Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_021190.1 Length=46150 Score E Sequences producing significant alignments: (Bits) Value seq997 518 1e-142 seq983 242 1e-59 seq1547 205 3e-48 seq1127 100 8e-17 >seq997 Length=29618 Score = 518 bits (574), Expect = 1e-142 Identities = 454/562 (81%), Gaps = 5/562 (1%) Strand=Plus/Minus Query 43026 CTGCAGCGCTGGACTTATGCTGGCGGCAAGCAGTGGAAGGGGCTGA-TCACCCGGCGCGA 43084 |||| |||||||||| ||||||| ||||| |||||||| ||| ||| | || || || || Sbjct 18346 CTGCGGCGCTGGACTCATGCTGGAGGCAAACAGTGGAAAGGG-TGAGTAACGCGCCGGGA 18288 Query 43085 GATTGAGCGTGAAGTCTGCGAGTGGGGCCAGAAATGAGCCGATTAACCGCAATCATCTGC 43144 || |||||| ||| ||||| ||||| ||| |||||||| |||||||||| ||||||||| Sbjct 18287 GAATGAGCGCGAATTCTGCATGTGGGACCATAAATGAGCTGATTAACCGCGATCATCTGC 18228 Query 43145 GCTGTCGTTATCTGCCTGCTGGTTTCCATGGCCTGGGCCATTAACCACTACCGCGACAAC 43204 ||||||||||||||||||||||| | ||||| ||||| ||||||||||| ||||||||| Sbjct 18227 GCTGTCGTTATCTGCCTGCTGGTCTTTATGGCTTGGGCGATTAACCACTATCGCGACAAC 18168 Query 43205 GCCATCACCTACAAAGACCAGCGCGACAAAGCCACCAAAAGTCTCCGCCTGGCTAACGAC 43264 ||||||||||||||||| |||||||| |||||||| | | ||| ||| ||| |||| | Sbjct 18167 GCCATCACCTACAAAGAGCAGCGCGATAAAGCCACTGAGAAACTCAGCCAGGCCAACGCC 18108 Query 43265 ACCATCAAAGACATGCAGACCCGTCAGCGTGATGTCGCTGCACTGGATGCCAAATACACC 43324 ||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||| Sbjct 18107 ACCATCAAAGACATGCAGACCCGCCAGCGTGATGCCGCTGCGCTGGATGCCAAATACACT 18048 Query 43325 GGAGAACTGGCTGATGCGAAAGAAACCATTGAGCGTCTGCATAGCGATGTCATTGCTGGC 43384 ||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 18047 GGAGAACCGGCTGATGCGAAAGATATCATTGAGCGTCTGCATAGCGATGTCATTGCTGGC 17988 Query 43385 CGTAAGCGGCTGCAAGTCGCCGCCACCTGT---GCAAAGTCAACGACCGGAGCCAGCAGC 43441 |||||||||||||| || ||| | |||| || || | ||||||| || || || Sbjct 17987 CGTAAGCGGCTGCAGCTCAACGCAAACTGTCCCGCGAACGGAGCGACCGGCACCGGCGGC 17928 Query 43442 ATGGGCGATGGAGAAAGCCCAAGACTTACAGCAGATGCTGAACTCAATTATTACCGTCTC 43501 |||||||||| |||| |||||||| | ||||||| |||||| | ||| Sbjct 17927 ATGGGCGATGCTTCCGGCCCCAGACTTACTGACTCCGCTGAACGGGATTATTTCATCCTC 17868 Query 43502 CGAAGTGGAATCGACAGGATAACCGCGCAGGTTAACTACCTGCAGGAATACATCAGGACG 43561 ||| |||||| || | || |||||| ||| |||||| | ||||| || || Sbjct 17867 AGAAAGCGAATCGTCACAGTGACGAAGCAGGTCGGCTATCTGCAGAACTACATAAGCACT 17808 Query 43562 CAATGCCTGAAATAAttttttt 43583 || ||| | |||||| ||||| Sbjct 17807 CAGTGCTTAAAATAAAGTTTTT 17786 Score = 214 bits (236), Expect = 5e-51 Identities = 228/296 (77%), Gaps = 4/296 (1%) Strand=Plus/Minus Query 42130 AAAAAACGCGGAGAACGACATCACCCCTCTCCGCAATAACGACTCAATCTCATACCCGCT 42189 ||||| |||||||||||||||| | |||||||| ||| | | | | |||||||| Sbjct 