Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq197 113 8e-20 seq266 107 3e-18 seq47 107 3e-18 >seq197 Length=620651 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | || || | ||||| || | || | |||||| ||||||||||| Sbjct 446703 ATACCACCACGCAGACGCAATACCAAGTGAAGAGTCGACTCTTTCTGGATATTATAGTCT 446762 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || || | || |||| |||||| ||||| || || | || ||| || || ||| Sbjct 446763 GACAATGTACGGCCGTCTTCTAGTTGTTTACCGGCGAAGATAAGTCGCTGCTGGTCGGGA 446822 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || |||| || | ||| || || || |||| ||| Sbjct 446823 GGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGCTTCA 446882 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || || || || ||||| ||||| || || || ||||| Sbjct 446883 ACTTCCAGAGTGATTGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCAT 446932 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | || || | ||||| || | || | |||||| ||||||||||| Sbjct 448860 ATACCACCACGCAGACGCAATACCAAGTGAAGGGTTGACTCTTTCTGGATATTATAGTCA 448919 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || || | || |||| |||||| ||||| || || | || ||| || || ||| Sbjct 448920 GACAATGTACGGCCGTCTTCTAGTTGTTTACCGGCGAAGATAAGTCGCTGCTGGTCGGGA 448979 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || |||| || | ||| || || || |||| || Sbjct 448980 GGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGCTTCC 449039 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || || || || ||||| ||||| || || || ||||| Sbjct 449040 ACTTCCAGAGTGATTGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCAT 449089 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||||| || |||||||||| || | || | |||||| ||| || ||||| Sbjct 446931 ATACCACCTCGCAGACGAAGTACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCA 446990 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || || || || || || || || | | ||| || || ||| Sbjct 446991 GACAGGGTGCGGCCATCTTCCAACTGCTTACCAGCGAAGATCAGACGCTGCTGGTCTGGA 447050 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || || || || || | ||| | ||| |||||||||| | ||| Sbjct 447051 GGGATGCCCTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATAGTATCGGCTGGCTCG 447110 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| ||||||||||| || || || || || || || ||||| Sbjct 447111 ACCTCAAGAGTGATAGTTTTACCAGTAAGAGTCTTGACGAAAATCTGCAT 447160 >seq266 Length=494307 Score = 107 bits (118), Expect = 3e-18 Identities = 89/107 (83%), Gaps = 4/107 (4%) Strand=Plus/Plus Query 263795 GGGAGGTCCGTAGCTACTATGTAAGCCGGTGCTGACGAGGAACCGGTCTAACTCCTTGTC 263854 ||||||||| | |||||| ||||||||||| || |||||| ||||||||| |||| | Sbjct 288000 GGGAGGTCCATTGCTACTCAGTAAGCCGGTGTTGGCGAGGAGCCGGTCTAATTCCTCACC 288059 Query 263855 ATCAGATATGTTGAAGCGTATAAGCAATCATATAATGGTAATATAAT 263901 |||||||||||||||||| || |||||||| ||||||| ||||| Sbjct 288060 ATCAGATATGTTGAAGCG---CAGTAATCATAT-ATGGTAAAATAAT 288102 >seq47 Length=1392491 Score = 107 bits (118), Expect = 3e-18 Identities = 89/107 (83%), Gaps = 4/107 (4%) Strand=Plus/Plus Query 263795 GGGAGGTCCGTAGCTACTATGTAAGCCGGTGCTGACGAGGAACCGGTCTAACTCCTTGTC 263854 ||||||||| | |||||| ||||||||||| || |||||| ||||||||| |||| | Sbjct 405127 GGGAGGTCCATTGCTACTCAGTAAGCCGGTGTTGGCGAGGAGCCGGTCTAATTCCTCACC 405186 Query 263855 ATCAGATATGTTGAAGCGTATAAGCAATCATATAATGGTAATATAAT 263901 |||||||||||||||||| || |||||||| ||||||| ||||| Sbjct 405187 ATCAGATATGTTGAAGCG---CAGTAATCATAT-ATGGTAAAATAAT 405229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899634225250080