Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_020080.1 Length=174413 Score E Sequences producing significant alignments: (Bits) Value seq236 183 3e-41 seq637 136 4e-27 seq962 127 2e-24 >seq236 Length=545527 Score = 183 bits (202), Expect = 3e-41 Identities = 152/186 (82%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 50851 GTGGAAGGTGGACAGCATTTAAACGTAAACGTGTTGCGCCGCGAAACTCTCCTGGATGCG 50910 ||||||||||| ||||| | ||||||||||| ||||||||||||| || |||| ||| Sbjct 30710 GTGGAAGGTGGTCAGCACCTTAACGTAAACGTACTGCGCCGCGAAACGCTGATGGACGCG 30769 Query 50911 GTTGAACATCCTGAAAAATACCCACAGTTAACGATCCGTGTTTCTGGTTATGCAGTGCGT 50970 ||||| || || ||||||||||| ||| | || || || || ||||||||||| || || Sbjct 30770 GTTGAGCACCCAGAAAAATACCCGCAGCTGACCATTCGCGTGTCTGGTTATGCGGTACGC 30829 Query 50971 TTTAACTCACTGACCCCTGAACAGCAACGCGACGTTATCGCCAGAACCTTTACAGAGAGT 51030 || ||||| |||||||| |||||||| |||||||||||||| | |||||||| || || Sbjct 30830 TTCAACTCTCTGACCCCAGAACAGCAGCGCGACGTTATCGCGCGTACCTTTACTGAAAGC 30889 Query 51031 CTATAA 51036 || ||| Sbjct 30890 CTGTAA 30895 >seq637 Length=122170 Score = 136 bits (150), Expect = 4e-27 Identities = 158/212 (75%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 50854 GAAGGTGGACAGCATTTAAACGTAAACGTGTTGCGCCGCGAAACTCTCCTGGATGCGGTT 50913 |||||||| ||||| | ||||| ||||| || ||| |||| || || |||||| | Sbjct 107288 GAAGGTGGTCAGCACCTGAACGTGAACGTAATGAACCGTGAAATGCTGCTCGATGCGATG 107229 Query 50914 GAACATCCTGAAAAATACCCACAGTTAACGATCCGTGTTTCTGGTTATGCAGTGCGTTTT 50973 ||||||||||| ||||| || ||| | || |||||||| ||||| || ||||| |||||| Sbjct 107228 GAACATCCTGAGAAATATCCTCAGCTGACCATCCGTGTATCTGGCTACGCAGTACGTTTT 107169 Query 50974 AACTCACTGACCCCTGAACAGCAACGCGACGTTATCGCCAGAACCTTTACAGAGAGTCTA 51033 ||||| ||||| |||||||| | ||||||||| || | || || || || | Sbjct 107168 AACTCCCTGACTAAAGAACAGCAGCAGGACGTTATCACCCGTACTTTCACTCAGTCCATG 107109 Query 51034 TAATGGCAATTGA-TGATATCAAGGGTTATAA 51064 ||| | |||||| ||| |||| | |||| || Sbjct 107108 TAAGTGGAATTGACTGAAATCACGCGTTAAAA 107077 >seq962 Length=32987 Score = 127 bits (140), Expect = 2e-24 Identities = 752/1186 (63%), Gaps = 53/1186 (4%) Strand=Plus/Minus Query 152156 CAACGAAAACGCAAACAAAGATTCTCGCGTATTCCCGACTAAACGCGATCTTCTGGCGGG 152215 ||| |||||||| |||||||| | || |||| || | |||||||| ||||| || Sbjct 25741 CAATGAAAACGCCAACAAAGACAGTAAAGTGATCCCCACCCAGCGCGATCTGCTGGCCGG 25682 Query 152216 TATCGTTTCTAAACA-TATGGCGCGTAACCATATTCTACCGAAACATATTGTAGAGGCGC 152274 |||||| | ||||| |||| | ||| | || | || ||| || | || |||| Sbjct 25681 TATCGTCGCCAAACACTATGCC-CGTCAGCACCTGCTGCCGCGCGATGTGGTCTCAGCGC 25623 Query 152275 ATGATTCCGGTGATATTCATTATCACGATCTGGATTACAGCCCGTTCACCCC-ATACACT 152333 | || |||||| || || ||||||||||| || || |||||| ||| || | Sbjct 25622 ACGAGCGCGGTGAGATCCACTATCACGATCTCGACTATTCACCGTTCTTCCCGATGTTC- 25564 Query 152334 AACTGCTGTCTTGTTGACCTAAAAGGCATGTTAGAAAACGGGTTCCGTATGGGTAACGCT 152393 ||||| || ||||||| ||||||||| | ||||||| ||||||||||| Sbjct 25563 AACTGTATGCTGATTGACCTGAAAGGCATGCTGACCCACGGGTTTAAAATGGGTAACGCC 25504 Query 152394 GATATCGAACCGCCTAAATCAATCGGTGTTGCTACTGCTCTTATGGCTCAGATCACCGCA 152453 || || |||||||| ||||| ||| || ||||| | | ||| ||||| | ||| Sbjct 25503 GAGATTGAACCGCCAAAATCCATCTCCACCGCCACTGCGGTCACGGCACAGATTATCGCC 25444 Query 152454 