Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq197 113 8e-20
seq266 107 3e-18
seq47 107 3e-18
>seq197
Length=620651
Score = 113 bits (124), Expect = 8e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|||||||| | || || | ||||| || | || | |||||| |||||||||||
Sbjct 446703 ATACCACCACGCAGACGCAATACCAAGTGAAGAGTCGACTCTTTCTGGATATTATAGTCT 446762
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
|| || || | || |||| |||||| ||||| || || | || ||| || || |||
Sbjct 446763 GACAATGTACGGCCGTCTTCTAGTTGTTTACCGGCGAAGATAAGTCGCTGCTGGTCGGGA 446822
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || ||||| || ||||| || |||| || | ||| || || || |||| |||
Sbjct 446823 GGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGCTTCA 446882
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||| ||||| || || || || ||||| ||||| || || || |||||
Sbjct 446883 ACTTCCAGAGTGATTGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCAT 446932
Score = 109 bits (120), Expect = 1e-18
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|||||||| | || || | ||||| || | || | |||||| |||||||||||
Sbjct 448860 ATACCACCACGCAGACGCAATACCAAGTGAAGGGTTGACTCTTTCTGGATATTATAGTCA 448919
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
|| || || | || |||| |||||| ||||| || || | || ||| || || |||
Sbjct 448920 GACAATGTACGGCCGTCTTCTAGTTGTTTACCGGCGAAGATAAGTCGCTGCTGGTCGGGA 448979
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || ||||| || ||||| || |||| || | ||| || || || |||| ||
Sbjct 448980 GGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGCTTCC 449039
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||| ||||| || || || || ||||| ||||| || || || |||||
Sbjct 449040 ACTTCCAGAGTGATTGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCAT 449089
Score = 100 bits (110), Expect = 5e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|||||||||| || |||||||||| || | || | |||||| ||| || |||||
Sbjct 446931 ATACCACCTCGCAGACGAAGTACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCA 446990
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
|| | || | ||| || || || || || || || || | | ||| || || |||
Sbjct 446991 GACAGGGTGCGGCCATCTTCCAACTGCTTACCAGCGAAGATCAGACGCTGCTGGTCTGGA 447050
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || || || || || || || || | ||| | ||| |||||||||| | |||
Sbjct 447051 GGGATGCCCTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATAGTATCGGCTGGCTCG 447110
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || ||||| ||||||||||| || || || || || || || |||||
Sbjct 447111 ACCTCAAGAGTGATAGTTTTACCAGTAAGAGTCTTGACGAAAATCTGCAT 447160
>seq266
Length=494307
Score = 107 bits (118), Expect = 3e-18
Identities = 89/107 (83%), Gaps = 4/107 (4%)
Strand=Plus/Plus
Query 263795 GGGAGGTCCGTAGCTACTATGTAAGCCGGTGCTGACGAGGAACCGGTCTAACTCCTTGTC 263854
||||||||| | |||||| ||||||||||| || |||||| ||||||||| |||| |
Sbjct 288000 GGGAGGTCCATTGCTACTCAGTAAGCCGGTGTTGGCGAGGAGCCGGTCTAATTCCTCACC 288059
Query 263855 ATCAGATATGTTGAAGCGTATAAGCAATCATATAATGGTAATATAAT 263901
|||||||||||||||||| || |||||||| ||||||| |||||
Sbjct 288060 ATCAGATATGTTGAAGCG---CAGTAATCATAT-ATGGTAAAATAAT 288102
>seq47
Length=1392491
Score = 107 bits (118), Expect = 3e-18
Identities = 89/107 (83%), Gaps = 4/107 (4%)
Strand=Plus/Plus
Query 263795 GGGAGGTCCGTAGCTACTATGTAAGCCGGTGCTGACGAGGAACCGGTCTAACTCCTTGTC 263854
||||||||| | |||||| ||||||||||| || |||||| ||||||||| |||| |
Sbjct 405127 GGGAGGTCCATTGCTACTCAGTAAGCCGGTGTTGGCGAGGAGCCGGTCTAATTCCTCACC 405186
Query 263855 ATCAGATATGTTGAAGCGTATAAGCAATCATATAATGGTAATATAAT 263901
|||||||||||||||||| || |||||||| ||||||| |||||
Sbjct 405187 ATCAGATATGTTGAAGCG---CAGTAATCATAT-ATGGTAAAATAAT 405229
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899634225250080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |