Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_021073.1 Length=107218 Score E Sequences producing significant alignments: (Bits) Value seq974 230 2e-55 seq962 105 5e-18 >seq974 Length=31311 Score = 230 bits (254), Expect = 2e-55 Identities = 269/361 (75%), Gaps = 2/361 (1%) Strand=Plus/Minus Query 9245 ATCTCCCTCCCGACACCAATCATGTCTGGTGTTCGTACACCGACCCGCCAATTCAGCTCA 9304 || || || || || |||||||||||||| || || || || ||||| || |||||||| Sbjct 365 ATTTCTCTGCCTACGCCAATCATGTCTGGCGTGCGCACCCCAACCCGTCAGTTCAGCTCC 306 Query 9305 TGCGTAAAAATCGAAAGCGGTGATAGCCTAAAATCAATCAATGCAACATCAGGCGCAATC 9364 |||||| ||||| | ||||| ||||| | || ||||| || || || |||| ||| Sbjct 305 TGCGTACTGATCGAGTGTGGTGACAGCCTGGATTCCATCAACGCCACGTCCAGCGCCATC 246 Query 9365 GTGAGTTACGTTTCACAGCGTGCAGGTATTGGCATTAACGCGGGTCGTATCCGAGCATTA 9424 |||| |||||||| |||||||| ||||| ||||| ||||| ||||| ||||| || | Sbjct 245 GTGAAATACGTTTCCCAGCGTGCCGGTATCGGCATCAACGCCGGTCGCATCCGTGCGCTG 186 Query 9425 GGTTCTGAGATTCGTGGTGGTGAAGCGGTACATACTGGTTGTATCCCATTCTACAAACAC 9484 || |||||| || |||||||| | || || || |||||||| ||||| || ||| Sbjct 185 GGCAGCCCGATTCGCGGCGGTGAAGCATTCCACACCGGCTGTATCCCGTTCTATAAGCAC 126 Query 9485 TTCCAAACAGCAGTGAAATGTTGTAGCCAAGGCGGTGTTCGTGGCGGCGCGGCAACGGTA 9544 ||||| || || || |||| || || ||||| || || ||||| || || || | Sbjct 125 TTCCAGACGGCGGTAAAATCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCTGCGACCCTG 66 Query 9545 TTCTACCCAATGTGGCACCTAG-AGTACAAATCACTAATCGTACTCAAGAACAACCGTGG 9603 |||||||| ||||||||||| | ||| ||| | || | || || || ||||||||||| Sbjct 65 TTCTACCCTATGTGGCACCTGGAAGTGGAAAGC-CTGCTGGTCCTGAAAAACAACCGTGG 7 Query 9604 T 9604 | Sbjct 6 T 6 >seq962 Length=32987 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 6202 TCGCCGTTCTACCCGATGTTCAACTGCTGTTTGGTCGATCTTAAAGGTATGTTGGCGAAT 6261 || ||||||| ||||||||||||||| || | || || ||||| ||| || | | Sbjct 25584 TCACCGTTCTTCCCGATGTTCAACTGTATGCTGATTGACCTGAAAGGCATGCTGACCCAC 25525 Query 6262 GGGTTTATGATGGGTAACGCAGACATCGAAACCCCTAAGTCAATCTCAACTGCGTGTGCT 6321 ||||||| ||||||||||| || || ||| | || || || ||||| || || ||| Sbjct 25524 GGGTTTAAAATGGGTAACGCCGAGATTGAACCGCCAAAATCCATCTCCACCGCCACTGCG 25465 Query 6322 ATCACTGCACAAATTATCGCTCAGGTTGCGTGCCACCAATACGGTGGGGTTAGCCTCAAT 6381 |||| ||||| |||||||| ||||| || ||||| ||||| || | | | || Sbjct 25464 GTCACGGCACAGATTATCGCCCAGGTCGCCAGCCACATTTACGGCGGCACCACCATTAAC 25405 Query 6382 CGTCTTGATGAGGTGTTGGCACC 6404 || |||| || ||| |||| || Sbjct 25404 CGCATTGACGAAGTGCTGGCCCC 25382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 342965301114086