21524 AAAAAGTGCGGAGAACGACATCAATCTTCTCCGCATTAATAATGCCAGTGC-TACCCGCT 21466 Query 42190 TGTCTTTCTTTTATCCACAAAGAGGTAAAGCCAT-AACTTAGTGGAAATGGTAACAGCTA 42248 ||| | |||| ||||| | | |||| ||| | |||||| | ||||| ||||| || Sbjct 21465 TGTATCTCTTATATCC-CTATGAGGATAAGTTTTTAACTTAACGCAAATGATAACATTTA 21407 Query 42249 AAAACTATTTGAAAAGCTAATTATTTTTT-GCATCAACTGGCTATTCTTAAGGATTGTTT 42307 |||||||| |||| || ||||| |||| || | || | | | |||||||||||| ||| Sbjct 21406 AAAACTATGTGAATAGTTAATTGTTTTAAAGCTTTAAATAGTTCTTCTTAAGGATTATTT 21347 Query 42308 AATTTTTTGCTTTCCTAGCGAGAAAGAAGCTCCGGAAACTATCAATCAATACAAGGCTGC 42367 |||||||||| ||||| |||| |||||||| | | | | || | |||||||||| Sbjct 21346 AATTTTTTGCATTCCTCAGAAGAAGGAAGCTCCAGCAGGTTTTAACCCTCACAAGGCTGC 21287 Query 42368 CGTTCGGCGGCCTTTTTTATTCCTAGCAACAGCACTCGCACAAAGCGAGGTGAGAG 42423 |||| |||||||||||||||| || |||| ||||| |||||||||||||||||||| Sbjct 21286 CGTTTGGCGGCCTTTTTTATTTCTTGCAATAGCACCCGCACAAAGCGAGGTGAGAG 21231 >seq983 Length=30748 Score = 242 bits (268), Expect = 1e-59 Identities = 247/322 (77%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 23432 ACGCAGTTAAAGTGGCGGGCATACTCTTCAAGGCTGGTGATACCCAACCGCACCCATTTA 23491 |||||||| ||||| |||||||||||||||||||||||||| || | ||||||||||| Sbjct 9108 ACGCAGTTGAAGTGTCGGGCATACTCTTCAAGGCTGGTGATGCCAAGGCGCACCCATTTT 9167 Query 23492 GGATGCGACCATTGCGGCAGACCGATGTAAATCATAACGCGTGAAGGATCTCTTCCACGC 23551 || |||||||| || || | ||||| || |||||| |||| | ||||| ||| || Sbjct 9168 GGGTGCGACCACTGGGGTAAACCGACATACATCATAGCGCGCTGACAATCTCATCCGTGC 9227 Query 23552 TACGCACACGGGCGATGCGCGGGTAGATATGATTAATGCTGTTATTGTGTTGCTCGGCGC 23611 | ||||| ||| ||||||||||| |||| || | |||||| | ||| || || ||| Sbjct 9228 TGCGCACGCGGCCGATGCGCGGGAAGATGTGGGTCATGCTGCCCTGGTGCTGTTCCGCGG 9287 Query 23612 TGGCGGCACTACAGGCGTCTTCGGCAATCACCAGATTAAAGCCAAGTTCCCAGGCATTGC 23671 ||| || || ||||| |||||||| |||||||||||||| || || ||||| || |||| Sbjct 9288 AGGCCGCGCTGCAGGCATCTTCGGCGATCACCAGATTAAAACCGAGCTCCCACGCGTTGC 9347 Query 23672 GGGCGGTGGATTCAACACCGATATTGGTCGAGATCCCACATAACACAATTGTATCGATAC 23731 |||| || || || || ||||| ||||| || || || || | | ||| || || || | Sbjct 9348 GGGCAGTCGACTCCACGCCGATGTTGGTGGAAATACCGCACAGGATAATGGTGTCAATGC 9407 Query 23732 CTCGGCGGCGTAACCGCACCTC 23753 | || ||||| | | ||| ||| Sbjct 9408 CGCGACGGCGGAGCTGCAGCTC 9429 >seq1547 Length=4346 Score = 205 bits (226), Expect = 3e-48 Identities = 289/400 (72%), Gaps = 7/400 (2%) Strand=Plus/Minus Query 21185 GATTGATCGTTTTGGGCGATCAATAACTGAT--AATTGATCTATCAAACCAATTATACCC 21242 ||||||||||||| ||||||||| || || |||||||||| || |||||||| || Sbjct 596 GATTGATCGTTTTCAGCGATCAAT--CTTATGAAATTGATCTACAGAATCAATTATATCC 539 Query 21243 ACCTCTTTCATGTTGGTATTGTCTAAGTTCATGAATACCTCTGG-ATACTATCAAAATGA 