Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq65 113 7e-20 seq197 95.1 2e-14 >seq65 Length=1244346 Score = 113 bits (124), Expect = 7e-20 Identities = 108/137 (79%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 18177 AACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCttt 18236 ||||| |||||||||| || ||||| || || || || | |||||||| | ||||| | Sbjct 631697 AACCT-CATCTCTGGAGATCAATTCATTGCTGAAGGTCAGTCCGGGCATGAGCCCTCTCT 631639 Query 18237 tttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGCGA 18296 |||| ||||| || || ||||||||||| | ||| ||||| || |||||||| ||||| Sbjct 631638 TTTTAAGCCAGAAGATGGATGCGAAACTGCCAGAGAAGAAGATGCCCTCAACTGCCGCGA 631579 Query 18297 ACGCTATTAATCTTTCA 18313 | |||| || ||||||| Sbjct 631578 ATGCTACTATTCTTTCA 631562 Score = 96.9 bits (106), Expect = 5e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18411 TTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGC 18470 |||| || | |||| | || |||||||| || | || || |||||||||||||||| Sbjct 631005 TTTCCTTAGGATCTCTGATGTAAGTGTCAATAAGTAATGAGTACATTTCAGAATGTACAT 630946 Query 18471 TTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTAT 18530 | ||||| || || || || | || || ||||||| || | ||| | || Sbjct 630945 TCTCCATGGCGATTTGGAATCCGTAGAAGCATCTAGCTTCAGTCACTTGCACTTCCTGGG 630886 Query 18531 AAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAA 18590 | || ||||| || | ||||||||||| || || |||| || || || |||||||| | Sbjct 630885 AGAACCTTTCCACAAGGTTCTCATTAACAATCCCATCAGAAGCAGCAAAGAATGCCAAGA 630826 Query 18591 CATATTTAATGAAATGTTTTTCA 18613 ||| ||| || ||||| ||||| Sbjct 630825 CATGTTTGATAAAATGCCTTTCA 630803 >seq197 Length=620651 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| ||||||| || || || || |||||||||||| ||| Sbjct 446704 ATGCAGATTTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTAGAAGTCGAAGCTTCA 446645 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || || ||| || ||||| || |||||||| ||||| || || Sbjct 446644 GACACCATCGAGAATGTAAAGGCTAAGATCCAAGACAAGGAAGGCATTCCTCCGGACCAG 446585 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | |||| | || ||||||||||| ||||| | | || ||||| || || || Sbjct 446584 CAGCGTCTGATCTTCGCTGGTAAGCAGCTAGAAGACGGCCGCACCTTATCTGACTACAAC 446525 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || ||| | || |||||| | || ||| || | |||| || Sbjct 446524 ATCCAGAAGGAGTCTACCCTTCATCTTGTTTTACGACTCCGAGGAGG 446478 Score = 89.7 bits (98), Expect = 8e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| ||||||| || || || || | |||||||||| ||| Sbjct 448332 ATGCAGATTTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAAGCTTCA 448273 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || || ||| || ||||| || |||||||| ||||| || || Sbjct 448272 GACACCATCGAGAATGTAAAGGCTAAGATCCAAGACAAGGAAGGCATTCCTCCGGACCAG 448213 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | |||| | || ||||||||||| ||||| | | || ||||| || || || Sbjct 448212 CAGCGTCTGATCTTCGCTGGTAAGCAGCTAGAAGACGGCCGCACCTTATCTGACTACAAC 448153 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || ||| | || |||||| | || ||| || | |||| || Sbjct 448152 ATCCAGAAGGAGTCTACCCTTCATCTTGTTTTACGACTCCGAGGAGG 448106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731855587770400