Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_019927.1 Length=47611 Score E Sequences producing significant alignments: (Bits) Value seq986 841 0.0 seq1102 98.7 3e-16 >seq986 Length=30461 Score = 841 bits (932), Expect = 0.0 Identities = 929/1235 (75%), Gaps = 2/1235 (0%) Strand=Plus/Plus Query 6010 TTTCTTCACCTTTAAAATATATCGAGGGCGCTGCTTAACCTCAGTGTAAATTCTTCCAAT 6069 ||| || ||||||| | || ||||| || ||| || | ||||| |||||||| Sbjct 11740 TTTGTTACCCTTTAACAGGTAGCGAGGCCGTCCCTTGCTTTCGATATAAATCCTTCCAAT 11799 Query 6070 ATATTCCCCCAGGACACCTATCCCTATAAGCTGGACGCCGCCAAGGAAAAGGATAGAAAC 6129 || || || || ||||| || || ||||| || || || |||||||||||||| || || Sbjct 11800 GTACTCTCCGAGCACACCAATGCCGATAAGTTGCACACCACCAAGGAAAAGGATGGAGAC 11859 Query 6130 CAGAAGGGATGGATATCCGCGAACCGGGTTGCCAAAGGCAAGCGTGTCGACAATCATCCA 6189 || | || ||||| || || || | |||||||| || || ||||| ||||||||||| Sbjct 11860 AAGTAATGACGGATAGCCACGCACAGCATTGCCAAAAGCCAGAGTGTCTACAATCATCCA 11919 Query 6190 CGCTCCATAGAGAAATGACAGCCCGGCCACTAACAA-CCCAATGTACGTCCACATTCTCA 6248 || ||||||||||||| || || || || ||||| ||| || || |||||||| | || Sbjct 11920 TGCGCCATAGAGAAATGCGAGACCTGCAAC-AACAAGCCCGATATAGGTCCACATGCGCA 11978 Query 6249 GAGGAAAGGTCGAGAAGCTGGTAATACCCTCAAGCGCGAGATTCCAGAGTTTCCACCCGT 6308 |||| ||||| ||||| ||||| ||||||||||| || || ||||| | ||||| || | Sbjct 11979 GAGGGAAGGTAGAGAAACTGGTGATACCCTCAAGAGCAAGGTTCCATAACTTCCAACCAT 12038 Query 6309 TAAATTTGGTGCTTCCTGCCACGCGTTCAGCGCGCGAATACTCAACTACGTCAGTGCGTC 6368 ||||||| || || ||||| |||||||||||||| | ||| ||||| || || ||||| | Sbjct 12039 TAAATTTTGTACTGCCTGCAACGCGTTCAGCGCGGGCATATTCAACAACATCCGTGCGAC 12098 Query 6369 CGCCGACCCATGACAGGACTCCTTTCATGAACAGGTTCCGCTCAGGCATTAGCTTGATGT 6428 | || ||||| ||| ||||| |||||||| ||||| | ||| ||||| |||||||||| Sbjct 12099 CACCAACCCAGCTCAGAACTCCCTTCATGAAGAGGTTTCTCTCTGGCATGAGCTTGATGT 12158 Query 6429 TTTCTACTACCTCACGAGACATCAGGCGAAAATCACCCACGTTTTCCTCGATTTGTGGGT 6488 |||| || |||||||| |||||||| || |||||||| || ||||||||||| || |||| Sbjct 12159 TTTCGACCACCTCACGGGACATCAGACGGAAATCACCGACATTTTCCTCGATCTGCGGGT 12218 Query 6489 TGCTTATTTTGTTGTGCAGCTTATAGAACATTTCAGCGCTTTTGCGCTTCAGGTGACCGT 6548 | || ||||||||||||| |||||||||| || || ||| || ||||| ||| | Sbjct 12219 TACTGATTTTGTTGTGCAACTTATAGAACCACTCGGCAGATTTACGTTTCAGACGACTAT 12278 Query 6549 CAGTGGAGCGGTCTGTGCGTTTAGCCAGTACCATATCTGCGCCAGTCTGCCAGCGCTGTA 6608 ||||||||||||| | ||| || ||||||||||| || || || | |||||| || || Sbjct 12279 CAGTGGAGCGGTCAGAGCGCTTGGCCAGTACCATGTCGGCCCCGGCCTGCCATTTCTCTA 12338 Query 6609 TCAACTGCGGGATAACATCAATTGGGTCCTGCAGGTCGACGTCGATTGGAATCACCGCCT 6668 ||| ||||| || || |||||||||||||||| ||| ||||| || || || | || | Sbjct 12339 