Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq65 113 7e-20
seq197 95.1 2e-14
>seq65
Length=1244346
Score = 113 bits (124), Expect = 7e-20
Identities = 108/137 (79%), Gaps = 1/137 (1%)
Strand=Plus/Minus
Query 18177 AACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCttt 18236
||||| |||||||||| || ||||| || || || || | |||||||| | ||||| |
Sbjct 631697 AACCT-CATCTCTGGAGATCAATTCATTGCTGAAGGTCAGTCCGGGCATGAGCCCTCTCT 631639
Query 18237 tttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGCGA 18296
|||| ||||| || || ||||||||||| | ||| ||||| || |||||||| |||||
Sbjct 631638 TTTTAAGCCAGAAGATGGATGCGAAACTGCCAGAGAAGAAGATGCCCTCAACTGCCGCGA 631579
Query 18297 ACGCTATTAATCTTTCA 18313
| |||| || |||||||
Sbjct 631578 ATGCTACTATTCTTTCA 631562
Score = 96.9 bits (106), Expect = 5e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 18411 TTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGC 18470
|||| || | |||| | || |||||||| || | || || ||||||||||||||||
Sbjct 631005 TTTCCTTAGGATCTCTGATGTAAGTGTCAATAAGTAATGAGTACATTTCAGAATGTACAT 630946
Query 18471 TTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTAT 18530
| ||||| || || || || | || || ||||||| || | ||| | ||
Sbjct 630945 TCTCCATGGCGATTTGGAATCCGTAGAAGCATCTAGCTTCAGTCACTTGCACTTCCTGGG 630886
Query 18531 AAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAA 18590
| || ||||| || | ||||||||||| || || |||| || || || |||||||| |
Sbjct 630885 AGAACCTTTCCACAAGGTTCTCATTAACAATCCCATCAGAAGCAGCAAAGAATGCCAAGA 630826
Query 18591 CATATTTAATGAAATGTTTTTCA 18613
||| ||| || ||||| |||||
Sbjct 630825 CATGTTTGATAAAATGCCTTTCA 630803
>seq197
Length=620651
Score = 95.1 bits (104), Expect = 2e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || || | ||||| ||||||| || || || || |||||||||||| |||
Sbjct 446704 ATGCAGATTTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTAGAAGTCGAAGCTTCA 446645
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | || || || || ||| || ||||| || |||||||| ||||| || ||
Sbjct 446644 GACACCATCGAGAATGTAAAGGCTAAGATCCAAGACAAGGAAGGCATTCCTCCGGACCAG 446585
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| | |||| | || ||||||||||| ||||| | | || ||||| || || ||
Sbjct 446584 CAGCGTCTGATCTTCGCTGGTAAGCAGCTAGAAGACGGCCGCACCTTATCTGACTACAAC 446525
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049
|| || ||| | || |||||| | || ||| || | |||| ||
Sbjct 446524 ATCCAGAAGGAGTCTACCCTTCATCTTGTTTTACGACTCCGAGGAGG 446478
Score = 89.7 bits (98), Expect = 8e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || || | ||||| ||||||| || || || || | |||||||||| |||
Sbjct 448332 ATGCAGATTTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAAGCTTCA 448273
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | || || || || ||| || ||||| || |||||||| ||||| || ||
Sbjct 448272 GACACCATCGAGAATGTAAAGGCTAAGATCCAAGACAAGGAAGGCATTCCTCCGGACCAG 448213
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| | |||| | || ||||||||||| ||||| | | || ||||| || || ||
Sbjct 448212 CAGCGTCTGATCTTCGCTGGTAAGCAGCTAGAAGACGGCCGCACCTTATCTGACTACAAC 448153
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049
|| || ||| | || |||||| | || ||| || | |||| ||
Sbjct 448152 ATCCAGAAGGAGTCTACCCTTCATCTTGTTTTACGACTCCGAGGAGG 448106
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731855587770400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |