || || || |||||||| Sbjct 668 TCTGCGCTTTCACGCTTATAACCTCCCGCATACTGCAGAAGAGATTGCGGCTGCTGGTGG 609 Query 12141 GGATGAGTCCAAGCTTCCGGCGAAACCAATCTGGTGGCAGGGAAATGAATACGCCGCCTG 12200 || || || ||| | |||||| |||||||||||||| | || || | ||||| Sbjct 608 CGACGAATCAAAGTTAAAGGCGAAGAGTATCTGGTGGCAGGGCGAAGAGTATGGTGCCTG 549 Query 12201 GCCGTATCAGCTGGAAGGTCTGGAGAAATCAACCAGTGGGAGCAATGCAACGCCATCACT 12260 ||| ||| |||| || || ||||| ||| || ||| || | || ||| | || Sbjct 548 GCCATATAAGCTCGAGGGACTGGAAGCGTCATCCGATGGCAGTAGCGCCCAGCCGACGCT 489 Query 12261 GACGGTTGCGAACATCGAAAGCTCCATTTCTGCTCTGTGTCTTGCGTATGACGATCTGCT 12320 || ||||| ||||| || ||||| || |||| || ||||| || ||||||||| |||| Sbjct 488 CACCGTTGCCAACATTGACAGCTCTATCACTGCGCTCTGTCTGGCCTATGACGATATGCT 429 Query 12321 GCAGGCTAAAGTCACTATTCACGACACAAAAGAGAAATATCTCGATGCCAGGAATTTCGC 12380 |||||| ||||| || ||||| ||||| | | | || || ||||| | |||||| | Sbjct 428 GCAGGCCAAAGTTACGATTCATGACACTTTTGCGCATTACCTGGATGCGCGCAATTTCCC 369 Query 12381 AGACGGTAACCCTTCTGCAGACCAGACTCAGGAAAAGCTGCAGGTCTGGTATATCGACGG 12440 || || || || | ||||| | |||| | || ||| | ||||||||||| Sbjct 368 GGATGGAAATCCAACAGCAGATCCCTTGCAGGTGAGAAAGCGGGTTTTCTATATCGACGG 309 Query 12441 GAAAACGGGCGAGCTTGCCGGTGAAACCGTTGAATTTGTTCTGTCCAGCCCGATGGACCT 12500 |||| |||||||| ||||||||| | || |||||||| | ||||||||||| || Sbjct 308 TAAAAATAGCGAGCTTCCCGGTGAAAGTATCGAGTTTGTTCTTACAAGCCCGATGGATCT 249 Query 12501 GCAGGGGCAAATGATCCCGACGCGACAGCTTCATTCCCTGTGTACCTGGTGCATCCGGAA 12560 |||||| ||||| ||||| ||||| | |||||||| || || |||||||||||||| Sbjct 248 GCAGGGATTGATGATTCCGACCAGACAGTTGCATTCCCTTTGCACATGGTGCATCCGGAA 189 Query 12561 TAAATATCGCACCGGCGACGGCTGCGACTATGCCGGCACCCGCTATTTCGACAAAAACAA 12620 || || ||||||||||| || ||||| ||||||||||| | || ||||||| |||||| Sbjct 188 TAGGTACCGCACCGGCGATGGGTGCGATTATGCCGGCACGCTTTACTTCGACAGAAACAA 129 Query 12621 CAACCCGGTAAGCGATCCGTCGCTGGATGAATGCAACGGCACGCTGACGGCCTGCAAACT 12680 ||| |||||||||||||| || |||||||||||||||||||||| || |||||||| || Sbjct 128 CAATCCGGTAAGCGATCCCTCATTGGATGAATGCAACGGCACGCTCACCGCCTGCAAGCT 69 Query 12681 CCGATTCGGCGAAAATAACGAACTCTCGTTTGGTGGCTTCCCGGGCACGTCTTTGATCAG 12740 || || || ||| | || ||||| | || ||||| || || || || ||||||||||| Sbjct 68 TCGGTTTGGTGAACACAATGAACTTCCTTTCGGTGGTTTTCCAGGAACATCTTTGATCAG 9 Query 12741 GAGTT 12745 ||||| Sbjct 8 GAGTT 4 Score = 95.1 bits (104), Expect = 3e-15 Identities = 209/313 (67%), Gaps = 3/313 (1%) Strand=Plus/Minus Query 39265 GATATGCAGAAGCGTCAACGTGACGTAGCAGAACTCGATGCCAGATATACAAAGGAGCTT 39324 || ||||||| || || ||||| | || | || ||||||| ||| || || | Sbjct 18098 GACATGCAGACCCGCCAGCGTGATGCCGCTGCGCTGGATGCCAAATACACTGGAGAACCG 18039 Query 39325 GCTGATGCTAACGCGACTATCGAAAGTCTCCGTGCTGATGTTTCTGCTGGTCGTAAGCGC 39384 |||||||| || | | || || |||| | | ||||| |||||| |||||||| Sbjct 18038 GCTGATGCGAAAGATATCATTGAGCGTCTGCATAGCGATGTCATTGCTGGCCGTAAGCGG 17979 Query 39385 CTGCAAGTCGCCGCCACCTGT---GCAAAGTCAACGACCGGAGCCAGCGGCATGGGCGAT 39441 ||||| || ||| | |||| || || | ||||||| || |||||||||||||| Sbjct 17978 CTGCAGCTCAACGCAAACTGTCCCGCGAACGGAGCGACCGGCACCGGCGGCATGGGCGAT 17919 Query 39442 GGAGAAAGCCCAGGACTTACAGCAGATGCTGAACTCAATTATTACCGTCTCCGAAGTGGA 39501 | |||| ||||||| | ||||||| |||||| | ||| ||| || Sbjct 17918 GCTTCCGGCCCCAGACTTACTGACTCCGCTGAACGGGATTATTTCATCCTCAGAAAGCGA 17859 Query 39502 ATCGACAGGATAACCGCGCAGGTTAACTACCTGCAGGAGTACATCAGGACGCAATGCCTG 39561 |||| || | || |||||| ||| |||||| | ||||| || || || ||| | Sbjct 17858 ATCGTCACAGTGACGAAGCAGGTCGGCTATCTGCAGAACTACATAAGCACTCAGTGCTTA 17799 Query 39562 AAATAAttttttt 39574 |||||| ||||| Sbjct 17798 AAATAAAGTTTTT 17786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132573175634040