Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_020083.1 Length=157834 Score E Sequences producing significant alignments: (Bits) Value seq974 118 1e-21 >seq974 Length=31311 Score = 118 bits (130), Expect = 1e-21 Identities = 243/357 (68%), Gaps = 6/357 (2%) Strand=Plus/Minus Query 106056 TCTGCCGACCCCGATCATGGCTGGCGTCCGTACCCGTACCCGTCAGTTCAGCTCCTGTGT 106115 |||||| || || |||||| ||||||| || |||| |||||||||||||||||||| || Sbjct 360 TCTGCCTACGCCAATCATGTCTGGCGTGCGCACCCCAACCCGTCAGTTCAGCTCCTGCGT 301 Query 106116 GCTGATCAAAGTCGGCGACACGCTGGACTCTATCAAGGCCGCAGGCTCTGCTATCGTTGA 106175 |||||| | || |||| ||||| || ||||| ||| | | || ||||| | Sbjct 300 ACTGATCGAGTGTGGTGACAGCCTGGATTCCATCAACGCCACGTCCAGCGCCATCGTGAA 241 Query 106176 CTATGTCAGCAAGCGCGCAGGCATCGGTCTGGACGTGGGGGAGATTCGTGCCCTCGGTGC 106235 || || | |||| || || ||||| | ||| || || ||||| || || Sbjct 240 ATACGTTTCCCAGCGTGCCGGTATCGGCATCAACGCCGGTCGCATCCGTGCGCTGGGCAG 181 Query 106236 TCCTATCCGTGGCGGTGAGATGGAGCATACCGGAACTATCCCATTCATCAAGAAGTTC-- 106293 || || || |||||||| || ||||| |||||| ||| ||| | ||| Sbjct 180 CCCGATTCGCGGCGGTGAAGCATTCCACACCGGCTGTATCCCGTTCTATAAGCACTTCCA 121 Query 106294 GTCGGTGACCTGAAGAGCTGCTCTCAGGGTGGGGTTCGCGGCGGCTCTATGACTGCCTAC 106353 | ||| | | || |||||||||||| || || |||||||| || ||| | | Sbjct 120 GACGGCG--GTAAAATCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCTGCGACCCTGTTC 63 Query 106354 TATCCGATGTGGCACCT-GCAGTTCCCAGCCATGATTGTTCTGAAGAATAACCGTGG 106409 || || ||||||||||| | ||| |||| || | || ||||| || |||||||| Sbjct 62 TACCCTATGTGGCACCTGGAAGTGGAAAGCC-TGCTGGTCCTGAAAAACAACCGTGG 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504929476702560