Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq197 89.7 4e-13 >seq197 Length=620651 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || ||||| | || || || || |||||| ||| |||| | ||| Sbjct 449564 ATGCAGATTTTCGTGAAAACCCTGACTGGCAAGACAATTACCCTGGAAGTGGAAGCCTCA 449505 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| || ||| |||||||||||| | ||| ||| || Sbjct 449504 GACACAATTGAGAATGTGAAGGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGACCAG 449445 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| | |||||||| |||||||| ||||| ||| || || | || || ||| Sbjct 449444 CAGAGGTTGATCTTTGCAGGCAAACAGTTGGAGGATGGCCGCACCCTGTCTGACTACAAC 449385 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 || || ||||| || || |||||| |||| Sbjct 449384 ATCCAGAAAGAGTCCACCCTGCACTTGGT 449356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425395498789926