Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq754 168 1e-36 seq861 87.8 3e-12 >seq754 Length=71200 Score = 168 bits (186), Expect = 1e-36 Identities = 226/311 (73%), Gaps = 4/311 (1%) Strand=Plus/Plus Query 122360 ACCATGAAACAATATCTGGACTTACTGCGTGACGTTCGTGACAACGGGCACGA--AAAAG 122417 ||||||||||| ||||| || || || | || | || | ||||||| |||| Sbjct 66013 ACCATGAAACAGTATCTTGAATTGATGAAAAAAGTGCTCGATGA-GGGCACGCCGAAAAA 66071 Query 122418 CAGACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGC 122477 | |||||||| ||||| || || || || | || ||| || |||||||| | | | Sbjct 66072 C-GACCGTACCGGCACCGGTACGCTCTCCATTTTTGGCCACCAGATGCGCTTCAATTTAC 66130 Query 122478 AAAAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGC 122537 | |||| ||||| ||||| ||||| || || || ||||| ||||| ||||| | Sbjct 66131 AGGAAGGCTTCCCTCTGGTGACGACTAAGCGCTGCCATCTGCGCTCGATCATTCATGAAC 66190 Query 122538 TTCTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTA 122597 | || |||||||| |||||||||||| | ||||||| | || ||||||||| | Sbjct 66191 TGCTCTGGTTCCTGCAAGGCGATACCAACGTTGCGTATCTGCACGAAAACAACGTCTCCA 66250 Query 122598 TCTGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGC 122657 ||||||| ||||||||||||||| | || || || |||||||| ||||| ||||| |||| Sbjct 66251 TCTGGGACGAATGGGCAGATGAAAACGGCAACCTGGGCCCGGTTTACGGCAAGCAGTGGC 66310 Query 122658 GTGAGTGGCCA 122668 | | |||||| Sbjct 66311 GCGCATGGCCA 66321 Score = 104 bits (114), Expect = 4e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 122789 ATCGACCAAATCAGCAAGGTCATGGAACAACTGAAAAACGACCCGGACAACCGCCGTATC 122848 || ||||| |||| || || ||| | || ||||||||||| || ||| ||||| ||| Sbjct 66340 ATTGACCAGATCACCACCGTGATGAACCAGCTGAAAAACGATCCAGACTCGCGCCGAATC 66399 Query 122849 ATCGTCAGTGCCTGGAACGTGGCTGACCTGGATGAAATGGCGTTAGCACCATGCCATGCC 122908 || || ||||||||||| | || ||||| |||||||| | ||||| ||||| || Sbjct 66400 ATTGTTTCCGCCTGGAACGTCGGCGAGCTGGACAAAATGGCGCTGGCACCGTGCCACGCG 66459 Query 122909 TTCTTCCAGTTCTAC 122923 ||||||||||||||| Sbjct 66460 TTCTTCCAGTTCTAC 66474 Score = 95.1 bits (104), Expect = 2e-14 Identities = 140/197 (71%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 123074 TCCTGTCAGCTGTATCAGCG---CAGTGCTGACATGTTCCTAGGCGTACCGTTTAACATT 123130 ||||| ||||| || ||||| | ||| || ||||||| ||| | |||||||||||| Sbjct 66493 TCCTGCCAGCTCTACCAGCGTTCCTGTGATG---TGTTCCTCGGCCTGCCGTTTAACATT 66549 Query 123131 GCCTCTTACGCGCTCCTGATACACATGTTTGCCCAGCAGGCCAATATGGCAGTAGGTGAC 123190 ||| || ||||| | | || ||| | || |||||| | ||| ||| || || Sbjct 66550 GCCAGCTATGCGCTGTTAGTCCATATGATGGCGCAGCAGTGTGACCTGGAAGTGGGGGAT 66609 Query 123191 TTCGTGTGGACGGGTGGGGATGTGCATCTGTACTCCAACCACCTGGAGCAGGCAGATTTG 123250 || || ||||| |||||||| ||||| ||| |||||| |||||||| | || | Sbjct 66610 TTTGTCTGGACCGGTGGGGACACCCATCTCTACAGCAACCATATGGAGCAGACCCATCTC 66669 Query 123251 CAGTTAACTCGCGAACC 123267 ||| | || |||||||| Sbjct 66670 CAGCTGACCCGCGAACC 66686 >seq861 Length=45456 Score = 87.8 bits (96), Expect = 3e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 167024 TAGGGGCATAGCTCAGCTGGCAGAGCACCGGTCTCCAAAACCGGGTGTCCAAGGTTCGAA 167083 ||||||| |||||||| ||| |||||||||||||||||||||||||||| |||||| Sbjct 17968 TAGGGGCGTAGCTCAGTTGGTAGAGCACCGGTCTCCAAAACCGGGTGTCGCGAGTTCGAG 17909 Query 167084 TCCTTGTGCCCCTGCCAAATTTA 167106 || | |||||||||| || || Sbjct 17908 TCTCTCCGCCCCTGCCATATATA 17886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 777614561602400