Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq486 241 2e-58 >seq486 Length=217039 Score = 241 bits (266), Expect = 2e-58 Identities = 1055/1639 (64%), Gaps = 38/1639 (2%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| | |||||||| | |||||||||||||| | ||||| || | | | Sbjct 176518 CCGCAGCACATGCTGATGCGGGTGTCCATCGGCATCCACGGCGCCGACATCGACGCCGCC 176459 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | || ||| || | | ||| | | ||| |||| ||||| | || ||||| || Sbjct 176458 ATCACCACCTACAACCTGCTCTCCGAGAAGTAC-TTCACGCACGCCAGCCCCACCCTGTT 176400 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 | || | || || | || ||| | ||| || ||||| ||||||| ||||| || Sbjct 176399 CTCGGCCGCCACCCCCCGCCCTCAGCTCTCCTCATGTTTCCTCATCGCCATGAAGGACGA 176340 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 | ||| | |||||||| | ||||| | | ||||||| ||| || || | || || Sbjct 176339 CAGCATCGAAGGTATCTACGACACTCTGAAGCAGTGTGCATTAATATCCAAATCCGCGGG 176280 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-ACA 75508 || || || | || | ||| | ||||| || | | | || ||| ||| || Sbjct 176279 CGGCATAGGAGTTCATGTTCATTGCATCAGAGCGAA--AGGCACCTACATCGCGGGCACG 176222 Query 75509 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 75568 || || || | || | | || ||||| ||||| | ||| ||| |||||||| Sbjct 176221 AACGGCGTCTCCAACGGGCTGGTGCCCATGCTGCGCGTGTACAACAACACGGCGCGCTAC 176162 Query 75569 GTAAATCAAGCGGGGCGTCG-CAAGGGGTCCA------TCGCGGTCTACTTGGAACCATG 75621 || | || ||||| | |||| || || |||| |||||| | || || || Sbjct 176161 GTGGACCA----GGGCGGCAACAAGCGGCCCGGCGCCTTCGCCGTCTACCTCGAGCCGTG 176106 Query 75622 GCATGCCGATATCATGGAGTTCCTTGAGTT-ACGACTCAACCAAGGTGACGAAGAGGCTC 75680 ||| || || || | |||||||| || || | || ||| || | || || | | Sbjct 176105 GCACGCTGACATATTCGAGTTCCTAGACTTGAAGAAG-AACACGGGCAAAGAGGAAGTGC 176047 Query 75681 GGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGG 75740 | |||| || || | | |||||||| |||| || ||||||||| |||||||| Sbjct 176046 GCGCGCGAGAGCTGTTCTATGCTCTGTGGATCTCAGATCTATTCATGAAGAGGGTTGAGA 175987 Query 75741 AGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGG 75800 | | | ||| ||| | || || || | || || | | || || Sbjct 175986 ACAACGAGGAGTGGAGCCTTATGTGCCCTCACGACAGCCCTGGCTTGGCTGATTGTTGGG 175927 Query 75801 GTGAGGAGTTTGAAGCCCTCTA-CACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACT 75859 | || || ||||| || | || || ||| |||||| | || ||||| | | Sbjct 175926 GAGATGAATTTGATGCATTATATCAGAAA-TATGAACAAGAAGGTAGGTTTGTTAAAAAA 175868 Query 75860 GTACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACC 75918 || | || | || | |||||||||||| | | |||| ||||||||||| || Sbjct 175867 GTCCGCGCT-CAAATCCTATGGAAGGCTATTATTGAGGCACAAGTAGAGACTGGAACTCC 175809 Query 75919 ATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAAT 75978 ||| ||||||||||| ||||| || |||| ||||| || ||||||||||||||||| || Sbjct 175808 ATACATGCTTTACAAAGATGCATGCAACAGAAAGAGCAATCAAAAGAATTTGGGAACCAT 175749 Query 75979 CAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGT 76038 ||| || ||||| |||||||| ||| | ||||||||| | ||||| ||||| Sbjct 175748 