TCAGATGCGGAATGACCTCAATTGGGTCCTGCAAGTCTACGTCAATCGGGATAATTGCTT 12398 Query 6669 CGCCGGTGGCATGGTCAAGGCCTGCAAATAACGCTGGCTCCTTTCCGAAATTGCGTGTGA 6728 | || || || ||||| ||||| || ||||| || ||||| ||||| || ||||| |||| Sbjct 12399 CACCTGTAGCGTGGTCTAGGCCGGCGAATAAAGCAGGCTCTTTTCCAAAGTTGCGGGTGA 12458 Query 6729 AGGATAGGGGCACAACAAGCGGATCTGACACGGCCAGCGCATTGATAATCGACTCTGTAG 6788 |||| || || || ||||||||||||| | || ||||| || ||||| || || || | Sbjct 12459 AGGAAAGAGGAACCACAAGCGGATCTGCAATAGCAAGCGCGTTTATAATTGATTCGGTCG 12518 Query 6789 CGTCTTTGCTGCCGTCATTGATAAATACGATTTCCACCTCAAACGATTTGAGCGGTTCAT 6848 | |||||||| ||||||||||| || || || || || || | || | | |||| Sbjct 12519 CATCTTTGCTACCGTCATTGATGAAGACTATCTCAACTTCCTGCTGCTTTAACCCTTCAA 12578 Query 6849 ATTCTCTGACGGTTTTATAGAAAATAGGTATTGTGTCTTCTTCATTGAAGACAGGAACCA 6908 | || | |||| ||| ||||| || || |||| || |||||||| || || ||||| | Sbjct 12579 ACTCCCGCACGGCTTTGTAGAAGATTGGAATTGCTTCCTCTTCATTAAACACCGGAACGA 12638 Query 6909 CGAGTGAAATCTTCATTTTGCTTCCCTGAAGACAATGTATTTCGAATAGATAAACCCGCA 6968 | || ||||| ||||||| || ||||| ||||||||| | || |||||||| || ||||| Sbjct 12639 CCAGAGAAATTTTCATTTCGCATCCCTAAAGACAATGAACTTTGAATAGATGAAGCCGCA 12698 Query 6969 CACCAGGCTGATTGCCGAGAACACGACCAGCGTAACCACGGGTGGTAGAGAGCATTCATC 7028 |||||| ||||| || ||||| |||| | ||||| | || | || ||| || Sbjct 12699 CACCAGACTGATGGCGGAGAAAACGATTAACGTAATAATCGGGGCAAGCCCTGATTTGTC 12758 Query 7029 GGCAGCCCATCCCACAGCCGCGCTAAGAGAACCCATGAAACCTACGTAAAGCATGTAGCG 7088 ||| ||| || || || ||||| || | |||||| || ||||| || ||||||||||| Sbjct 12759 AGCACACCAACCAACGGCGGCGCTCAGCGTACCCATAAACCCTACATACAGCATGTAGCG 12818 Query 7089 CGTCGTGGTTGTAGAACTGTTGAACGTAAAGCGAGCGTTTGCAAAGAAGCTAAAGCTTAC 7148 | | || ||||||||| || || || || | |||||||| || |||||||| || Sbjct 12819 CATGGTCGTTGTAGAAGACTTAAAGGTGAACCTGGCGTTTGCGAAAAAGCTAAATGACAC 12878 Query 7149 CGCAACAACGAATCCGCTGAAGTTCGCCAGCGCCTGGCTGGTTCCTAATGCATAGAAGCA 7208 |||||| || |||||| |||||| ||||| || || | || || | || | | Sbjct 12879 CGCAACTACAAATCCGGCGAAGTTAGCCAGAGCTTGCCCTGTGTGGAAGACGTAAATAGA 12938 Query 7209 CGCGGCAAATACCACCCAATGGATTAGCGTGTTGA 7243 ||| || || ||||| || || |||||||||| Sbjct 12939 AATGGCGAACACAACCCAGTGAATGAGCGTGTTGA 12973 >seq1102 Length=22075 Score = 98.7 bits (108), Expect = 3e-16 Identities = 60/64 (94%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 7474 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAATTAAATCAAGAAC 7533 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 2274 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATCTAAATCAATAAG 2215 Query 7534 TTAT 7537 |||| Sbjct 2214 TTAT 2211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152230356853444