21301 | ||||| ||| |||||| ||| || ||||| | ||||| ||| | || |||| Sbjct 538 CTTTGATTCATCTTGTTATTGTTTAACCTCTTGAAT-CTTCTGGGATATAACCACTATGA 480 Query 21302 GAAAACTGATTATCTGCATGGCAGGCGCTGTCATGCTTACAGGATGCGCTGGCGTAATTG 21361 | | ||||| | ||| |||| | |||| |||| | || ||||||||||| || Sbjct 479 AATACATGATTCTTTGCCTGGCGGTGGCTGCATTGCTCTCTGGTTGCGCTGGCGTTCTTC 420 Query 21362 AGAAACAGGAACCAGTTTGCAGCGGCACTGCAATCGTTGGCGGTCAGGAAACTACGGTTC 21421 |||| ||| | || | || | ||| || || | | ||||| ||||| | | || | Sbjct 419 AGAAGCAGCATCCCATATGTACCGGAACGGCCCTGATCGGCGGACAGGAGAACATCGTCC 360 Query 21422 AGATTTACGGTGTGCGTAAACAAAACAACCAGACGCAGTACCGGGCTGGATATCCTTTCA 21481 |||||||||| ||||| || |||| || ||||| |||||||| || || || || || | Sbjct 359 AGATTTACGGAGTGCGGAAGCAAAGTAATCAGACCCAGTACCGCGCCGGTTACCCATTTA 300 Query 21482 GCTGGCGCTGGGTAAGTGCGAATACATTTACCGAAACAACCTGCAAATAACCCACTACGC 21541 |||| ||||| ||||| || || || | | || |||||| |||| | || | | Sbjct 299 ACTGGAATTGGGTTAGTGCCAACACGTTCATCAGCACCACCTGCCAATAGCTCATTCTGT 240 Query 21542 TTAAACATAAACCTCGCTCCGGCGGGGtttttttATTGCC 21581 || || | ||||||||||||||||||| |||||||||||| Sbjct 239 TTCAAAACAAACCTCGCTCCGGCGGGG-TTTTTTATTGCC 201 Score = 156 bits (172), Expect = 1e-33 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 19981 TTCATCCAGGACGGCACTATCAGCAACGCAAAGATTGGTAATTTTATCCAGTCGAACAAT 20040 || || ||||| ||||| |||| ||| || || || || | || |||||||| || || Sbjct 1846 TTTATTCAGGATGGCACGATCACCAATGCCAAAATCGGCGACTTCATCCAGTCCAATAAC 1787 Query 20041 TATGTTGCTGGTTCTGCTGGCTGGAAGCTTGATAAAGGGGGGACGTTTGAGAACTACGGT 20100 || |||||||| |||| || |||| ||| |||||| || || || |||||||||||| Sbjct 1786 TACGTTGCTGGGTCTGTCGGATGGAGGCTGGATAAATCAGGAACATTCGAGAACTACGGT 1727 Query 20101 TCGACTGCTGGTGAGGGAGCCATGAAACTGACAAATCAGACGATCAGCGTCAAAGATGGC 20160 ||||| | ||| |||||||||||||||| |||||| ||||| ||||| || || | | Sbjct 1726 TCGACAGTTGGAGAGGGAGCCATGAAACAGACAAACCAGACAATCAGTGTGCGTGACGCC 1667 Query 20161 AGTAATGTTCTTAGGGTGCAGGTTGGCCGATTAACGGGA 20199 | ||||| | ||||||||| | || || | |||||| Sbjct 1666 AACAATGTGTTGAGGGTGCAGATCGGGAGAATCACGGGA 1628 >seq1127 Length=20158 Score = 100 bits (110), Expect = 8e-17 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 23066 GGAAAGATCCGGTGCACTCGCTTTGTTAACTCATTCAGAATTATTTCTCTGGCACCTGTT 23125 ||||| ||| |||||||||||||||||| |||| ||| || || |||||||| ||| Sbjct 7808 GGAAAAATCTGGTGCACTCGCTTTGTTAGCTCAGCCAGGATGATCTCTCTGGCCCCTTGG 7867 Query 23126 AATCCTTCAACATTCCGTTTGTCGTACACCAACTCAACGAACATACCG 23173 | ||||||||||| || ||||| || |||| ||||| ||||||||| Sbjct 7868 AGCCCTTCAACATTTCGCTTGTCATAAACCAGTTCAACAAACATACCG 7915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147555256452736