CAAATGCAGCAATCTATGCACGGAGATTGTTGAGTACACATCTGCTGATGAAGTAGCTGT 175689 Query 76039 TTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGA 76098 |||||| ||||| ||||| || | | || ||| | ||| | | || | ||| Sbjct 175688 TTGCAACTTGGCGTCAATTGCTGTCAACATGTTTGTAACCGAA---AATAAAACATATGA 175632 Query 76099 TTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGA 76158 || ||| ||||| | || | || || || | || | || || ||| | || || Sbjct 175631 TTTTGAGAAACTAAAACAAGTGACCAAAATCATAACTGAGAACCTGAACAAGATTATCGA 175572 Query 76159 CAGAAATTTTTATCCCGT-TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTG 76217 |||| |||||||| ||| ||| ||||||||| ||| | ||| ||||||| | Sbjct 175571 TGTTAATTACTATCCCGTCCCAGA-AGCGAAAAAGTCTAACATGAGGCACCGACCTATCG 175513 Query 76218 GTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTG-TGCCGCTACGCATTTGATTCA 76276 | | || || |||||||| || |||| ||| | ||| ||| || | | | || Sbjct 175512 GCATTGGCGTCCAAGGTCTGGCCGATGCTTTTGTATTGATGCGCCTTC-CTTACGAGAGT 175454 Query 76277 GATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAG 76336 || | |||| || || | ||| | || ||||||||||| ||| | | | | || Sbjct 175453 GAAGGAGCCCAGAAGCTCAATCAACAAATATTTGAAACCATCTATTATGGGGCTTTAGAA 175394 Query 76337 GCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCG 76396 || || |||||| |||| ||| | || ||||| || | || |||| ||| || Sbjct 175393 GCTAGCTGTGAACTGGCCGAAAAACTCGGCGTTTATGAAACGTATGCTGGTTGTCCGGCC 175334 Query 76397 TCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAAC--TACGACT 76454 |||| | | || | ||| ||||||| | || ||| | | | | | |||| Sbjct 175333 AGTGAAGGAATATTGCAATATGAAATGTGGGGA-AAGACACCCA-CAGACCTGTGGGACT 175276 Query 76455 GGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCAC 76514 || || ||| ||| | ||| | | | || || || ||| ||| ||| |||| | Sbjct 175275 GGAGTGCTCTGAAGCAGAAGATCGCGAAACATGGCCTGCGGAACTCTCTGTTGCTGGCCC 175216 Query 76515 CAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACA 76574 | ||||| || |||||||| ||||| || | || || ||||||| ||||| |||| || Sbjct 175215 CCATGCCCACCGCCTCCACTGCACAGATTCTTGGCAACAATGAATCATTTGAGCCATTCA 175156 Query 76575 CAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACC 76634 | ||||||| |||| |||||| || | || || || | |||||| | |||| Sbjct 175155 CTTCAAACATTTACCAAAGAAGAGTTCTTTCTGGAGAATTCCAGGTGGTCAACCATCACC 175096 Query 76635 TCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGA 76694 | | || |||| || || | | ||| | |||||||| ||||||| | Sbjct 175095 TGCTTCGCGATCTCACCGAGGCTGATTTATGGGATGATGATATGAAAAATCTCATTATAC 175036 Query 76695 AAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGA-ATCTCTAC 76753 | ||| |||||||| ||| | ||| || | || || |||| |||| ||| Sbjct 175035 ACAACAATGGATCCATTCAGTCTATTGAAAGTATTCCCAAAGAAAT-AAGAGATCTTTAC 174977 Query 76754 CGCACAGTGTGGGAAATCAAGATGAAAGATGTC-ATTGACATGGCCGCAGATCGTGGTCG 76812 || |||||||| || || |||| | || | |||||||| ||||||||| Sbjct 174976 AAGACTGTGTGGGAGATATCTGTG-AAGACCACAATCCAAATGGCCGCGGATCGTGGTGC 174918 Query 76813 CTTCATTGATCAAAGTCAA 76831 |||||||| || |||||| Sbjct 174917 TTTCATTGACCAGAGTCAA 174899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596556221926720