CAGATTGCTTCTCACCAGTACGGCGGGACAACCTTTGCAAATG--TCGATCAGGTGCTGG 152511 ||| | || ||| |||||||| || ||| || || | | || | ||||||| Sbjct 25443 CAGGTCGCCAGCCACATTTACGGCGGCACCACCATT--AACCGCATTGACGAAGTGCTGG 25386 Query 152512 CCCCTTACGTTGAAATGACG-TACAACAAACACTTTAAAGATGCTGTTTGGTACGGGGTT 152570 |||| | | ||| | | | |||||| ||| ||| || | || | | Sbjct 25385 CCCCGTTTG-TGACCGCAAGCTTCAACAAGCACCGCAAAACGGCCGAAGAGTGGCAGATC 25327 Query 152571 CCTAAATCAAAACAGTATGCG--ATGGAAAAAACAGAAAAGGATGTATTCGATGCGTTCC 152628 || | | | |||||| | | | ||||| | ||| || ||||||| Sbjct 25326 CCGGACGCCGACGGCTATGCGCACTCGCGCACTGAGAAAGAGTGCTAT--GACGCGTTCC 25269 Query 152629 AGTCATACGAATATGAAGTAAACACCTTACATACTGCAAATGGACAGACGCCTTTTGTCA 152688 |||| || ||||| || || ||| | ||||| || || || |||||||| ||||| | Sbjct 25268 AGTCGCTGGAGTATGAGGTGAATACCCTGCATACCGCCAACGGCCAGACGCCGTTTGTGA 25209 Query 152689 CAATCACTTTCGGTATGGGTACTGGTTGGCGCGAA---CGCATGATCCAGAAAGCGATTC 152745 | || ||| || |||| || | ||| ||| || |||||||| | | || | Sbjct 25208 CCTTCGGTTTTGGCCTGGGCACCAGCTGG---GAATCGCGTTTGATCCAGCAGTCCATCC 25152 Query 152746 TGAAAAACCGTATTCGTGGACTGGGTAAAAAAGGCATTACCCCTGTATTCCCAAAACTGG 152805 || |||||||| || || ||||| || ||| || | || ||||| ||||||| Sbjct 25151 TGCGCAACCGTATCTCCGGCCTCGGTAAGAACCGCAAAACGGCGGTGTTCCCGAAACTGG 25092 Query 152806 TTATGTTTATGGAAAAAGGGATTAACCTTAATCCGGAAGACAGAAACTATGATATTAAGA 152865 | | || | ||| | |||| || | || || || || || || Sbjct 25091 TATTCGCCATCCGCGACGGGCTGAACCACAAAGTTGGCGATCCGAATTACGACATCAAAC 25032 Query 152866 AATTGGCCCTGGAATGTGCTTCAAAGCGTATGTATCCGGATATTATTAGCGCGGCTAATA 152925 | |||| ||||| || || ||||| ||||| ||||||||| | | | | | | Sbjct 25031 AGCTGGCGCTGGAGTGCGCGAGCAAGCGCATGTACCCGGATATTCTGAACTACGATCA-- 24974 Query 152926 ACCGTCGTA----TTACTGGCTCTAGCATTCCTGTATCTCCTATGGGTTGTCGTAGTTTC 152981 |||||| | || || | |||| | | | || |||||||| || || ||| Sbjct 24973 --GGTCGTAAAAGTAACCGGGT----CATT--TAAAACGCCAATGGGTTGCCGCAGCTTC 24922 Query 152982 CTTAGCGTGTGGAATGATGAGCACGGTAATGAAATTCTTGATGGACGTAATAACCTGGGC 153041 || |||| | | ||||| |||| | | || | || || ||||| ||||| ||| Sbjct 24921 CTCGGCGTATACGAAGATGAAAACGGCGAGCAGATCCACGACGGGCGTAACAACCTCGGC 24862 Query 153042 GTTGTGACAATCAACCTTCCTCGTATTGCGATTGAAGCCGAAGCACAGGAAGATGAAGAC 153101 || | | | ||||| || || || ||| | || ||| ||| || ||||| Sbjct 24861 GTCATCAGCCTGAACCTGCCGCGCATCGCGCTGGAGGCCAAAG-GCA-----ATGAA--- 24811 Query 153102 GCGCATGATGCATTTTGGCGTATCCTTGATGAACGTCTGGAACTGTGCTTTGAA-GCCCT 153160 | || ||| ||| | || |||||||| ||| | ||| || || || || Sbjct 24810 ------GCTGAATTCTGGACACTGCTGGATGAACGCCTGCAGCTG-GCGCGCAAGGCGCT 24758 Query 153161 GATGACTCGTATTGATAGTCTCAGAGGTGTTAAAGCCAGTGTAGCCCCGATCCTTTATAC 153220 |||||| ||||| | | || ||| || |||||| | || || || ||||| |||| Sbjct 24757 GATGACCCGTATCGCCCGCCTTGAAGGGGTAAAAGCCCGCGTGGCGCCTATCCTCTATAT 24698 Query 153221 AGAAGGTGCGTTTGGTGTACGGTTGAAACCCGATGATGAAAT-TCTGGAACTGTTCAAAA 153279 ||||| || | || || || ||||| | || ||||| | ||| || | ||||||| Sbjct 24697 GGAAGGGGCCTGCGGCGTGCGCCTGAAAGCGGACGATGACGTCTCT-GAGATCTTCAAAA 24639 Query 153280 ATGGGCGTAGTTCTATCAGTCTGGGATACATCGGATTGCATGAAAC 153325 | || || || || ||||| || ||||| | |||||||| Sbjct 24638 ACGGCCGCGCGTCGATTTCGCTGGGCTATATCGGCATCCATGAAAC 24593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557981086993520